Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Forward (+)

20671331 .. 20673200

Gene Structure 1870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g16820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAGGTGGGTCAGATGCAGAGACAGTGGGTTGACTACACTAAGTCCTTGTTTCTGGAGGGGCTTTTGGATGGGCAGTTTTTGCAGCTTCAACAGCTTCAAGATGACAGCAACCCAGATTTTGTTGTGGAAGTTGTATCTCTTTTCTTTGATGATTCTGAGAAGCTTCTCAATGAGATCACCAGAGCTCTAGAGCAGCCAGGTGTAGACTTCAAGAAAATTGGTGCCCATGTTCACCAGTTCAAGGGTAGCAGCTCCAGTGTTGGTGCACAAAGAGTTAAAAATGGCTGCATTGCTTTCCGCAACTTGTGCGAAGAACAGAACATTGAAGGGTGCATCAGATGTCTTCAACAATTAAAGCAAGAGTACCACCTTGTGAAGAACAAGCTTGAAACTCTCTTTGCAATGGAGCAACAAATTGTGGCAGCTGGTGGGTCAATTCCTATGTTGGAATTAAATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

155

Amino Acids

17.5

Weight (kDa)

4.92

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	44 - 128	4e-16	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	207
AciI	CCGC	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	457
AdeI	CACNNNGTG	1 cut(s)	376
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	7 cut(s)	92, 101, 214, 244, 329, 350, 392
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	7 cut(s)	88, 97, 166, 188, 255, 388, 428
AluI	AGCT	7 cut(s)	88, 97, 166, 188, 255, 388, 428
Alw21I	GWGCWC	2 cut(s)	190, 271
Alw26I	GTCTC	1 cut(s)	16
Alw44I	GTGCAC	1 cut(s)	267
ApaLI	GTGCAC	1 cut(s)	267
ApeKI	GCWGC	5 cut(s)	85, 196, 252, 288, 425
ApoI	RAATTY	1 cut(s)	457
AsuHPI	GGTGA	2 cut(s)	172, 227
BaeGI	GKGCMC	2 cut(s)	229, 271
BanI	GGYRCC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	2 cut(s)	190, 271
BbvI	GCAGC	5 cut(s)	97, 208, 264, 275, 437
BccI	CCATC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	1 cut(s)	191
BisI	GCNGC	5 cut(s)	86, 197, 253, 289, 426
BlsI	GCNGC	5 cut(s)	87, 198, 254, 290, 427
Bme1390I	CCNGG	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	2 cut(s)	6, 345
BpiI	GAAGAC	1 cut(s)	338
BpmI	CTGGAG	2 cut(s)	77, 241
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	2 cut(s)	238, 258
Bse3DI	GCAATG	2 cut(s)	291, 411
BseBI	CCWGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMI	GCAATG	2 cut(s)	291, 411
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	238, 258
BseSI	GKGCMC	2 cut(s)	229, 271
BseXI	GCAGC	5 cut(s)	97, 208, 264, 275, 437
BshNI	GGYRCC	1 cut(s)	224
BsiHKAI	GWGCWC	2 cut(s)	190, 271
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	16
Bsp1286I	GDGCHC	3 cut(s)	190, 229, 271
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	1 cut(s)	301
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	226
BspT107I	GGYRCC	1 cut(s)	224
BsrDI	GCAATG	2 cut(s)	291, 411
BsrI	ACTGG	2 cut(s)	238, 258
BssMI	GATC	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	27
BstAPI	GCANNNNNTGC	2 cut(s)	82, 309
BstDEI	CTNAG	2 cut(s)	42, 159
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 94, 309
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstSLI	GKGCMC	2 cut(s)	229, 271
BstV1I	GCAGC	5 cut(s)	97, 208, 264, 275, 437
BstV2I	GAAGAC	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	32, 265
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	1 cut(s)	230
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	2 cut(s)	42, 159
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
DraIII	CACNNNGTG	1 cut(s)	376
Ecl136II	GAGCTC	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	190
Eco53kI	GAGCTC	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	190
FaeI	CATG	1 cut(s)	233
FaiI	YATR	2 cut(s)	231, 446
FatI	CATG	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	5 cut(s)	86, 197, 253, 289, 426
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	5 cut(s)	86, 197, 253, 289, 426
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	5 cut(s)	86, 197, 253, 289, 426
GsuI	CTGGAG	2 cut(s)	77, 241
Hin1II	CATG	1 cut(s)	233
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	2 cut(s)	164, 386
HinfI	GANTC	1 cut(s)	155
HphI	GGTGA	2 cut(s)	172, 227
Hpy166II	GTNNAC	4 cut(s)	34, 208, 235, 269
Hpy188I	TCNGA	3 cut(s)	15, 160, 341
Hpy188III	TCNNGA	4 cut(s)	56, 101, 191, 214
Hpy8I	GTNNAC	4 cut(s)	34, 208, 235, 269
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4V	TGCA	6 cut(s)	19, 85, 269, 291, 336, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 94, 309
HpyF3I	CTNAG	2 cut(s)	42, 159
Hsp92II	CATG	1 cut(s)	233
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	2 cut(s)	260, 409
LpnPI	CCDG	8 cut(s)	41, 129, 186, 196, 213, 251, 271, 414
Lsp1109I	GCAGC	5 cut(s)	97, 208, 264, 275, 437
LweI	GCATC	2 cut(s)	6, 345
MaeI	CTAG	1 cut(s)	191
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	3 cut(s)	326, 338, 391
MhlI	GDGCHC	3 cut(s)	190, 229, 271
MluCI	AATT	6 cut(s)	219, 353, 417, 438, 452, 457
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	1 cut(s)	52
MseI	TTAA	3 cut(s)	279, 356, 455
MspA1I	CMGCKG	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	3 cut(s)	82, 94, 309
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	5 cut(s)	87, 198, 254, 290, 427
Psp124BI	GAGCTC	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
SacI	GAGCTC	1 cut(s)	190
SaqAI	TTAA	3 cut(s)	279, 356, 455
SatI	GCNGC	5 cut(s)	86, 197, 253, 289, 426
Sau3AI	GATC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	3 cut(s)	190, 229, 271
SfaNI	GCATC	2 cut(s)	6, 345
Sse9I	AATT	6 cut(s)	219, 353, 417, 438, 452, 457
SsiI	CCGC	1 cut(s)	301
SspMI	CTAG	1 cut(s)	191
SstI	GAGCTC	1 cut(s)	190
StyD4I	CCNGG	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	27
TasI	AATT	6 cut(s)	219, 353, 417, 438, 452, 457
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	3 cut(s)	279, 356, 455
Tru9I	TTAA	3 cut(s)	279, 356, 455
TscAI	CASTG	2 cut(s)	32, 265
TseI	GCWGC	5 cut(s)	85, 196, 252, 288, 425
TspRI	CASTG	2 cut(s)	32, 265
VneI	GTGCAC	1 cut(s)	267
XapI	RAATTY	1 cut(s)	457
XbaI	TCTAGA	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.