Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Forward (+)

29654492 .. 29656643

Gene Structure 2152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1212100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAATGTTGAAAAGCTTGGGAGTGATGCCATGGATGGCGTTTCTCAGTTGCAGAAGCAGTTGGTTGACTACACAGCTTCACTCTTTGATGAGGCATTTCTGGATGAACAGTTCAACCAACTTCAGCAACTGCAAGATGAGAACAACCCAGATTTTGTAGTTGAAGTGGTGTCTCTTTTCTTTCAAGATACTGAGAGGCTTGTTAATGAACTCGCAAAAGCTCTAGATCAGCAGTGTGTTGACTATAAGTTTGTGGATAAAAGTGTTCACCAATTGAAGGGTAGCAGCTCCAGCATTGGTGCTCAGAGAGTTCAGAGGGCCTGCATTTCATTCCGGAACTTCTGCGATGAGCAGAACGTCGAATGGTGCATAAAATGTCTGCAGCAGGTGAAGCATGAGTATTTACTTGTGAAAAATAAACTGGAAAATCTTTTCGAGCTGCAGAGACAGGTTGTGGCGGCTGGCGGTTCGCTTCCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

161

Amino Acids

18.34

Weight (kDa)

4.74

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	55 - 135	6.2e-15	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	376
Acc36I	ACCTGC	1 cut(s)	376
AccIII	TCCGGA	1 cut(s)	333
AciI	CCGC	2 cut(s)	458, 465
AcuI	CTGAAG	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	277
AgsI	TTSAA	5 cut(s)	11, 115, 164, 185, 277
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	5 cut(s)	16, 77, 221, 288, 439
AluI	AGCT	5 cut(s)	16, 77, 221, 288, 439
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	2 cut(s)	177, 439
AlwNI	CAGNNNCTG	1 cut(s)	130
Aor13HI	TCCGGA	1 cut(s)	333
AoxI	GGCC	1 cut(s)	318
ApeKI	GCWGC	3 cut(s)	285, 382, 439
ArsI	GACNNNNNNTTYG	2 cut(s)	233, 265
AspS9I	GGNCC	1 cut(s)	318
AsuHPI	GGTGA	2 cut(s)	260, 400
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	297, 394, 426
BccI	CCATC	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	177, 439
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	2 cut(s)	380, 440
BfuAI	ACCTGC	1 cut(s)	376
BisI	GCNGC	4 cut(s)	286, 383, 440, 459
BlsI	GCNGC	4 cut(s)	287, 384, 441, 460
BmgT120I	GGNCC	1 cut(s)	318
BmsI	GCATC	1 cut(s)	16
BpmI	CTGGAG	1 cut(s)	274
BsaJI	CCNNGG	2 cut(s)	30, 476
BsaWI	WCCGGW	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	426
BseAI	TCCGGA	1 cut(s)	333
BseDI	CCNNGG	2 cut(s)	30, 476
BseGI	GGATG	2 cut(s)	40, 109
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMII	CTCAG	3 cut(s)	59, 183, 317
BseNI	ACTGG	1 cut(s)	426
BseXI	GCAGC	3 cut(s)	297, 394, 426
BshFI	GGCC	1 cut(s)	320
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	2 cut(s)	177, 439
BsnI	GGCC	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp13I	TCCGGA	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	226
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	2 cut(s)	458, 465
BspANI	GGCC	1 cut(s)	320
BspCNI	CTCAG	3 cut(s)	58, 184, 316
BspEI	TCCGGA	1 cut(s)	333
BspMAI	CTGCAG	2 cut(s)	384, 444
BspMI	ACCTGC	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	2 cut(s)	30, 476
BssMI	GATC	1 cut(s)	226
BssT1I	CCWWGG	2 cut(s)	30, 476
Bst4CI	ACNGT	1 cut(s)	111
BstC8I	GCNNGC	2 cut(s)	322, 463
BstDEI	CTNAG	3 cut(s)	45, 192, 303
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	40, 109
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	2 cut(s)	177, 439
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	2 cut(s)	291, 391
BstSFI	CTRYAG	2 cut(s)	380, 440
BstV1I	GCAGC	3 cut(s)	297, 394, 426
BsuRI	GGCC	1 cut(s)	320
BtgI	CCRYGG	1 cut(s)	30
