Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Forward (+)

10221518 .. 10223297

Gene Structure 1780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0126900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCGCTTCATGGATCTAGTTTCTGCTTAAATGGAAATCTTTCTTTTAAGGAGTTTAACAGCTTGCCGTGTGCATGTTATAGTTCGGGGATGCTTCATCATCTGTCTTTACCATCGAGGAAATACAATTTAGTTGTAGCAAATACTCTTGAAAGAGGGCATAGATTTCAGTTTTTGCCTGGAGATGGTCGTCTCAAATTGCAAACTGAACAATCCACATCCTCTCTTCCCACCTCTGGTTTGCGATCGTTAAAACCATGCAGTGCGAAATGTGATGATTCAAAGGATAGCTCAGTTAGCGAAAATATCATATTGGATGCAGAAACCTTAACGCGGGATCTAGATATTGCCATTGCGGAGGAGAACTATGCTAAGGCAGCAGAAATTAGGGATAGACTAAGACTTCTGCGGGAGGATAGTATGACTTCTGTTTTAGCAGCAAATTCTCGATTTTACGAGTCATTCAGAATAGGGGATCTGGCTGCAATGCAATCTCTTTGGGCCAAACGGGATGAAGTCTGTTGTGTACACCCGGGTGCACGTGGGATATATGGTTATGAGGATGTTATGACTAGCTGGGACTACGTATGGGCGAACTATGAATTTCCACTACAGATTGAGCTGAAGGATGTAAACGCTAATGTTAGAGGGGATATGGGGTTTGTTTCTTGTGTGGAATTGGTCAAGACAAAAGGTAGCAGTTGGGGAGGACAGTTTGTAACAAATGTGTTCGAGAGGATTGATGGTCAATGGTTTATCTCTGTTCATCATGCTTCACCTATAGACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009927 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023052 GO:0023056 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0080036 GO:0080038 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

263

Amino Acids

29.42

Weight (kDa)

