Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Forward (+)

75835641 .. 75839681

Gene Structure 4041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0649400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1869 bp

ATGAAGTCGTCTTTTGACAAGCTTCGGAGATTCGAACTGTACAAGAGCGGTTCTAAAGATAAGAGGAACTTTCAACCCTCGGCTCACGTCGATGAGCTCGCTCAGGCTTCTCAGGACATGCAAGATATGAGAAATTGCTATGATAGCTTACTTTCTGCAGCTGCTGCTACAGCCAACAGCGCCTATGAATTCTCCGAATCACTGCGGGAAATGGGTTCTTGTCTGCAAGAGAAAACTGCATTACATCATGATGAACGAGGCGGTAGAGTTTTTCTGATGTTGGGGAAAGTGCAGTTTGAACTTCAAAAACTTGTTGATTCCTATCGATCTCATATAGTTTCGACAGTCACAAACCCATCAGAGTCTCTTCTCAATGAACTTCGAACAGTTGAGGAAATGAAGCGACAATGTGATGAAAAACGAGAGGTATATGAATACATGGTAGCACAACAGAAAGAAAAAGGGAGATCAAAACGTGGGAAGGGCGAAAGCTTTACTTTGCAGCAACTGCAAGTAGCTCGTGAGGAATATGATGAGGAAGCTACACTGTGTGTTTTCCGGTTGAAGTCCCTGAAGCAAGGGCAAGCCCGAAGTCTTCTAACACAAGCAGCTCGCCACCATGCCGCTCAGTTGAACTTCTTCCGGAAAGGACTGAAGTCACTTGAGGCTGTCGAGCCACATGTTAGGTTGGTTACAGAGGAGCAACATATTGAATACCAATTTAGTGGACTTGAAGACGATGGTGAGGATGATGGTGCAGATCATGGTGAGAATAGCAACGATTCTATTGAAGATGGAGAATTGAGTTTTGACTATAGACCAAGTAAGCAGGGAATGGAAGTCTCTGCATCAAGGAATTCAATGGAGGTTGATGAAGTGGGCCATTTGTCTCCTCAAGCTTCAACATTGGAATATCCAGATATAAATCTTGATCAAGGTGAACTCAAGTTTCCGAGTAGAGAACCAAGAATAGGCGGTAGCTACTCAGCCCCAATAGTTTCTGCAGATCCGAAGTTTGATCCCGCTGAGAGAGCTAGACAATTGCAACTGTCAGCTACACGGAGGCCTAATGCATATGTGCTGCCTACACCTGATTCAAAGGGTTTAGTTTCTTCAAGGACAAGTAGTACGGTTCCAGGCGTGAGGTCTGGTGGACGCATCCATAACTTATCGTACTCTTCCCCATTAGACGCGAAGCACGATAAGTATTCTGGTGATGATAATGTGTCAGGAGCTAATTTCTCAAAAGCACAGTCGGTAGTCAAAGAGAGCCATAGTACTAATACATCGATGCAACTGCCTCCTCCTCCTCTGGCAGACGGACTGGCACAACATCAGCATAAAAGACAAGCTTTCTCTGGCCCACTAACTAGTAAGCCATCATCAACTAAGCCTGCGTTCTCTGCTAGTGGTCCCATTGTATCTAGTGAACCACCTCAACTAGTTTCTGGTATGCTTCCTCGTTTACCAAATCCTCAGCCTTCTTCATCTCCAAAAGTATCCCCAAGTGCTTCACCTCCCCTTGCTTCTTCACCCAAGATAAGTGAGCTTCACGAGCTTCCTAGACCCCCAGGTAGTTCAGTTGTCAAGCCAACAAAATCTTCTGGATTGGTTGGCCACTCTGCTCCACTGTTCTCCAGAAATCAAGAACCTCACGTTCATAATAAAATCCCTTCAGTGCCAACAAATCTGGCATCTCCACTTCCAATTCCACCATTGATTATTCCTAGAAGTTTCTCCATACCTTCGAGTAACCAAAGAGCAGTGACATTGCATGTATCTAGGCATTTGGAGTCTCCTCTAGGTTCAAGCAATCCGGAAGAAGTTGCTTCACCTCCATTGACGCCAATTTCCCTAACAAACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

