Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Reverse (-)

15212549 .. 15214510

Gene Structure 1962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1178100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAGGTGGGGCAAATGCAGAGACAGTGGGTTGACTACACAAAATCCCTGTTCCTGGAGAAGGGGTTTCTGGATGGTCAGTTTTTGCAGCTCCAACAGCTGCAGGATGAGAGCAACCCAGATTTTGTTGTTGAAGTGGTGTCCCTTTTCTTTGAAGATTCTGAGAAGCTTCTCAATGATCTCACCAGAGCTCTTGAACAACCAACTGTAGACTTCAAAAGGGTTGATGCCCATGTTCACCAGTTCAAGGGTAGTAGCTCCAGTATTGGTGCGCAAAGAGTTAAAAATGCCTGCATTGCTTTCCGCAATTTCTGCGAGGAACAGAACACTGAAGGGTGTGTTAGATGTGTTCAACAAGTAAAGCATGAGTACTACCTCGTGAAGAGCAAGCTTGAAACTCTCTTCGCGATGGAGCAACAAATTATGGCAGCTGGCGGGTCGATTCCTATGTTGGAATTGAATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

156

Amino Acids

17.84

Weight (kDa)

4.95

Isoelectric Point (pI)

29.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	45 - 127	1.8e-15	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	273
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	1 cut(s)	407
AciI	CCGC	2 cut(s)	304, 435
AcsI	RAATTY	1 cut(s)	460
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	3 cut(s)	55, 61, 247
AgsI	TTSAA	8 cut(s)	134, 155, 197, 217, 247, 353, 395, 460
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	7 cut(s)	91, 100, 169, 191, 258, 391, 431
AluI	AGCT	7 cut(s)	91, 100, 169, 191, 258, 391, 431
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	16
ApeKI	GCWGC	3 cut(s)	88, 100, 428
ApoI	RAATTY	1 cut(s)	460
AspLEI	GCGC	1 cut(s)	274
AsuHPI	GGTGA	2 cut(s)	175, 230
BanII	GRGCYC	1 cut(s)	193
BauI	CACGAG	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	3 cut(s)	87, 100, 440
BccI	CCATC	2 cut(s)	68, 403
BciT130I	CCWGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	16
BfmI	CTRYAG	2 cut(s)	101, 207
BisI	GCNGC	3 cut(s)	89, 101, 429
BlsI	GCNGC	3 cut(s)	90, 102, 430
BmcAI	AGTACT	1 cut(s)	371
Bme1390I	CCNGG	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	217
BpmI	CTGGAG	2 cut(s)	77, 244
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 61, 247
Bse1I	ACTGG	2 cut(s)	241, 261
Bse3DI	GCAATG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	56
BseGI	GGATG	2 cut(s)	79, 112
BseLI	CCNNNNNNNGG	3 cut(s)	55, 61, 247
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	241, 261
BseXI	GCAGC	3 cut(s)	87, 100, 440
Bsh1236I	CGCG	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	3 cut(s)	55, 61, 247
BsmAI	GTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	178
Bsp68I	TCGCGA	1 cut(s)	407
BspACI	CCGC	2 cut(s)	304, 435
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	407
BspMAI	CTGCAG	1 cut(s)	105
BspQI	GCTCTTC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	294
BsrI	ACTGG	2 cut(s)	241, 261
BssMI	GATC	1 cut(s)	178
BssSI	CACGAG	1 cut(s)	377
Bst2BI	CACGAG	1 cut(s)	377
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	2 cut(s)	27, 208
Bst6I	CTCTTC	2 cut(s)	377, 407
BstAPI	GCANNNNNTGC	1 cut(s)	312
BstC8I	GCNNGC	3 cut(s)	292, 389, 433
BstDEI	CTNAG	1 cut(s)	162
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	2 cut(s)	79, 112
BstFNI	CGCG	1 cut(s)	407
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 296, 312
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	2 cut(s)	101, 207
BstUI	CGCG	1 cut(s)	407
BstV1I	GCAGC	3 cut(s)	87, 100, 440
BtgZI	GCGATG	1 cut(s)	422
BtsCI	GGATG	2 cut(s)	79, 112
BtsIMutI	CAGTG	2 cut(s)	32, 327
BtuMI	TCGCGA	1 cut(s)	407
Cac8I	GCNNGC	3 cut(s)	292, 389, 433
