Rw1G024970

histidine-containing phosphotransfer protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
51395242 .. 51400637
5396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G024970.1

Sequence Viewer

Length: 423 bp
ATGGCTGGTGTGTCTCAGTTGCAGAAGCAGTTTGTTGACTACAAAGCCTCACTCTTTCAAGAGGGGGTTCTGGATGAACAGTTTGACCAACTTCAGGGACTACAAGATGAGAGCAACCCAAATTTTGTGGTTGAAGTGGTGTCTCTCTTCTTTCAAGATTCTGAGAGGCTTCTCAATGACCTGACCAAGACTCTAAACCAGCAGGGTGTTGACTTCAAAAAGGTCGGTGCCAATGTATTATGCTTGAAGATTTGCCGAATGCACGTTGCCATTTGCTTTGAAAGAGTTTGTCCATATCAAAGAAGGGTTGCAGTTGTGGAGAAGAAATTTTGTTATGTCTTACAGAACATAAGAGAAGCACAGTTGACAATCTCATCCAGGTTTGACCGGTTAATCCAGAGACAAATTAAGAAACAAAGTTGA

Protein Analysis

140

Amino Acids

16.27

Weight (kDa)

8.63

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 227
AcsI RAATTY 2 cut(s) 121, 326
AcuI CTGAAG 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 94
AgeI ACCGGT 1 cut(s) 387
AgsI TTSAA 6 cut(s) 59, 134, 155, 217, 247, 281
AjnI CCWGG 1 cut(s) 377
Alw26I GTCTC 3 cut(s) 18, 147, 394
ApoI RAATTY 2 cut(s) 121, 326
AsiGI ACCGGT 1 cut(s) 387
BanI GGYRCC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 379
BcoDI GTCTC 3 cut(s) 18, 147, 394
Bme1390I CCNGG 1 cut(s) 379
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 379
BsaWI WCCGGW 1 cut(s) 387
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse118I RCCGGY 1 cut(s) 387
BseBI CCWGG 1 cut(s) 379
BseGI GGATG 2 cut(s) 79, 374
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMII CTCAG 2 cut(s) 29, 153
BshNI GGYRCC 1 cut(s) 227
BshTI ACCGGT 1 cut(s) 387
BsiSI CCGG 1 cut(s) 388
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 3 cut(s) 18, 147, 394
BsmFI GGGAC 1 cut(s) 111
BsmI GAATGC 1 cut(s) 264
BspCNI CTCAG 2 cut(s) 28, 154
BspLI GGNNCC 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 387
BssAI RCCGGY 1 cut(s) 387
Bst2UI CCWGG 1 cut(s) 379
Bst4CI ACNGT 2 cut(s) 81, 363
Bst6I CTCTTC 1 cut(s) 152
BstDEI CTNAG 2 cut(s) 15, 162
BstF5I GGATG 2 cut(s) 79, 374
BstMAI GTCTC 3 cut(s) 18, 147, 394
BstNI CCWGG 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 377
BtsCI GGATG 2 cut(s) 79, 374
Cfr10I RCCGGY 1 cut(s) 387
CspAI ACCGGT 1 cut(s) 387
CspCI CAANNNNNGTGG 2 cut(s) 108, 143
CviJI RGCY 3 cut(s) 5, 47, 169
CviKI_1 RGCY 3 cut(s) 5, 47, 169
DdeI CTNAG 2 cut(s) 15, 162
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 377
FaiI YATR 4 cut(s) 241, 295, 336, 350
FaqI GGGAC 1 cut(s) 111
FokI GGATG 2 cut(s) 86, 361
HapII CCGG 1 cut(s) 388
HincII GTYRAC 3 cut(s) 37, 211, 366
HindII GTYRAC 3 cut(s) 37, 211, 366
HinfI GANTC 2 cut(s) 158, 190
HpaII CCGG 1 cut(s) 388
Hpy166II GTNNAC 3 cut(s) 37, 211, 366
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 4 cut(s) 59, 71, 155, 397
Hpy8I GTNNAC 3 cut(s) 37, 211, 366
HpyAV CCTTC 1 cut(s) 297
HpyCH4III ACNGT 2 cut(s) 81, 363
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 3 cut(s) 22, 262, 311
HpyF3I CTNAG 2 cut(s) 15, 162
HpySE526I ACGT 1 cut(s) 264
LpnPI CCDG 9 cut(s) 56, 80, 188, 194, 212, 364, 391, 401, 410
MaeII ACGT 1 cut(s) 264
MboII GAAGA 3 cut(s) 139, 259, 334
MluCI AATT 3 cut(s) 121, 326, 405
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 3 cut(s) 55, 58, 159
MseI TTAA 2 cut(s) 392, 408
MspI CCGG 1 cut(s) 388
MspR9I CCNGG 1 cut(s) 379
Mva1269I GAATGC 1 cut(s) 264
MvaI CCWGG 1 cut(s) 379
NlaIV GGNNCC 1 cut(s) 229
PctI GAATGC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 158
PinAI ACCGGT 1 cut(s) 387
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 377
PspGI CCWGG 1 cut(s) 377
PspN4I GGNNCC 1 cut(s) 229
SaqAI TTAA 2 cut(s) 392, 408
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 379
SetI ASST 4 cut(s) 183, 225, 267, 383
Sse9I AATT 3 cut(s) 121, 326, 405
StyD4I CCNGG 1 cut(s) 377
TaaI ACNGT 2 cut(s) 81, 363
TaiI ACGT 1 cut(s) 267
TasI AATT 3 cut(s) 121, 326, 405
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 2 cut(s) 392, 408
Tru9I TTAA 2 cut(s) 392, 408
TspDTI ATGAA 1 cut(s) 90
XapI RAATTY 2 cut(s) 121, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.