BtgZI	GCGATG	1 cut(s)	360
BtsCI	GGATG	2 cut(s)	40, 109
BtsI	GCAGTG	1 cut(s)	239
BtsIMutI	CAGTG	1 cut(s)	239
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	2 cut(s)	322, 463
CaiI	CAGNNNCTG	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	318
CviAII	CATG	2 cut(s)	31, 395
CviJI	RGCY	8 cut(s)	16, 77, 199, 221, 288, 320, 439, 461
CviKI_1	RGCY	8 cut(s)	16, 77, 199, 221, 288, 320, 439, 461
DdeI	CTNAG	3 cut(s)	45, 192, 303
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eco130I	CCWWGG	2 cut(s)	30, 476
Eco57I	CTGAAG	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	318
EcoT14I	CCWWGG	2 cut(s)	30, 476
ErhI	CCWWGG	2 cut(s)	30, 476
FaeI	CATG	2 cut(s)	34, 398
FaiI	YATR	4 cut(s)	32, 246, 371, 396
FatI	CATG	2 cut(s)	30, 394
Fnu4HI	GCNGC	4 cut(s)	286, 383, 440, 459
FokI	GGATG	2 cut(s)	47, 116
Fsp4HI	GCNGC	4 cut(s)	286, 383, 440, 459
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	4 cut(s)	286, 383, 440, 459
GsuI	CTGGAG	1 cut(s)	274
HaeIII	GGCC	1 cut(s)	320
HapII	CCGG	1 cut(s)	334
Hin1II	CATG	2 cut(s)	34, 398
HincII	GTYRAC	2 cut(s)	67, 241
HindII	GTYRAC	2 cut(s)	67, 241
HindIII	AAGCTT	1 cut(s)	14
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	2 cut(s)	260, 400
Hpy166II	GTNNAC	3 cut(s)	67, 241, 268
Hpy188I	TCNGA	2 cut(s)	306, 315
Hpy188III	TCNNGA	4 cut(s)	101, 185, 224, 334
Hpy8I	GTNNAC	3 cut(s)	67, 241, 268
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	111
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	6 cut(s)	52, 133, 324, 369, 382, 442
HpyF10VI	GCNNNNNNNGC	2 cut(s)	291, 391
HpyF3I	CTNAG	3 cut(s)	45, 192, 303
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	2 cut(s)	34, 398
Kpn2I	TCCGGA	1 cut(s)	333
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	293
LpnPI	CCDG	9 cut(s)	86, 162, 304, 334, 347, 371, 407, 434, 447
Lsp1109I	GCAGC	3 cut(s)	297, 394, 426
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	357
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MfeI	CAATTG	1 cut(s)	272
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	1 cut(s)	272
MnlI	CCTC	3 cut(s)	85, 189, 309
MroI	TCCGGA	1 cut(s)	333
MseI	TTAA	1 cut(s)	204
MspI	CCGG	1 cut(s)	334
MunI	CAATTG	1 cut(s)	272
MwoI	GCNNNNNNNGC	2 cut(s)	291, 391
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	2 cut(s)	34, 398
PaqCI	CACCTGC	1 cut(s)	376
PkrI	GCNGC	4 cut(s)	287, 384, 441, 460
PspPI	GGNCC	1 cut(s)	318
PstI	CTGCAG	2 cut(s)	384, 444
PstNI	CAGNNNCTG	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	4 cut(s)	286, 383, 440, 459
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	1 cut(s)	318
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	9 cut(s)	18, 79, 223, 290, 360, 390, 441, 453, 482
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	2 cut(s)	380, 440
Sse9I	AATT	1 cut(s)	272
SsiI	CCGC	2 cut(s)	458, 465
SspMI	CTAG	1 cut(s)	224
StyI	CCWWGG	2 cut(s)	30, 476
TaaI	ACNGT	1 cut(s)	111
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	2 cut(s)	360, 435
TasI	AATT	1 cut(s)	272
TauI	GCSGC	1 cut(s)	461
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	239
TseI	GCWGC	3 cut(s)	285, 382, 439
TspDTI	ATGAA	4 cut(s)	17, 120, 222, 318
TspRI	CASTG	1 cut(s)	239
XbaI	TCTAGA	1 cut(s)	223
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.