RLG00000036750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001256
Physical Location & Seq
Reverse (-)
84137940 .. 84138525
586 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036750

Sequence Viewer

Length: 474 bp
ATGGCTCTCAACCCTAGCAGCCTTGGGCTAAGGCTTCAATGGCGATGTTTATCGTCAATCACTTTCTCAATCTATGCCAACTCTTTACTCGTTGGGGAGAGAGGTGGAAACTACAAAGAAGGCGTCGGCGGCAGACCTCCAAGGACGAGCCTCGTGCGCTTTCCTCCAAGCGGCAACGGTGGCTTACTCCTAGAAGCGGGCAAAGTTTGCGGCAATTGGCGGTATGGTGCTCCTGCATCTGCCGTTTCTGATGAATCGGATCTCCGACTTGCCTCAAGATGGGGGTGGATAGGAGGTTGGCCCTCGGGTTTGAACTTGAGGAGGCCTTGTTCTGGCGTCATCGAGCTCTGGGATCTGAGGAAAATGGTGAGGCCGGCGGTTCACCGCCGAAGCAAACTTGTAGAGGAAGAAGAGTCTGATGACGGTGACGAGATGGCCTGCATTTTGTATGTGCGGCCAAGGTGGAGGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.42

Weight (kDa)

9.5

Isoelectric Point (pI)

