Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Reverse (-)

3662065 .. 3667256

Gene Structure 5192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG052200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCTGGTGTGTCTCAGTTGCAGAAGCAGTTTGGTGACTACAAAGCCTCACTCTTTCAAGAGGGGGTTCTGGATGAACAGTTTGACCAACTTCAGGGACTACAAGATGAGAGCAACCCAAATTTTGTGGTTGAAGTGGTGTCTCTCTTCTTTCAAGATTCTGAGAGGCTTCTCAATGACCTGACCAAGACTCTAAACCAGCAGGGTGTTGACTTCAAAAAGGTCGGTGCCAATGTTCATCAGTTGAAGGGTAGCAGCTCCAGGTACTTGGCTTGTTTTCTCTTTCTTTCTTTCTTTTTTCTTTTTTTTACCGCTTTAAAAATCATATCTATAAAAAATGTCTCATGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

117

Amino Acids

13.29

Weight (kDa)

5.23

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	45 - 87	1.9e-06	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AciI	CCGC	1 cut(s)	312
AcsI	RAATTY	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	5 cut(s)	59, 134, 155, 217, 247
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	1 cut(s)	258
AluI	AGCT	1 cut(s)	258
Alw26I	GTCTC	3 cut(s)	18, 147, 346
ApeKI	GCWGC	1 cut(s)	255
ApoI	RAATTY	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	267
BciT130I	CCWGG	1 cut(s)	262
BcoDI	GTCTC	3 cut(s)	18, 147, 346
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	262
BpmI	CTGGAG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	262
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	2 cut(s)	29, 153
BseXI	GCAGC	1 cut(s)	267
BshNI	GGYRCC	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	3 cut(s)	18, 147, 346
BsmFI	GGGAC	1 cut(s)	111
BspACI	CCGC	1 cut(s)	312
BspCNI	CTCAG	2 cut(s)	28, 154
BspLI	GGNNCC	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	1 cut(s)	152
BstDEI	CTNAG	2 cut(s)	15, 162
BstF5I	GGATG	1 cut(s)	79
BstMAI	GTCTC	3 cut(s)	18, 147, 346
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	267
BstXI	CCANNNNNNTGG	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	265
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	1 cut(s)	345
CviJI	RGCY	5 cut(s)	5, 47, 169, 258, 272
CviKI_1	RGCY	5 cut(s)	5, 47, 169, 258, 272
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	2 cut(s)	15, 162
DraI	TTTAAA	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	260
FaeI	CATG	1 cut(s)	348
FaiI	YATR	3 cut(s)	326, 332, 346
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	1 cut(s)	344
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	256
GluI	GCNGC	1 cut(s)	256
GsuI	CTGGAG	1 cut(s)	244
Hin1II	CATG	1 cut(s)	348
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	158, 190
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	3 cut(s)	59, 71, 155
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	22
HpyF3I	CTNAG	2 cut(s)	15, 162
Hsp92II	CATG	1 cut(s)	348
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	7 cut(s)	56, 80, 188, 194, 212, 247, 274
Lsp1109I	GCAGC	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	35
MboII	GAAGA	1 cut(s)	139
MluCI	AATT	1 cut(s)	121
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	3 cut(s)	55, 58, 159
MseI	TTAA	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	262
NlaIII	CATG	1 cut(s)	348
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	257
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	229
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	262
SetI	ASST	4 cut(s)	183, 225, 260, 266
Sse9I	AATT	1 cut(s)	121
SsiI	CCGC	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	81
TasI	AATT	1 cut(s)	121
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	1 cut(s)	255
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	2 cut(s)	90, 227
XapI	RAATTY	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.