CfoI	GCGC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	2 cut(s)	233, 365
CviJI	RGCY	7 cut(s)	91, 100, 169, 191, 258, 391, 431
CviKI_1	RGCY	7 cut(s)	91, 100, 169, 191, 258, 391, 431
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eam1104I	CTCTTC	2 cut(s)	377, 407
EarI	CTCTTC	2 cut(s)	377, 407
Ecl136II	GAGCTC	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	191
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	193
FaeI	CATG	2 cut(s)	236, 368
FaiI	YATR	4 cut(s)	234, 366, 425, 449
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	2 cut(s)	232, 364
FauI	CCCGC	1 cut(s)	428
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	3 cut(s)	89, 101, 429
FokI	GGATG	2 cut(s)	86, 119
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	3 cut(s)	89, 101, 429
FspI	TGCGCA	1 cut(s)	273
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	3 cut(s)	89, 101, 429
GsuI	CTGGAG	2 cut(s)	77, 244
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	2 cut(s)	236, 368
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	2 cut(s)	167, 389
HinfI	GANTC	2 cut(s)	158, 442
HphI	GGTGA	2 cut(s)	175, 230
Hpy166II	GTNNAC	3 cut(s)	34, 211, 238
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	4 cut(s)	71, 194, 379, 406
Hpy8I	GTNNAC	3 cut(s)	34, 211, 238
HpyAV	CCTTC	2 cut(s)	55, 326
HpyCH4III	ACNGT	2 cut(s)	27, 208
HpyCH4V	TGCA	4 cut(s)	19, 88, 103, 294
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 296, 312
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	236, 368
HspAI	GCGC	1 cut(s)	272
Kzo9I	GATC	1 cut(s)	178
LguI	GCTCTTC	1 cut(s)	377
LmnI	GCTCC	3 cut(s)	96, 263, 412
Lsp1109I	GCAGC	3 cut(s)	87, 100, 440
LweI	GCATC	1 cut(s)	217
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	3 cut(s)	167, 394, 394
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	4 cut(s)	307, 420, 455, 460
MmeI	TCCRAC	2 cut(s)	118, 432
MnlI	CCTC	2 cut(s)	310, 386
MseI	TTAA	1 cut(s)	282
MspA1I	CMGCKG	2 cut(s)	100, 431
MspR9I	CCNGG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	407
MwoI	GCNNNNNNNGC	3 cut(s)	97, 296, 312
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	2 cut(s)	236, 368
NruI	TCGCGA	1 cut(s)	407
NsbI	TGCGCA	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	377
PfeI	GAWTC	2 cut(s)	158, 442
PfoI	TCCNGGA	1 cut(s)	54
PkrI	GCNGC	3 cut(s)	90, 102, 430
Psp124BI	GAGCTC	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PstI	CTGCAG	1 cut(s)	105
PvuII	CAGCTG	2 cut(s)	100, 431
RruI	TCGCGA	1 cut(s)	407
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SacI	GAGCTC	1 cut(s)	193
SapI	GCTCTTC	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	3 cut(s)	89, 101, 429
Sau3AI	GATC	1 cut(s)	178
ScaI	AGTACT	1 cut(s)	371
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	9 cut(s)	9, 93, 102, 171, 193, 260, 378, 393, 433
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	2 cut(s)	101, 207
Sse9I	AATT	4 cut(s)	307, 420, 455, 460
SsiI	CCGC	2 cut(s)	304, 435
SstI	GAGCTC	1 cut(s)	193
StyD4I	CCNGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	27, 208
TaqI	TCGA	1 cut(s)	440
TasI	AATT	4 cut(s)	307, 420, 455, 460
TatI	WGTACW	1 cut(s)	369
TfiI	GAWTC	2 cut(s)	158, 442
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	2 cut(s)	32, 334
TseI	GCWGC	3 cut(s)	88, 100, 428
TspRI	CASTG	2 cut(s)	32, 334
XagI	CCTNNNNNAGG	1 cut(s)	59
XapI	RAATTY	1 cut(s)	460
XmiI	GTMKAC	1 cut(s)	210
ZrmI	AGTACT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.