622

Amino Acids

68.19

Weight (kDa)

6.62

Isoelectric Point (pI)

57.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAR_3	PF16746	29 - 231	8.6e-06	BAR domain of APPL family
BAR	PF03114	42 - 227	4.8e-08	BAR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	48, 626
AccII	CGCG	1 cut(s)	1193
AccIII	TCCGGA	2 cut(s)	642, 1816
AciI	CCGC	6 cut(s)	48, 205, 261, 624, 975, 1023
AclWI	GGATC	2 cut(s)	1001, 1013
AcoI	YGGCCR	1 cut(s)	1615
AcsI	RAATTY	2 cut(s)	188, 856
AcuI	CTGAAG	3 cut(s)	593, 674, 1659
AcyI	GRCGYC	1 cut(s)	1844
AdeI	CACNNNGTG	1 cut(s)	551
AfaI	GTAC	4 cut(s)	41, 1129, 1175, 1279
AfiI	CCNNNNNNNGG	1 cut(s)	971
AflIII	ACRYGT	2 cut(s)	679, 1863
AhlI	ACTAGT	2 cut(s)	1370, 1441
AjiI	CACGTC	1 cut(s)	88
AjnI	CCWGG	2 cut(s)	1135, 1570
AjuI	GAANNNNNNNTTGG	2 cut(s)	1585, 1617
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	4 cut(s)	369, 847, 894, 1800
AlwI	GGATC	2 cut(s)	1001, 1013
AlwNI	CAGNNNCTG	2 cut(s)	164, 508
Aor13HI	TCCGGA	2 cut(s)	642, 1816
AoxI	GGCC	4 cut(s)	880, 1064, 1360, 1615
ApeKI	GCWGC	6 cut(s)	158, 161, 164, 502, 608, 1081
ApoI	RAATTY	2 cut(s)	188, 856
ArsI	GACNNNNNNTTYG	2 cut(s)	1238, 1270
Asp700I	GAANNNNTTC	1 cut(s)	638
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	3 cut(s)	880, 1361, 1412
AsuHPI	GGTGA	7 cut(s)	755, 779, 950, 1226, 1506, 1524, 1824
AsuII	TTCGAA	2 cut(s)	33, 382
AvaII	GGWCC	1 cut(s)	1412
BalI	TGGCCA	1 cut(s)	1617
BanII	GRGCYC	1 cut(s)	99
BauI	CACGAG	2 cut(s)	519, 1553
BbsI	GAAGAC	2 cut(s)	587, 741
Bbv12I	GWGCWC	1 cut(s)	99
BbvCI	CCTCAGC	1 cut(s)	1476
BbvI	GCAGC	6 cut(s)	148, 151, 170, 514, 620, 1068
BccI	CCATC	5 cut(s)	364, 734, 746, 788, 1387
BcgI	CGANNNNNNTGC	4 cut(s)	500, 534, 1279, 1313
BciT130I	CCWGG	2 cut(s)	1137, 1572
BciVI	GTATCC	1 cut(s)	1510
BclI	TGATCA	1 cut(s)	931
BcoDI	GTCTC	4 cut(s)	369, 847, 894, 1800
BcuI	ACTAGT	2 cut(s)	1370, 1441
BfaI	CTAG	9 cut(s)	1035, 1371, 1407, 1425, 1442, 1563, 1728, 1782, 1802
BfmI	CTRYAG	4 cut(s)	156, 168, 814, 1002
BfoI	RGCGCY	1 cut(s)	183
BfuI	GTATCC	1 cut(s)	1510
BisI	GCNGC	7 cut(s)	159, 162, 165, 503, 609, 624, 1082
BlsI	GCNGC	7 cut(s)	160, 163, 166, 504, 610, 625, 1083