73.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 129, 171, 197, 210, 220, 377, 385, 454
AclWI GGATC 2 cut(s) 267, 360
AcoI YGGCCR 1 cut(s) 455
AcyI GRCGYC 2 cut(s) 123, 336
AfiI CCNNNNNNNGG 4 cut(s) 170, 196, 279, 332
AgsI TTSAA 2 cut(s) 38, 313
AloI GAACNNNNNNTCC 2 cut(s) 313, 345
AluBI AGCT 1 cut(s) 346
AluI AGCT 1 cut(s) 346
Alw21I GWGCWC 2 cut(s) 232, 348
AlwI GGATC 2 cut(s) 267, 360
Ama87I CYCGRG 1 cut(s) 304
AoxI GGCC 6 cut(s) 299, 323, 371, 435, 455, 467
ApeKI GCWGC 1 cut(s) 18
ArsI GACNNNNNNTTYG 2 cut(s) 108, 140
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 300
AsuHPI GGTGA 3 cut(s) 374, 379, 437
AvaI CYCGRG 1 cut(s) 304
BanII GRGCYC 1 cut(s) 348
BauI CACGAG 1 cut(s) 152
Bbv12I GWGCWC 2 cut(s) 232, 348
BbvI GCAGC 1 cut(s) 30
BccI CCATC 2 cut(s) 273, 427
BceAI ACGGC 2 cut(s) 227, 454
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BfaI CTAG 2 cut(s) 15, 191
BisI GCNGC 5 cut(s) 19, 130, 172, 211, 455
BlsI GCNGC 5 cut(s) 20, 131, 173, 212, 456
BmeT110I CYCGRG 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 300
BmsI GCATC 1 cut(s) 245
Bpu10I CCTNAGC 1 cut(s) 29
BpuEI CTTGAG 2 cut(s) 259, 337
BsaBI GATNNNNATC 1 cut(s) 49
BsaHI GRCGYC 2 cut(s) 123, 336
BsaJI CCNNGG 4 cut(s) 22, 140, 303, 458
BsaXI ACNNNNNCTCC 2 cut(s) 313, 343
Bsc4I CCNNNNNNNGG 4 cut(s) 170, 196, 279, 332
Bse118I RCCGGY 1 cut(s) 373
Bse8I GATNNNNATC 1 cut(s) 49
BseDI CCNNGG 4 cut(s) 22, 140, 303, 458
BseJI GATNNNNATC 1 cut(s) 49
BseLI CCNNNNNNNGG 4 cut(s) 170, 196, 279, 332
BseMII CTCAG 1 cut(s) 347
BseRI GAGGAG 1 cut(s) 334
BseXI GCAGC 1 cut(s) 30
BshFI GGCC 6 cut(s) 301, 325, 373, 437, 457, 469
BsiHKAI GWGCWC 2 cut(s) 232, 348
BsiHKCI CYCGRG 1 cut(s) 304
BsiSI CCGG 1 cut(s) 374
BslI CCNNNNNNNGG 4 cut(s) 170, 196, 279, 332
BsnI GGCC 6 cut(s) 301, 325, 373, 437, 457, 469
BsoBI CYCGRG 1 cut(s) 304
Bsp1286I GDGCHC 2 cut(s) 232, 348
Bsp143I GATC 2 cut(s) 259, 352
BspACI CCGC 8 cut(s) 129, 171, 197, 210, 220, 377, 385, 454
BspANI GGCC 6 cut(s) 301, 325, 373, 437, 457, 469
BspCNI CTCAG 1 cut(s) 348
BspPI GGATC 2 cut(s) 267, 360
BsrFI RCCGGY 1 cut(s) 373
BssAI RCCGGY 1 cut(s) 373
BssECI CCNNGG 4 cut(s) 22, 140, 303, 458
BssMI GATC 2 cut(s) 259, 352
BssNI GRCGYC 2 cut(s) 123, 336
BssSI CACGAG 1 cut(s) 152
BssT1I CCWWGG 3 cut(s) 22, 140, 458
Bst2BI CACGAG 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 179, 425
Bst6I CTCTTC 1 cut(s) 405
BstACI GRCGYC 2 cut(s) 123, 336
BstAPI GCANNNNNTGC 1 cut(s) 207
BstC8I GCNNGC 3 cut(s) 199, 375, 439
BstDEI CTNAG 2 cut(s) 29, 356
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 2 cut(s) 262, 355
BstMBI GATC 2 cut(s) 259, 352
BstMWI GCNNNNNNNGC 5 cut(s) 40, 129, 156, 180, 207
BstV1I GCAGC 1 cut(s) 30
BstX2I RGATCY 2 cut(s) 259, 352
BstYI RGATCY 2 cut(s) 259, 352
BsuRI GGCC 6 cut(s) 301, 325, 373, 437, 457, 469
BtgZI GCGATG 1 cut(s) 58
Cac8I GCNNGC 3 cut(s) 199, 375, 439
CfoI GCGC 1 cut(s) 159
Cfr10I RCCGGY 1 cut(s) 373
Cfr13I GGNCC 1 cut(s) 300
CseI GACGC 2 cut(s) 112, 325
DdeI CTNAG 2 cut(s) 29, 356
DpnI GATC 2 cut(s) 261, 354
DpnII GATC 2 cut(s) 259, 352
EaeI YGGCCR 1 cut(s) 455
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Ecl136II GAGCTC 1 cut(s) 346
Eco130I CCWWGG 3 cut(s) 22, 140, 458
Eco147I AGGCCT 1 cut(s) 325
Eco24I GRGCYC 1 cut(s) 348
Eco53kI GAGCTC 1 cut(s) 346
Eco88I CYCGRG 1 cut(s) 304
EcoICRI GAGCTC 1 cut(s) 346
EcoT14I CCWWGG 3 cut(s) 22, 140, 458
EcoT38I GRGCYC 1 cut(s) 348
ErhI CCWWGG 3 cut(s) 22, 140, 458
FaiI YATR 3 cut(s) 75, 225, 450
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 5 cut(s) 19, 130, 172, 211, 455
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 5 cut(s) 19, 130, 172, 211, 455
FspBI CTAG 2 cut(s) 15, 191
GlaI GCGC 1 cut(s) 158
GluI GCNGC 5 cut(s) 19, 130, 172, 211, 455
HaeIII GGCC 6 cut(s) 301, 325, 373, 437, 457, 469
HapII CCGG 1 cut(s) 374
HgaI GACGC 2 cut(s) 112, 325
HhaI GCGC 1 cut(s) 159
Hin1I GRCGYC 2 cut(s) 123, 336
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HinfI GANTC 2 cut(s) 254, 413
HpaII CCGG 1 cut(s) 374
HphI GGTGA 3 cut(s) 374, 379, 437
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 5 cut(s) 250, 259, 266, 357, 418
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 1 cut(s) 382
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 2 cut(s) 179, 425
HpyCH4V TGCA 2 cut(s) 236, 441
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 129, 156, 180, 207
HpyF3I CTNAG 2 cut(s) 29, 356
Hsp92I GRCGYC 2 cut(s) 123, 336
HspAI GCGC 1 cut(s) 157
KroI GCCGGC 1 cut(s) 373
KroNI GCCGGC 1 cut(s) 375
Kzo9I GATC 2 cut(s) 259, 352
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 5 cut(s) 246, 318, 334, 387, 451
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 1 cut(s) 245
MaeI CTAG 2 cut(s) 15, 191
MaeIII GTNAC 1 cut(s) 425
MalI GATC 2 cut(s) 261, 354
MboI GATC 2 cut(s) 259, 352
MboII GAAGA 2 cut(s) 419, 422
MfeI CAATTG 1 cut(s) 214
MflI RGATCY 2 cut(s) 259, 352
MhlI GDGCHC 2 cut(s) 232, 348
MluCI AATT 1 cut(s) 214
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 1 cut(s) 289
MroNI GCCGGC 1 cut(s) 373
MspI CCGG 1 cut(s) 374
MunI CAATTG 1 cut(s) 214
MwoI GCNNNNNNNGC 5 cut(s) 40, 129, 156, 180, 207
NaeI GCCGGC 1 cut(s) 375
NdeII GATC 2 cut(s) 259, 352
NgoMIV GCCGGC 1 cut(s) 373
NmuCI GTSAC 1 cut(s) 425
PceI AGGCCT 1 cut(s) 325
PdiI GCCGGC 1 cut(s) 375
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 5 cut(s) 20, 131, 173, 212, 456
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
Psp124BI GAGCTC 1 cut(s) 348
PspPI GGNCC 1 cut(s) 300
PsuI RGATCY 2 cut(s) 259, 352
SacI GAGCTC 1 cut(s) 348
SatI GCNGC 5 cut(s) 19, 130, 172, 211, 455
Sau3AI GATC 2 cut(s) 259, 352
Sau96I GGNCC 1 cut(s) 300
SchI GAGTC 1 cut(s) 422
SduI GDGCHC 2 cut(s) 232, 348
SetI ASST 5 cut(s) 106, 139, 298, 348, 464
SfaNI GCATC 1 cut(s) 245
SmlI CTYRAG 2 cut(s) 274, 316
SmoI CTYRAG 2 cut(s) 274, 316
Sse9I AATT 1 cut(s) 214
SseBI AGGCCT 1 cut(s) 325
SsiI CCGC 8 cut(s) 129, 171, 197, 210, 220, 377, 385, 454
SspMI CTAG 2 cut(s) 15, 191
SstI GAGCTC 1 cut(s) 348
StuI AGGCCT 1 cut(s) 325
StyI CCWWGG 3 cut(s) 22, 140, 458
TaaI ACNGT 2 cut(s) 179, 425
TaqI TCGA 1 cut(s) 342
TasI AATT 1 cut(s) 214
TauI GCSGC 4 cut(s) 132, 174, 213, 457
TfiI GAWTC 1 cut(s) 254
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 1 cut(s) 18
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 1 cut(s) 267
XspI CTAG 2 cut(s) 15, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.