Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Reverse (-)

3454145 .. 3456085

Gene Structure 1941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G004030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCTGGTGTGTCTCAGTTGCAGAAGCAGTTTGTTGACTACAAAGCCTCACTCTTTCAAGAGGGGGTTCTGGATGAACAGTTTGACCAACTTCAGGGACTACAAGATGAGAGCAACCCAAATTTTGTGGTTGAAGTGGTGTCTCTCTTCTTTCAAGATTCTGAGAGGCTTCTCAATGACCTGACCAAGACACTAAACCAGCAGGGTGTTGACTTCAAAAAGGTCGGTGCCAATGTTCATCAGTTGAAGGGTAGCAGCTCCAGCATTGGTGCTCAGAGGGTTCAGAGAGTCTGCATTGCATTTCGTAACTACGGTGAGGAGCACAACATTGAAGGGTGCCTAAAATCTCTTCAGCTAGTGAAGCATGAATATACCATTGTGAAAAATAAACTTGAAACTCTTTTCAAGCTGGAGCAACAGATTTTGGCTGCCGGCGGCATTGTACCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

150

Amino Acids

16.89

Weight (kDa)

5.91

Isoelectric Point (pI)

39.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	45 - 127	1.3e-14	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	227, 336
AciI	CCGC	1 cut(s)	435
AcsI	RAATTY	1 cut(s)	121
AcuI	CTGAAG	2 cut(s)	77, 335
AfaI	GTAC	1 cut(s)	444
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	8 cut(s)	59, 134, 155, 217, 247, 332, 395, 406
AluBI	AGCT	3 cut(s)	258, 355, 409
AluI	AGCT	3 cut(s)	258, 355, 409
Alw21I	GWGCWC	2 cut(s)	274, 324
Alw26I	GTCTC	2 cut(s)	18, 147
ApeKI	GCWGC	2 cut(s)	255, 428
ApoI	RAATTY	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	326
BanI	GGYRCC	2 cut(s)	227, 336
Bbv12I	GWGCWC	2 cut(s)	274, 324
BbvI	GCAGC	2 cut(s)	267, 415
BcoDI	GTCTC	2 cut(s)	18, 147
BfaI	CTAG	1 cut(s)	356
BisI	GCNGC	3 cut(s)	256, 429, 436
BlsI	GCNGC	3 cut(s)	257, 430, 437
BmiI	GGNNCC	2 cut(s)	229, 338
BpmI	CTGGAG	2 cut(s)	244, 431
BsaJI	CCNNGG	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse118I	RCCGGY	1 cut(s)	431
Bse3DI	GCAATG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	3 cut(s)	29, 153, 287
BseRI	GAGGAG	1 cut(s)	332
BseXI	GCAGC	2 cut(s)	267, 415
BshNI	GGYRCC	2 cut(s)	227, 336
BsiHKAI	GWGCWC	2 cut(s)	274, 324
BsiSI	CCGG	1 cut(s)	432
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	2 cut(s)	18, 147
BsmFI	GGGAC	1 cut(s)	111
Bsp1286I	GDGCHC	2 cut(s)	274, 324
BspACI	CCGC	1 cut(s)	435
BspCNI	CTCAG	3 cut(s)	28, 154, 286
BspLI	GGNNCC	2 cut(s)	229, 338
BspT107I	GGYRCC	2 cut(s)	227, 336
BsrDI	GCAATG	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	431
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	1 cut(s)	446
BssT1I	CCWWGG	1 cut(s)	446
Bst4CI	ACNGT	2 cut(s)	81, 314
Bst6I	CTCTTC	2 cut(s)	152, 354
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	3 cut(s)	15, 162, 273
BstF5I	GGATG	1 cut(s)	79
BstMAI	GTCTC	2 cut(s)	18, 147
BstMWI	GCNNNNNNNGC	2 cut(s)	261, 361
BstV1I	GCAGC	2 cut(s)	267, 415
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	433