5.66

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SnoaL_3	PF13474	144 - 260	6.3e-24	SnoaL-like domain
DUF4440	PF14534	145 - 251	3.8e-06	Domain of unknown function (DUF4440)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	334
AciI	CCGC	3 cut(s)	334, 356, 409
AclWI	GGATC	3 cut(s)	22, 345, 483
AcsI	RAATTY	2 cut(s)	442, 602
AcuI	CTGAAG	1 cut(s)	644
AcvI	CACGTG	1 cut(s)	542
AfaI	GTAC	1 cut(s)	528
AfiI	CCNNNNNNNGG	3 cut(s)	185, 236, 333
AgsI	TTSAA	2 cut(s)	152, 282
AjnI	CCWGG	1 cut(s)	178
AleI	CACNNNNGTG	1 cut(s)	534
AluBI	AGCT	4 cut(s)	63, 291, 576, 622
AluI	AGCT	4 cut(s)	63, 291, 576, 622
Alw21I	GWGCWC	1 cut(s)	541
Alw26I	GTCTC	1 cut(s)	197
Alw44I	GTGCAC	1 cut(s)	537
AlwI	GGATC	3 cut(s)	22, 345, 483
Ama87I	CYCGRG	1 cut(s)	532
AoxI	GGCC	1 cut(s)	501
ApaLI	GTGCAC	1 cut(s)	537
ApeKI	GCWGC	3 cut(s)	377, 437, 482
ApoI	RAATTY	2 cut(s)	442, 602
Asp700I	GAANNNNTTC	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	501
AsuC2I	CCSGG	2 cut(s)	533, 534
AsuHPI	GGTGA	1 cut(s)	768
AvaI	CYCGRG	1 cut(s)	532
BaeGI	GKGCMC	1 cut(s)	541
BbrPI	CACGTG	1 cut(s)	542
Bbv12I	GWGCWC	1 cut(s)	541
BbvI	GCAGC	3 cut(s)	389, 449, 469
BccI	CCATC	3 cut(s)	121, 179, 737
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	180
BcnI	CCSGG	2 cut(s)	533, 534
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	3 cut(s)	18, 341, 573
BfmI	CTRYAG	2 cut(s)	611, 780
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	3 cut(s)	378, 438, 483
BlsI	GCNGC	3 cut(s)	379, 439, 484
Bme1390I	CCNGG	3 cut(s)	180, 533, 534
BmeT110I	CYCGRG	1 cut(s)	532
BmgT120I	GGNCC	1 cut(s)	501
BmrFI	CCNGG	3 cut(s)	180, 533, 534
BmsI	GCATC	2 cut(s)	81, 307
BpmI	CTGGAG	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	372
BpuMI	CCSGG	2 cut(s)	533, 534
BsaAI	YACGTR	2 cut(s)	542, 586
BsaJI	CCNNGG	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 236, 333
Bse3DI	GCAATG	2 cut(s)	351, 492
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	6 cut(s)	96, 218, 322, 517, 568, 634
BseLI	CCNNNNNNNGG	3 cut(s)	185, 236, 333
BseMI	GCAATG	2 cut(s)	351, 492
BseMII	CTCAG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	374
BseSI	GKGCMC	1 cut(s)	541
BseXI	GCAGC	3 cut(s)	389, 449, 469
BseYI	CCCAGC	1 cut(s)	576
Bsh1236I	CGCG	1 cut(s)	334
Bsh1285I	CGRYCG	1 cut(s)	248
BshFI	GGCC	1 cut(s)	503
BsiEI	CGRYCG	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	541
BsiHKCI	CYCGRG	1 cut(s)	532
BsiSI	CCGG	1 cut(s)	533
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	3 cut(s)	185, 236, 333
BsmAI	GTCTC	1 cut(s)	197
BsmBI	CGTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	593
BsnI	GGCC	1 cut(s)	503
BsoBI	CYCGRG	1 cut(s)	532
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp1407I	TGTACA	1 cut(s)	526
Bsp143I	GATC	4 cut(s)	14, 245, 337, 475
BspACI	CCGC	3 cut(s)	334, 356, 409
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	1 cut(s)	305
BspFNI	CGCG	1 cut(s)	334
BspPI	GGATC	3 cut(s)	22, 345, 483
BsrDI	GCAATG	2 cut(s)	351, 492
BsrGI	TGTACA	1 cut(s)	526
BssECI	CCNNGG	1 cut(s)	532
BssMI	GATC	4 cut(s)	14, 245, 337, 475
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	714
Bst6I	CTCTTC	1 cut(s)	231
BstAUI	TGTACA	1 cut(s)	526
BstBAI	YACGTR	2 cut(s)	542, 586
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	3 cut(s)	292, 372, 398
BstF5I	GGATG	6 cut(s)	96, 218, 322, 517, 568, 634
BstFNI	CGCG	1 cut(s)	334
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	4 cut(s)	17, 248, 340, 478
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	4 cut(s)	14, 245, 337, 475
BstMCI	CGRYCG	1 cut(s)	248
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 377
BstNI	CCWGG	1 cut(s)	180
BstNSI	RCATGY	1 cut(s)	78
BstSCI	CCNGG	3 cut(s)	178, 531, 532
BstSFI	CTRYAG	2 cut(s)	611, 780
BstSLI	GKGCMC	1 cut(s)	541
BstSNI	TACGTA	1 cut(s)	586
BstUI	CGCG	1 cut(s)	334
BstV1I	GCAGC	3 cut(s)	389, 449, 469
BstX2I	RGATCY	3 cut(s)	14, 337, 475
BstYI	RGATCY	3 cut(s)	14, 337, 475
BsuRI	GGCC	1 cut(s)	503
BtsCI	GGATG	6 cut(s)	96, 218, 322, 517, 568, 634
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	65
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	501
Cfr9I	CCCGGG	1 cut(s)	532
Csp6I	GTAC	1 cut(s)	527
CviAII	CATG	4 cut(s)	11, 75, 258, 770
CviJI	RGCY	6 cut(s)	63, 291, 482, 503, 576, 622
CviKI_1	RGCY	6 cut(s)	63, 291, 482, 503, 576, 622
