Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Reverse (-)

2749661 .. 2751264

Gene Structure 1604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g04970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCTGTCTCTAATTTGCAGAAGCAATATATTGATTACAAAGCCTCACTCTTTCACGAGGGGGTCCTTGACGAACAATTTGAACAGCTTCAGCAGCTCCAAGATGAGAGCAACCCACAATTTGTGGTTGAAGTGGTGTCTATCTTCTTCAAGGATTCTGAGAGAATTCTAAATGACCTGACCAAGACTCTAACTCAGCAGGATGTTGACTTCAAAAAGGTGGGTGCCAATGTTCACCAGTTGAAGGGTAGCAGCTCCAGCATTGGTGCTCAGAGGGTTCAGAGAGTCTGCATTGCATTCCGTAACTTCGGTGAGGAGCACAACATTGAAGGGTGCCTAAAAACTCTTCAGCTAGTGAAGCATGAATGTGCCATTGTGCAAAATAAACTCGAATCTCTTTTCAAGCTGGAGCAACAGATTATGGCTGCTGGCAGTAGTGTACCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

150

Amino Acids

16.91

Weight (kDa)

5.8

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	44 - 127	8.4e-14	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	224, 333
AcsI	RAATTY	1 cut(s)	165
AcuI	CTGAAG	2 cut(s)	74, 332
AfaI	GTAC	1 cut(s)	441
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	7 cut(s)	83, 131, 151, 214, 244, 329, 403
AluBI	AGCT	5 cut(s)	88, 97, 255, 352, 406
AluI	AGCT	5 cut(s)	88, 97, 255, 352, 406
Alw21I	GWGCWC	2 cut(s)	271, 321
Alw26I	GTCTC	1 cut(s)	13
ApeKI	GCWGC	3 cut(s)	94, 252, 425
ApoI	RAATTY	1 cut(s)	165
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
Asp700I	GAANNNNTTC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	2 cut(s)	227, 323
AvaII	GGWCC	1 cut(s)	64
BanI	GGYRCC	2 cut(s)	224, 333
BauI	CACGAG	1 cut(s)	56
Bbv12I	GWGCWC	2 cut(s)	271, 321
BbvI	GCAGC	3 cut(s)	106, 264, 412
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	353
BisI	GCNGC	3 cut(s)	95, 253, 426
BlsI	GCNGC	3 cut(s)	96, 254, 427
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	3 cut(s)	65, 226, 335
BpmI	CTGGAG	2 cut(s)	241, 428
BsaJI	CCNNGG	1 cut(s)	443
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	443
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	3 cut(s)	150, 209, 284
BseNI	ACTGG	1 cut(s)	238
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	3 cut(s)	106, 264, 412
BshNI	GGYRCC	2 cut(s)	224, 333
BsiHKAI	GWGCWC	2 cut(s)	271, 321
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	296
Bsp1286I	GDGCHC	2 cut(s)	271, 321
BspCNI	CTCAG	3 cut(s)	151, 208, 283
BspLI	GGNNCC	3 cut(s)	65, 226, 335
BspT107I	GGYRCC	2 cut(s)	224, 333
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	443
BssSI	CACGAG	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	443
Bst2BI	CACGAG	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	3 cut(s)	159, 195, 270
BstF5I	GGATG	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 258, 358
BstV1I	GCAGC	3 cut(s)	106, 264, 412
BtsCI	GGATG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	440
CviAII	CATG	1 cut(s)	362
CviJI	RGCY	8 cut(s)	5, 44, 88, 97, 255, 352, 406, 425
CviKI_1	RGCY	8 cut(s)	5, 44, 88, 97, 255, 352, 406, 425
CviQI	GTAC	1 cut(s)	440
DdeI	CTNAG	3 cut(s)	159, 195, 270
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	64
Eco57I	CTGAAG	2 cut(s)	74, 332
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	443
ErhI	CCWWGG	1 cut(s)	443
FaeI	CATG	1 cut(s)	365
FaiI	YATR	3 cut(s)	30, 363, 422
FatI	CATG	1 cut(s)	361
Fnu4HI	GCNGC	3 cut(s)	95, 253, 426
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	3 cut(s)	95, 253, 426
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	3 cut(s)	95, 253, 426
GsuI	CTGGAG	2 cut(s)	241, 428
Hin1II	CATG	1 cut(s)	365
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	4 cut(s)	155, 187, 285, 392
HphI	GGTGA	2 cut(s)	227, 323
Hpy166II	GTNNAC	3 cut(s)	208, 235, 440
Hpy188I	TCNGA	3 cut(s)	160, 273, 282
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	3 cut(s)	208, 235, 440
HpyAV	CCTTC	2 cut(s)	238, 323
HpyCH4V	TGCA	4 cut(s)	19, 291, 296, 379
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 258, 358
HpyF3I	CTNAG	3 cut(s)	159, 195, 270
Hsp92II	CATG	1 cut(s)	365
LmnI	GCTCC	4 cut(s)	102, 260, 316, 409
LpnPI	CCDG	6 cut(s)	185, 191, 251, 271, 392, 414
Lsp1109I	GCAGC	3 cut(s)	106, 264, 412
MaeI	CTAG	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	302
MboII	GAAGA	3 cut(s)	136, 139, 338
MhlI	GDGCHC	2 cut(s)	271, 321
MluCI	AATT	4 cut(s)	13, 77, 119, 165
MlyI	GAGTC	2 cut(s)	181, 294
MnlI	CCTC	4 cut(s)	52, 55, 267, 307
MroXI	GAANNNNTTC	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	296
MwoI	GCNNNNNNNGC	3 cut(s)	94, 258, 358
NlaIII	CATG	1 cut(s)	365
NlaIV	GGNNCC	3 cut(s)	65, 226, 335
PctI	GAATGC	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	155, 392
PkrI	GCNGC	3 cut(s)	96, 254, 427
PleI	GAGTC	2 cut(s)	181, 293
PpsI	GAGTC	2 cut(s)	181, 293
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
PspN4I	GGNNCC	3 cut(s)	65, 226, 335
PspPI	GGNCC	1 cut(s)	64
PspPPI	RGGWCCY	1 cut(s)	64
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
RseI	CAYNNNNRTG	1 cut(s)	366
SatI	GCNGC	3 cut(s)	95, 253, 426
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	2 cut(s)	181, 294
SduI	GDGCHC	2 cut(s)	271, 321
SetI	ASST	8 cut(s)	90, 99, 180, 222, 257, 354, 408, 449
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	366
Sse9I	AATT	4 cut(s)	13, 77, 119, 165
SspMI	CTAG	1 cut(s)	353
StyI	CCWWGG	1 cut(s)	443
TaqI	TCGA	1 cut(s)	390
TasI	AATT	4 cut(s)	13, 77, 119, 165
TfiI	GAWTC	2 cut(s)	155, 392
TseI	GCWGC	3 cut(s)	94, 252, 425
TspDTI	ATGAA	1 cut(s)	378
TspGWI	ACGGA	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.