Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Reverse (-)

10962619 .. 10964025

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g14960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAGGTGGGGCAAATGCAGAGACAGTGGGTTGACTACACAAAATCCCTGTTCCTGGAGGGCTTTCTGGATGGTCAGTTTTTGCAGCTCCAACAGCTGCAGGATGAGAGCAACCCAGATTTTGTTGTCGAAGTGGTGTCCCTTTTCTTTGAAGATTCCGAGAAGCTTCTCAATGATCTCACCAGAGCTCTAGAACAACCAACCGTAGACTTCAAAAGGGTTGATGCCCATGTTCACCAGTTCAAGGGTAGTAGCTCCAGTATTGGTGCGCAAAGAGTTAAAAATGCCTGCATTGCTTTCCGCAACTTCTGCGAGGAACAGAACACTGAAGGGTGTGTTAGATGTGTTCAACAAGTAAAGCATGAGTACTACCTCGTCAAGAGCAAGCTTGAAACTCTCTTCGCGATGGAGCAACAAATTATGGCAGCTGGCGGGTCGATTCCTATGTTGGAATTGAATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

155

Amino Acids

17.71

Weight (kDa)

4.84

Isoelectric Point (pI)

30.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	270
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	1 cut(s)	404
AciI	CCGC	2 cut(s)	301, 432
AcsI	RAATTY	1 cut(s)	457
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	2 cut(s)	55, 244
AgsI	TTSAA	6 cut(s)	152, 214, 244, 350, 392, 457
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	7 cut(s)	88, 97, 166, 188, 255, 388, 428
AluI	AGCT	7 cut(s)	88, 97, 166, 188, 255, 388, 428
Alw21I	GWGCWC	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	16
ApeKI	GCWGC	3 cut(s)	85, 97, 425
ApoI	RAATTY	1 cut(s)	457
AspLEI	GCGC	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	172, 227
BanII	GRGCYC	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	3 cut(s)	84, 97, 437
BccI	CCATC	2 cut(s)	65, 400
BciT130I	CCWGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	98
BisI	GCNGC	3 cut(s)	86, 98, 426
BlsI	GCNGC	3 cut(s)	87, 99, 427
BmcAI	AGTACT	1 cut(s)	368
Bme1390I	CCNGG	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	214
BpmI	CTGGAG	2 cut(s)	77, 241
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 244
Bse1I	ACTGG	2 cut(s)	238, 258
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	56
BseGI	GGATG	2 cut(s)	76, 109
BseLI	CCNNNNNNNGG	2 cut(s)	55, 244
BseMI	GCAATG	1 cut(s)	291
BseNI	ACTGG	2 cut(s)	238, 258
BseXI	GCAGC	3 cut(s)	84, 97, 437
Bsh1236I	CGCG	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	2 cut(s)	55, 244
BsmAI	GTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	175
Bsp68I	TCGCGA	1 cut(s)	404
BspACI	CCGC	2 cut(s)	301, 432
BspFNI	CGCG	1 cut(s)	404
BspMAI	CTGCAG	1 cut(s)	102
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	238, 258
BssMI	GATC	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	2 cut(s)	27, 205
Bst6I	CTCTTC	1 cut(s)	404
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstC8I	GCNNGC	3 cut(s)	289, 386, 430
BstF5I	GGATG	2 cut(s)	76, 109
BstFNI	CGCG	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 293, 309
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	98
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	3 cut(s)	84, 97, 437
BtgZI	GCGATG	1 cut(s)	419
BtsCI	GGATG	2 cut(s)	76, 109
BtsIMutI	CAGTG	2 cut(s)	32, 324
BtuMI	TCGCGA	1 cut(s)	404
Cac8I	GCNNGC	3 cut(s)	289, 386, 430
CfoI	GCGC	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	2 cut(s)	230, 362
CviJI	RGCY	8 cut(s)	63, 88, 97, 166, 188, 255, 388, 428
CviKI_1	RGCY	8 cut(s)	63, 88, 97, 166, 188, 255, 388, 428
CviQI	GTAC	1 cut(s)	367
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Ecl136II	GAGCTC	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	190
Eco53kI	GAGCTC	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	348
EcoICRI	GAGCTC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	190
FaeI	CATG	2 cut(s)	233, 365
FaiI	YATR	4 cut(s)	231, 363, 422, 446
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	2 cut(s)	229, 361
FauI	CCCGC	1 cut(s)	425
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	3 cut(s)	86, 98, 426
FokI	GGATG	2 cut(s)	83, 116
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	3 cut(s)	86, 98, 426
FspBI	CTAG	1 cut(s)	191
FspI	TGCGCA	1 cut(s)	270
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	3 cut(s)	86, 98, 426
GsuI	CTGGAG	2 cut(s)	77, 241
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	2 cut(s)	233, 365
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	2 cut(s)	164, 386
HinfI	GANTC	2 cut(s)	155, 439
HphI	GGTGA	2 cut(s)	172, 227
Hpy166II	GTNNAC	3 cut(s)	34, 208, 235
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	4 cut(s)	68, 191, 379, 403
Hpy8I	GTNNAC	3 cut(s)	34, 208, 235
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	2 cut(s)	27, 205
HpyCH4V	TGCA	4 cut(s)	19, 85, 100, 291
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 293, 309
Hsp92II	CATG	2 cut(s)	233, 365
HspAI	GCGC	1 cut(s)	269
Kzo9I	GATC	1 cut(s)	175
LmnI	GCTCC	3 cut(s)	93, 260, 409
Lsp1109I	GCAGC	3 cut(s)	84, 97, 437
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	191
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	2 cut(s)	164, 391
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	3 cut(s)	417, 452, 457
MmeI	TCCRAC	2 cut(s)	115, 429
MnlI	CCTC	3 cut(s)	52, 307, 383
MseI	TTAA	1 cut(s)	279
MspA1I	CMGCKG	2 cut(s)	97, 428
MspR9I	CCNGG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	3 cut(s)	94, 293, 309
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	2 cut(s)	233, 365
NruI	TCGCGA	1 cut(s)	404
NsbI	TGCGCA	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	155, 439
PfoI	TCCNGGA	1 cut(s)	54
PkrI	GCNGC	3 cut(s)	87, 99, 427
Psp124BI	GAGCTC	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PstI	CTGCAG	1 cut(s)	102
PvuII	CAGCTG	2 cut(s)	97, 428
RruI	TCGCGA	1 cut(s)	404
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
SacI	GAGCTC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	3 cut(s)	86, 98, 426
Sau3AI	GATC	1 cut(s)	175
ScaI	AGTACT	1 cut(s)	368
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	9 cut(s)	9, 90, 99, 168, 190, 257, 375, 390, 430
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	98
Sse9I	AATT	3 cut(s)	417, 452, 457
SsiI	CCGC	2 cut(s)	301, 432
SspMI	CTAG	1 cut(s)	191
SstI	GAGCTC	1 cut(s)	190
StyD4I	CCNGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	27, 205
TaqI	TCGA	2 cut(s)	129, 437
TasI	AATT	3 cut(s)	417, 452, 457
TatI	WGTACW	1 cut(s)	366
TfiI	GAWTC	2 cut(s)	155, 439
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	2 cut(s)	32, 331
TseI	GCWGC	3 cut(s)	85, 97, 425
TspRI	CASTG	2 cut(s)	32, 331
XapI	RAATTY	1 cut(s)	457
XbaI	TCTAGA	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	1 cut(s)	191
ZrmI	AGTACT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.