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	3 cut(s)	292, 372, 398
DpnI	GATC	4 cut(s)	16, 247, 339, 477
DpnII	GATC	4 cut(s)	14, 245, 337, 475
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco105I	TACGTA	1 cut(s)	586
Eco57I	CTGAAG	1 cut(s)	644
Eco72I	CACGTG	1 cut(s)	542
Eco88I	CYCGRG	1 cut(s)	532
EcoRII	CCWGG	1 cut(s)	178
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	4 cut(s)	14, 78, 261, 773
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	4 cut(s)	10, 74, 257, 769
FauI	CCCGC	2 cut(s)	327, 402
Fnu4HI	GCNGC	3 cut(s)	378, 438, 483
FokI	GGATG	6 cut(s)	103, 205, 329, 524, 575, 641
Fsp4HI	GCNGC	3 cut(s)	378, 438, 483
FspBI	CTAG	3 cut(s)	18, 341, 573
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	378, 438, 483
GsaI	CCCAGC	1 cut(s)	580
GsuI	CTGGAG	1 cut(s)	201
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	503
HapII	CCGG	1 cut(s)	533
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	4 cut(s)	14, 78, 261, 773
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	278, 458
HpaII	CCGG	1 cut(s)	533
HphI	GGTGA	1 cut(s)	768
Hpy166II	GTNNAC	4 cut(s)	527, 529, 539, 634
Hpy188I	TCNGA	1 cut(s)	467
Hpy188III	TCNNGA	5 cut(s)	149, 341, 447, 685, 733
Hpy8I	GTNNAC	4 cut(s)	527, 529, 539, 634
HpyAV	CCTTC	1 cut(s)	619
HpyCH4III	ACNGT	1 cut(s)	714
HpyCH4IV	ACGT	2 cut(s)	541, 585
HpyCH4V	TGCA	7 cut(s)	74, 202, 261, 320, 485, 490, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 377
HpyF3I	CTNAG	3 cut(s)	292, 372, 398
HpySE526I	ACGT	2 cut(s)	541, 585
Hsp92II	CATG	4 cut(s)	14, 78, 261, 773
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	4 cut(s)	14, 245, 337, 475
LpnPI	CCDG	6 cut(s)	165, 192, 222, 464, 546, 562
Lsp1109I	GCAGC	3 cut(s)	389, 449, 469
LweI	GCATC	2 cut(s)	81, 307
MaeI	CTAG	3 cut(s)	18, 341, 573
MaeII	ACGT	2 cut(s)	541, 585
MaeIII	GTNAC	1 cut(s)	718
MalI	GATC	4 cut(s)	16, 247, 339, 477
MboI	GATC	4 cut(s)	14, 245, 337, 475
MboII	GAAGA	1 cut(s)	218
MflI	RGATCY	3 cut(s)	14, 337, 475
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	6 cut(s)	127, 197, 384, 442, 602, 677
MlyI	GAGTC	1 cut(s)	467
MroXI	GAANNNNTTC	1 cut(s)	40
MseI	TTAA	5 cut(s)	29, 48, 57, 251, 329
MslI	CAYNNNNRTG	1 cut(s)	534
MspI	CCGG	1 cut(s)	533
MspR9I	CCNGG	3 cut(s)	180, 533, 534
MvaI	CCWGG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	334
MwoI	GCNNNNNNNGC	2 cut(s)	297, 377
NciI	CCSGG	2 cut(s)	533, 534
NdeII	GATC	4 cut(s)	14, 245, 337, 475
NlaIII	CATG	4 cut(s)	14, 78, 261, 773
NspI	RCATGY	1 cut(s)	78
OliI	CACNNNNGTG	1 cut(s)	534
PdmI	GAANNNNTTC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	3 cut(s)	379, 439, 484
Ple19I	CGATCG	1 cut(s)	248
PleI	GAGTC	1 cut(s)	466
PmaCI	CACGTG	1 cut(s)	542
PmlI	CACGTG	1 cut(s)	542
PpsI	GAGTC	1 cut(s)	466
Ppu21I	YACGTR	2 cut(s)	542, 586
Psp6I	CCWGG	1 cut(s)	178
PspCI	CACGTG	1 cut(s)	542
PspFI	CCCAGC	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	501
PsuI	RGATCY	3 cut(s)	14, 337, 475
PvuI	CGATCG	1 cut(s)	248
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	5 cut(s)	29, 48, 57, 251, 329
SatI	GCNGC	3 cut(s)	378, 438, 483
Sau3AI	GATC	4 cut(s)	14, 245, 337, 475
Sau96I	GGNCC	1 cut(s)	501
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	3 cut(s)	180, 533, 534
SduI	GDGCHC	1 cut(s)	541
SfaNI	GCATC	2 cut(s)	81, 307
SfcI	CTRYAG	2 cut(s)	611, 780
SmaI	CCCGGG	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	534
SnaBI	TACGTA	1 cut(s)	586
Sse9I	AATT	6 cut(s)	127, 197, 384, 442, 602, 677
SsiI	CCGC	3 cut(s)	334, 356, 409
SspMI	CTAG	3 cut(s)	18, 341, 573
StyD4I	CCNGG	3 cut(s)	178, 531, 532
TaaI	ACNGT	1 cut(s)	714
TaiI	ACGT	2 cut(s)	544, 588
TaqI	TCGA	3 cut(s)	116, 448, 732
TasI	AATT	6 cut(s)	127, 197, 384, 442, 602, 677
TatI	WGTACW	1 cut(s)	526
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	5 cut(s)	29, 48, 57, 251, 329
Tru9I	TTAA	5 cut(s)	29, 48, 57, 251, 329
TscAI	CASTG	1 cut(s)	268
TseI	GCWGC	3 cut(s)	377, 437, 482
TspDTI	ATGAA	4 cut(s)	86, 528, 615, 755
TspMI	CCCGGG	1 cut(s)	532
TspRI	CASTG	1 cut(s)	268
VneI	GTGCAC	1 cut(s)	537
XapI	RAATTY	2 cut(s)	442, 602
XbaI	TCTAGA	1 cut(s)	340
XceI	RCATGY	1 cut(s)	78
XmaI	CCCGGG	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	40
XspI	CTAG	3 cut(s)	18, 341, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.