Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Forward (+)

39156269 .. 39157646

Gene Structure 1378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG227800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAGGTGGGTCAGATGCAGAGACAGTGGGTTGACTACACAAAGTCCTTGTTTCTGGAGGGGCTTTTGGATGGACAGTTTCTGCAGCTTCAACAGCTTCAAGACGAGAGCAACCCAGATTTTGTTGTGGAAGTGGTGTCTCTATTCTTTGATGATTCTGAGAAGCTTCTCAATGATATCACCCGAGCTCTTGTTGGTGCACAAAGAGTTAAAAATGGCTGCATTGCTTTCCGCAACTTCTGCGAGGAACAAAACATTGAAGGGTGTATCAGATGTCTTCAACAATTAAAGCAAGAGTACTACCTTGTGAAGAACAAGCTTGAAACTCTTTTCGCAATGGAGCAACAAATTGTGGCAGCTGGTGGGTCAATTCCTATGTTGGAATTAAGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

131

Amino Acids

15.08

Weight (kDa)

4.46

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	232
AfaI	GTAC	1 cut(s)	299
AgsI	TTSAA	5 cut(s)	92, 101, 260, 281, 323
AluBI	AGCT	6 cut(s)	88, 97, 166, 188, 319, 359
AluI	AGCT	6 cut(s)	88, 97, 166, 188, 319, 359
Alw21I	GWGCWC	2 cut(s)	190, 202
Alw26I	GTCTC	2 cut(s)	16, 144
Alw44I	GTGCAC	1 cut(s)	198
AlwNI	CAGNNNCTG	1 cut(s)	82
Ama87I	CYCGRG	1 cut(s)	183
ApaLI	GTGCAC	1 cut(s)	198
ApeKI	GCWGC	3 cut(s)	85, 219, 356
AsuHPI	GGTGA	1 cut(s)	172
AvaI	CYCGRG	1 cut(s)	183
BaeGI	GKGCMC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	2 cut(s)	190, 202
BbvI	GCAGC	3 cut(s)	97, 206, 368
BccI	CCATC	1 cut(s)	65
BcoDI	GTCTC	2 cut(s)	16, 144
BfmI	CTRYAG	1 cut(s)	83
BisI	GCNGC	3 cut(s)	86, 220, 357
BlsI	GCNGC	3 cut(s)	87, 221, 358
BmcAI	AGTACT	1 cut(s)	299
BmeT110I	CYCGRG	1 cut(s)	183
BmsI	GCATC	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	269
BpmI	CTGGAG	1 cut(s)	77
Bse3DI	GCAATG	2 cut(s)	222, 342
BseGI	GGATG	1 cut(s)	76
BseMI	GCAATG	2 cut(s)	222, 342
BseMII	CTCAG	1 cut(s)	150
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	3 cut(s)	97, 206, 368
BsiHKAI	GWGCWC	2 cut(s)	190, 202
BsiHKCI	CYCGRG	1 cut(s)	183
BsmAI	GTCTC	2 cut(s)	16, 144
BsoBI	CYCGRG	1 cut(s)	183
Bsp1286I	GDGCHC	2 cut(s)	190, 202
BspACI	CCGC	1 cut(s)	232
BspCNI	CTCAG	1 cut(s)	151
BspMAI	CTGCAG	1 cut(s)	87
BsrDI	GCAATG	2 cut(s)	222, 342
Bst4CI	ACNGT	2 cut(s)	27, 78
BstAPI	GCANNNNNTGC	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	76
BstMAI	GTCTC	2 cut(s)	16, 144
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 240
BstSFI	CTRYAG	1 cut(s)	83
BstSLI	GKGCMC	1 cut(s)	202
BstV1I	GCAGC	3 cut(s)	97, 206, 368
BstV2I	GAAGAC	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	32
CaiI	CAGNNNCTG	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	298
CviJI	RGCY	8 cut(s)	64, 88, 97, 166, 188, 219, 319, 359
CviKI_1	RGCY	8 cut(s)	64, 88, 97, 166, 188, 219, 319, 359
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	188
EcoRV	GATATC	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	190
FaiI	YATR	1 cut(s)	377
Fnu4HI	GCNGC	3 cut(s)	86, 220, 357
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	3 cut(s)	86, 220, 357
GluI	GCNGC	3 cut(s)	86, 220, 357
GsuI	CTGGAG	1 cut(s)	77
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	2 cut(s)	164, 317
HinfI	GANTC	1 cut(s)	155
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	2 cut(s)	34, 200
Hpy188I	TCNGA	3 cut(s)	15, 160, 272
Hpy188III	TCNNGA	2 cut(s)	56, 101
Hpy8I	GTNNAC	2 cut(s)	34, 200
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	2 cut(s)	27, 78
HpyCH4V	TGCA	4 cut(s)	19, 85, 200, 222
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 240
HpyF3I	CTNAG	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	3 cut(s)	41, 129, 345
Lsp1109I	GCAGC	3 cut(s)	97, 206, 368
LweI	GCATC	1 cut(s)	6
MboII	GAAGA	2 cut(s)	269, 322
MhlI	GDGCHC	2 cut(s)	190, 202
MluCI	AATT	4 cut(s)	284, 348, 369, 383
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	2 cut(s)	52, 238
MseI	TTAA	3 cut(s)	210, 287, 386
MspA1I	CMGCKG	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	94, 240
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	87, 221, 358
Psp124BI	GAGCTC	1 cut(s)	190
PstI	CTGCAG	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	82
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SacI	GAGCTC	1 cut(s)	190
SaqAI	TTAA	3 cut(s)	210, 287, 386
SatI	GCNGC	3 cut(s)	86, 220, 357
ScaI	AGTACT	1 cut(s)	299
SduI	GDGCHC	2 cut(s)	190, 202
SetI	ASST	8 cut(s)	9, 90, 99, 168, 190, 306, 321, 361
SfaNI	GCATC	1 cut(s)	6
SfcI	CTRYAG	1 cut(s)	83
Sse9I	AATT	4 cut(s)	284, 348, 369, 383
SsiI	CCGC	1 cut(s)	232
SstI	GAGCTC	1 cut(s)	190
TaaI	ACNGT	2 cut(s)	27, 78
TasI	AATT	4 cut(s)	284, 348, 369, 383
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	3 cut(s)	210, 287, 386
Tru9I	TTAA	3 cut(s)	210, 287, 386
TscAI	CASTG	1 cut(s)	32
TseI	GCWGC	3 cut(s)	85, 219, 356
TspRI	CASTG	1 cut(s)	32
VneI	GTGCAC	1 cut(s)	198
ZrmI	AGTACT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.