BmcAI	AGTACT	1 cut(s)	1279
Bme1390I	CCNGG	2 cut(s)	1137, 1572
Bme18I	GGWCC	1 cut(s)	1412
BmgBI	CACGTC	1 cut(s)	88
BmgT120I	GGNCC	3 cut(s)	880, 1361, 1412
BmiI	GGNNCC	2 cut(s)	1134, 1414
BmrFI	CCNGG	2 cut(s)	1137, 1572
BmsI	GCATC	4 cut(s)	857, 1167, 1281, 1703
BoxI	GACNNNNGTC	1 cut(s)	655
BpiI	GAAGAC	2 cut(s)	587, 741
BpmI	CTGGAG	1 cut(s)	1621
Bpu10I	CCTNAGC	2 cut(s)	102, 1476
Bpu14I	TTCGAA	2 cut(s)	33, 382
BpuEI	CTTGAG	3 cut(s)	683, 879, 929
Bsa29I	ATCGAT	2 cut(s)	325, 1289
BsaBI	GATNNNNATC	2 cut(s)	321, 924
BsaHI	GRCGYC	1 cut(s)	1844
BsaJI	CCNNGG	2 cut(s)	78, 1570
BsaWI	WCCGGW	3 cut(s)	558, 642, 1816
Bsc4I	CCNNNNNNNGG	1 cut(s)	971
Bse1I	ACTGG	1 cut(s)	1329
Bse3DI	GCAATG	1 cut(s)	1769
Bse8I	GATNNNNATC	2 cut(s)	321, 924
BseAI	TCCGGA	2 cut(s)	642, 1816
BseBI	CCWGG	2 cut(s)	1137, 1572
BseCI	ATCGAT	2 cut(s)	325, 1289
BseDI	CCNNGG	2 cut(s)	78, 1570
BseGI	GGATG	2 cut(s)	754, 1158
BseJI	GATNNNNATC	2 cut(s)	321, 924
BseLI	CCNNNNNNNGG	1 cut(s)	971
BseMI	GCAATG	1 cut(s)	1769
BseMII	CTCAG	6 cut(s)	116, 125, 641, 999, 1017, 1490
BseNI	ACTGG	1 cut(s)	1329
BseRI	GAGGAG	6 cut(s)	713, 882, 1293, 1296, 1299, 1788
BseXI	GCAGC	6 cut(s)	148, 151, 170, 514, 620, 1068
BsgI	GTGCAG	2 cut(s)	311, 777
Bsh1236I	CGCG	1 cut(s)	1193
BshFI	GGCC	4 cut(s)	882, 1066, 1362, 1617
BshVI	ATCGAT	2 cut(s)	325, 1289
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	3 cut(s)	559, 643, 1817
BslFI	GGGAC	2 cut(s)	553, 1398
BslI	CCNNNNNNNGG	1 cut(s)	971
BsmAI	GTCTC	4 cut(s)	369, 847, 894, 1800
BsmFI	GGGAC	2 cut(s)	553, 1398
BsnI	GGCC	4 cut(s)	882, 1066, 1362, 1617
Bsp119I	TTCGAA	2 cut(s)	33, 382
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp13I	TCCGGA	2 cut(s)	642, 1816
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	6 cut(s)	326, 467, 760, 931, 1006, 1018
BspACI	CCGC	6 cut(s)	48, 205, 261, 624, 975, 1023
BspANI	GGCC	4 cut(s)	882, 1066, 1362, 1617
BspCNI	CTCAG	6 cut(s)	115, 124, 640, 998, 1018, 1489
BspDI	ATCGAT	2 cut(s)	325, 1289
BspEI	TCCGGA	2 cut(s)	642, 1816
BspFNI	CGCG	1 cut(s)	1193
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	1134, 1414
BspMAI	CTGCAG	2 cut(s)	160, 1006
BspPI	GGATC	2 cut(s)	1001, 1013
BspT104I	TTCGAA	2 cut(s)	33, 382