Cfr10I	RCCGGY	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	443
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	1 cut(s)	365
CviJI	RGCY	7 cut(s)	5, 47, 169, 258, 355, 409, 428
CviKI_1	RGCY	7 cut(s)	5, 47, 169, 258, 355, 409, 428
CviQI	GTAC	1 cut(s)	443
DdeI	CTNAG	3 cut(s)	15, 162, 273
Eam1104I	CTCTTC	2 cut(s)	152, 354
EarI	CTCTTC	2 cut(s)	152, 354
Eco130I	CCWWGG	1 cut(s)	446
Eco57I	CTGAAG	2 cut(s)	77, 335
EcoT14I	CCWWGG	1 cut(s)	446
ErhI	CCWWGG	1 cut(s)	446
FaeI	CATG	1 cut(s)	368
FaiI	YATR	2 cut(s)	366, 372
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	1 cut(s)	364
Fnu4HI	GCNGC	3 cut(s)	256, 429, 436
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	3 cut(s)	256, 429, 436
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	3 cut(s)	256, 429, 436
GsuI	CTGGAG	2 cut(s)	244, 431
HapII	CCGG	1 cut(s)	432
Hin1II	CATG	1 cut(s)	368
HincII	GTYRAC	2 cut(s)	37, 211
HindII	GTYRAC	2 cut(s)	37, 211
HinfI	GANTC	2 cut(s)	158, 288
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	37, 211
Hpy188I	TCNGA	3 cut(s)	163, 276, 285
Hpy188III	TCNNGA	3 cut(s)	59, 71, 155
Hpy8I	GTNNAC	2 cut(s)	37, 211
HpyAV	CCTTC	2 cut(s)	241, 326
HpyCH4III	ACNGT	2 cut(s)	81, 314
HpyCH4V	TGCA	3 cut(s)	22, 294, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	261, 361
HpyF3I	CTNAG	3 cut(s)	15, 162, 273
Hsp92II	CATG	1 cut(s)	368
KroI	GCCGGC	1 cut(s)	431
KroNI	GCCGGC	1 cut(s)	433
LmnI	GCTCC	3 cut(s)	263, 319, 412
LpnPI	CCDG	8 cut(s)	56, 80, 188, 194, 212, 274, 395, 445
Lsp1109I	GCAGC	2 cut(s)	267, 415
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	1 cut(s)	305
MboII	GAAGA	2 cut(s)	139, 341
MhlI	GDGCHC	2 cut(s)	274, 324
MluCI	AATT	1 cut(s)	121
MlyI	GAGTC	1 cut(s)	297
MnlI	CCTC	5 cut(s)	55, 58, 159, 270, 310
MroNI	GCCGGC	1 cut(s)	431
MspI	CCGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	2 cut(s)	261, 361
NaeI	GCCGGC	1 cut(s)	433
NgoMIV	GCCGGC	1 cut(s)	431
NlaIII	CATG	1 cut(s)	368
NlaIV	GGNNCC	2 cut(s)	229, 338
PdiI	GCCGGC	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	3 cut(s)	257, 430, 437
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PspN4I	GGNNCC	2 cut(s)	229, 338
RsaI	GTAC	1 cut(s)	444
RsaNI	GTAC	1 cut(s)	443
SatI	GCNGC	3 cut(s)	256, 429, 436
SchI	GAGTC	1 cut(s)	297
SduI	GDGCHC	2 cut(s)	274, 324
SetI	ASST	6 cut(s)	183, 225, 260, 357, 411, 452
Sse9I	AATT	1 cut(s)	121
SsiI	CCGC	1 cut(s)	435
SspMI	CTAG	1 cut(s)	356
StyI	CCWWGG	1 cut(s)	446
TaaI	ACNGT	2 cut(s)	81, 314
TasI	AATT	1 cut(s)	121
TauI	GCSGC	1 cut(s)	438
TfiI	GAWTC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	255, 428
TspDTI	ATGAA	3 cut(s)	90, 227, 381
XapI	RAATTY	1 cut(s)	121
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.