BsrBI	CCGCTC	2 cut(s)	48, 626
BsrDI	GCAATG	1 cut(s)	1769
BsrGI	TGTACA	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	1329
BssECI	CCNNGG	2 cut(s)	78, 1570
BssMI	GATC	6 cut(s)	326, 467, 760, 931, 1006, 1018
BssNI	GRCGYC	1 cut(s)	1844
BssSI	CACGAG	2 cut(s)	519, 1553
Bst2BI	CACGAG	2 cut(s)	519, 1553
Bst2UI	CCWGG	2 cut(s)	1137, 1572
Bst4CI	ACNGT	8 cut(s)	39, 346, 388, 549, 1050, 1132, 1254, 1632
Bst6I	CTCTTC	2 cut(s)	372, 1183
BstACI	GRCGYC	1 cut(s)	1844
BstAPI	GCANNNNNTGC	2 cut(s)	164, 508
BstAUI	TGTACA	1 cut(s)	39
BstBI	TTCGAA	2 cut(s)	33, 382
BstC8I	GCNNGC	4 cut(s)	99, 585, 613, 1395
BstDEI	CTNAG	7 cut(s)	102, 111, 627, 985, 1026, 1389, 1476
BstF5I	GGATG	2 cut(s)	754, 1158
BstFNI	CGCG	1 cut(s)	1193
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	6 cut(s)	329, 470, 763, 934, 1009, 1021
BstMAI	GTCTC	4 cut(s)	369, 847, 894, 1800
BstMBI	GATC	6 cut(s)	326, 467, 760, 931, 1006, 1018
BstMWI	GCNNNNNNNGC	8 cut(s)	144, 164, 170, 179, 508, 1031, 1403, 1555
BstNI	CCWGG	2 cut(s)	1137, 1572
BstNSI	RCATGY	4 cut(s)	121, 683, 1778, 1867
BstPAI	GACNNNNGTC	1 cut(s)	655
BstSCI	CCNGG	2 cut(s)	1135, 1570
BstSFI	CTRYAG	4 cut(s)	156, 168, 814, 1002
BstUI	CGCG	1 cut(s)	1193
BstV1I	GCAGC	6 cut(s)	148, 151, 170, 514, 620, 1068
BstV2I	GAAGAC	2 cut(s)	587, 741
BstX2I	RGATCY	1 cut(s)	1006
BstXI	CCANNNNNNTGG	1 cut(s)	725
BstYI	RGATCY	1 cut(s)	1006
Bsu15I	ATCGAT	2 cut(s)	325, 1289
BsuI	GTATCC	1 cut(s)	1510
BsuRI	GGCC	4 cut(s)	882, 1066, 1362, 1617
BsuTUI	ATCGAT	2 cut(s)	325, 1289
BtrI	CACGTC	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	754, 1158
BtsI	GCAGTG	2 cut(s)	200, 1770
BtsIMutI	CAGTG	5 cut(s)	200, 545, 1628, 1683, 1770
Cac8I	GCNNGC	4 cut(s)	99, 585, 613, 1395
CaiI	CAGNNNCTG	2 cut(s)	164, 508
CciI	TCATGA	1 cut(s)	247
CfoI	GCGC	1 cut(s)	182
Cfr13I	GGNCC	3 cut(s)	880, 1361, 1412
ClaI	ATCGAT	2 cut(s)	325, 1289
CseI	GACGC	3 cut(s)	1164, 1199, 1852
Csp6I	GTAC	4 cut(s)	40, 1128, 1174, 1278
CviAII	CATG	8 cut(s)	118, 248, 439, 620, 680, 764, 1775, 1864
CviQI	GTAC	4 cut(s)	40, 1128, 1174, 1278
DdeI	CTNAG	7 cut(s)	102, 111, 627, 985, 1026, 1389, 1476
DpnI	GATC	6 cut(s)	328, 469, 762, 933, 1008, 1020
DpnII	GATC	6 cut(s)	326, 467, 760, 931, 1006, 1018
DraIII	CACNNNGTG	1 cut(s)	551
EaeI	YGGCCR	1 cut(s)	1615
Eam1104I	CTCTTC	2 cut(s)	372, 1183
EarI	CTCTTC	2 cut(s)	372, 1183
Ecl136II	GAGCTC	1 cut(s)	97
Eco147I	AGGCCT	1 cut(s)	1066
Eco24I	GRGCYC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	1412
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	3 cut(s)	593, 674, 1659
EcoICRI	GAGCTC	1 cut(s)	97
EcoRI	GAATTC	2 cut(s)	188, 856
EcoRII	CCWGG	2 cut(s)	1135, 1570
EcoT22I	ATGCAT	1 cut(s)	1075
EcoT38I	GRGCYC	1 cut(s)	99
FaeI	CATG	8 cut(s)	121, 251, 442, 623, 683, 767, 1778, 1867
FalI	AAGNNNNNCTT	6 cut(s)	53, 85, 481, 513, 1336, 1368
FaqI	GGGAC	2 cut(s)	553, 1398
FatI	CATG	8 cut(s)	117, 247, 438, 619, 679, 763, 1774, 1863
FauI	CCCGC	2 cut(s)	198, 1030
FauNDI	CATATG	1 cut(s)	1075
FbaI	TGATCA	1 cut(s)	931
Fnu4HI	GCNGC	7 cut(s)	159, 162, 165, 503, 609, 624, 1082
FokI	GGATG	2 cut(s)	761, 1145
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	7 cut(s)	159, 162, 165, 503, 609, 624, 1082
FspBI	CTAG	9 cut(s)	1035, 1371, 1407, 1425, 1442, 1563, 1728, 1782, 1802
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	7 cut(s)	159, 162, 165, 503, 609, 624, 1082
GsuI	CTGGAG	1 cut(s)	1621
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	4 cut(s)	882, 1066, 1362, 1617
HapII	CCGG	3 cut(s)	559, 643, 1817
HgaI	GACGC	3 cut(s)	1164, 1199, 1852
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	1844
Hin1II	CATG	8 cut(s)	121, 251, 442, 623, 683, 767, 1778, 1867
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HindIII	AAGCTT	4 cut(s)	20, 490, 897, 1350
HinfI	GANTC	7 cut(s)	30, 197, 317, 362, 782, 1094, 1793
HpaII	CCGG	3 cut(s)	559, 643, 1817
HphI	GGTGA	7 cut(s)	755, 779, 950, 1226, 1506, 1524, 1824
Hpy166II	GTNNAC	5 cut(s)	728, 941, 1154, 1430, 1466
Hpy188I	TCNGA	6 cut(s)	27, 196, 276, 361, 954, 1011
Hpy8I	GTNNAC	5 cut(s)	728, 941, 1154, 1430, 1466
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	4 cut(s)	475, 1491, 1683, 1755
HpyCH4III	ACNGT	8 cut(s)	39, 346, 388, 549, 1050, 1132, 1254, 1632
HpyCH4IV	ACGT	3 cut(s)	87, 475, 1656
HpyF10VI	GCNNNNNNNGC	8 cut(s)	144, 164, 170, 179, 508, 1031, 1403, 1555
HpyF3I	CTNAG	7 cut(s)	102, 111, 627, 985, 1026, 1389, 1476
HpySE526I	ACGT	3 cut(s)	87, 475, 1656
Hsp92I	GRCGYC	1 cut(s)	1844
Hsp92II	CATG	8 cut(s)	121, 251, 442, 623, 683, 767, 1778, 1867
HspAI	GCGC	1 cut(s)	180
Kpn2I	TCCGGA	2 cut(s)	642, 1816
Ksp22I	TGATCA	1 cut(s)	931
Kzo9I	GATC	6 cut(s)	326, 467, 760, 931, 1006, 1018
LmnI	GCTCC	3 cut(s)	700, 1232, 1630
Lsp1109I	GCAGC	6 cut(s)	148, 151, 170, 514, 620, 1068
LweI	GCATC	4 cut(s)	857, 1167, 1281, 1703
MaeI	CTAG	9 cut(s)	1035, 1371, 1407, 1425, 1442, 1563, 1728, 1782, 1802
MaeII	ACGT	3 cut(s)	87, 475, 1656
MaeIII	GTNAC	5 cut(s)	346, 657, 691, 1751, 1765
MalI	GATC	6 cut(s)	328, 469, 762, 933, 1008, 1020
MbiI	CCGCTC	2 cut(s)	48, 626
MboI	GATC	6 cut(s)	326, 467, 760, 931, 1006, 1018
MfeI	CAATTG	1 cut(s)	1040
MflI	RGATCY	1 cut(s)	1006
MhlI	GDGCHC	1 cut(s)	99
MlsI	TGGCCA	1 cut(s)	1617
MluCI	AATT	9 cut(s)	133, 188, 719, 800, 856, 1040, 1237, 1707, 1848
MluNI	TGGCCA	1 cut(s)	1617
MlyI	GAGTC	2 cut(s)	371, 1802
Mox20I	TGGCCA	1 cut(s)	1617
Mph1103I	ATGCAT	1 cut(s)	1075
MroI	TCCGGA	2 cut(s)	642, 1816
MroXI	GAANNNNTTC	1 cut(s)	638
MscI	TGGCCA	1 cut(s)	1617
MslI	CAYNNNNRTG	2 cut(s)	90, 249
Msp20I	TGGCCA	1 cut(s)	1617
MspA1I	CMGCKG	2 cut(s)	161, 1025
MspI	CCGG	3 cut(s)	559, 643, 1817
MspR9I	CCNGG	2 cut(s)	1137, 1572
MunI	CAATTG	1 cut(s)	1040
MvaI	CCWGG	2 cut(s)	1137, 1572
MvnI	CGCG	1 cut(s)	1193
MwoI	GCNNNNNNNGC	8 cut(s)	144, 164, 170, 179, 508, 1031, 1403, 1555
NdeI	CATATG	1 cut(s)	1075
NdeII	GATC	6 cut(s)	326, 467, 760, 931, 1006, 1018
NlaIII	CATG	8 cut(s)	121, 251, 442, 623, 683, 767, 1778, 1867
NlaIV	GGNNCC	2 cut(s)	1134, 1414
NmeAIII	GCCGAG	1 cut(s)	59
NmuCI	GTSAC	3 cut(s)	346, 657, 1765
NsiI	ATGCAT	1 cut(s)	1075
NspI	RCATGY	4 cut(s)	121, 683, 1778, 1867
NspV	TTCGAA	2 cut(s)	33, 382
PagI	TCATGA	1 cut(s)	247
PceI	AGGCCT	1 cut(s)	1066
PciI	ACATGT	2 cut(s)	679, 1863
PcsI	WCGNNNNNNNCGW	1 cut(s)	1197
PdmI	GAANNNNTTC	1 cut(s)	638
PfeI	GAWTC	5 cut(s)	30, 197, 317, 782, 1094
PkrI	GCNGC	7 cut(s)	160, 163, 166, 504, 610, 625, 1083
PleI	GAGTC	2 cut(s)	370, 1801
PpsI	GAGTC	2 cut(s)	370, 1801
PscI	ACATGT	2 cut(s)	679, 1863
PshAI	GACNNNNGTC	1 cut(s)	655
Psp124BI	GAGCTC	1 cut(s)	99
Psp6I	CCWGG	2 cut(s)	1135, 1570
PspGI	CCWGG	2 cut(s)	1135, 1570
PspN4I	GGNNCC	2 cut(s)	1134, 1414
PspPI	GGNCC	3 cut(s)	880, 1361, 1412
PstI	CTGCAG	2 cut(s)	160, 1006
PstNI	CAGNNNCTG	2 cut(s)	164, 508
PsuI	RGATCY	1 cut(s)	1006
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	4 cut(s)	41, 1129, 1175, 1279
RsaNI	GTAC	4 cut(s)	40, 1128, 1174, 1278
RseI	CAYNNNNRTG	2 cut(s)	90, 249
SacI	GAGCTC	1 cut(s)	99
SatI	GCNGC	7 cut(s)	159, 162, 165, 503, 609, 624, 1082
Sau3AI	GATC	6 cut(s)	326, 467, 760, 931, 1006, 1018
Sau96I	GGNCC	3 cut(s)	880, 1361, 1412
ScaI	AGTACT	1 cut(s)	1279
SchI	GAGTC	2 cut(s)	371, 1802
ScrFI	CCNGG	2 cut(s)	1137, 1572
SduI	GDGCHC	1 cut(s)	99
SfaNI	GCATC	4 cut(s)	857, 1167, 1281, 1703
SfcI	CTRYAG	4 cut(s)	156, 168, 814, 1002
SfuI	TTCGAA	2 cut(s)	33, 382
SinI	GGWCC	1 cut(s)	1412
SmiMI	CAYNNNNRTG	2 cut(s)	90, 249
SmlI	CTYRAG	3 cut(s)	662, 894, 944
SmoI	CTYRAG	3 cut(s)	662, 894, 944
SpeI	ACTAGT	2 cut(s)	1370, 1441
Sse9I	AATT	9 cut(s)	133, 188, 719, 800, 856, 1040, 1237, 1707, 1848
SseBI	AGGCCT	1 cut(s)	1066
SsiI	CCGC	6 cut(s)	48, 205, 261, 624, 975, 1023
SspMI	CTAG	9 cut(s)	1035, 1371, 1407, 1425, 1442, 1563, 1728, 1782, 1802
SstI	GAGCTC	1 cut(s)	99
StuI	AGGCCT	1 cut(s)	1066
StyD4I	CCNGG	2 cut(s)	1135, 1570
TaaI	ACNGT	8 cut(s)	39, 346, 388, 549, 1050, 1132, 1254, 1632
TaiI	ACGT	3 cut(s)	90, 478, 1659
TaqI	TCGA	8 cut(s)	33, 90, 325, 341, 382, 672, 1289, 1748
TasI	AATT	9 cut(s)	133, 188, 719, 800, 856, 1040, 1237, 1707, 1848
TatI	WGTACW	2 cut(s)	39, 1277
TauI	GCSGC	1 cut(s)	626
TfiI	GAWTC	5 cut(s)	30, 197, 317, 782, 1094
TscAI	CASTG	5 cut(s)	207, 552, 1635, 1683, 1770
TseFI	GTSAC	3 cut(s)	346, 657, 1765
TseI	GCWGC	6 cut(s)	158, 161, 164, 502, 608, 1081
Tsp45I	GTSAC	3 cut(s)	346, 657, 1765
TspGWI	ACGGA	2 cut(s)	1075, 1335
TspRI	CASTG	5 cut(s)	207, 552, 1635, 1683, 1770
VpaK11BI	GGWCC	1 cut(s)	1412
XapI	RAATTY	2 cut(s)	188, 856
XceI	RCATGY	4 cut(s)	121, 683, 1778, 1867
XmnI	GAANNNNTTC	1 cut(s)	638
XspI	CTAG	9 cut(s)	1035, 1371, 1407, 1425, 1442, 1563, 1728, 1782, 1802
ZrmI	AGTACT	1 cut(s)	1279
Zsp2I	ATGCAT	1 cut(s)	1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.