Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Forward (+)

61588163 .. 61590047

Gene Structure 1885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020144

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGTGAGGCCGGCGGTTCACCGCCGAAGCAAACTTGTAGAGGAAGAAGAGTCTGATGACTGTGGTCAGTCTCGGCCACGACGGGGGCGTCTCAGGGTGGACGAAAGTCTTGATGATTCTCGGTGTTGGATTAGAGTTTTGCGAGATCTAAATTCGGTCGTGGATCCTGGTCGGAGACGAGATGGCCTGCATTTTGTATGTGCGGCGAAGGTGGGGGCCGTAACAGTGATCGGAGCAGGAGTAGGTGGGTTGAGGAATCTCTACTGTTTCGGGGTGGAGGTCGAAGAAATTAACCATCTGGGCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

103

Amino Acids

11.4

Weight (kDa)

7.72

Isoelectric Point (pI)

69.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	87
AciI	CCGC	3 cut(s)	14, 22, 203
AclWI	GGATC	2 cut(s)	158, 171
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	151
AcyI	GRCGYC	1 cut(s)	88
AfiI	CCNNNNNNNGG	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	166
Alw26I	GTCTC	3 cut(s)	75, 95, 169
AlwI	GGATC	2 cut(s)	158, 171
AoxI	GGCC	4 cut(s)	8, 74, 184, 216
ApoI	RAATTY	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	216
AsuHPI	GGTGA	2 cut(s)	11, 16
BamHI	GGATCC	1 cut(s)	163
BccI	CCATC	2 cut(s)	176, 303
BceAI	ACGGC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	168
BcoDI	GTCTC	3 cut(s)	75, 95, 169
BglII	AGATCT	1 cut(s)	145
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
Bme1390I	CCNGG	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	216
BmiI	GGNNCC	2 cut(s)	165, 217
BmrFI	CCNGG	1 cut(s)	168
BoxI	GACNNNNGTC	2 cut(s)	63, 105
BsaHI	GRCGYC	1 cut(s)	88
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse118I	RCCGGY	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	106
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	4 cut(s)	10, 76, 186, 218
BsiEI	CGRYCG	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	3 cut(s)	75, 95, 169
BsmBI	CGTCTC	2 cut(s)	95, 169
BsnI	GGCC	4 cut(s)	10, 76, 186, 218
Bsp143I	GATC	3 cut(s)	145, 163, 228
BspACI	CCGC	3 cut(s)	14, 22, 203
BspANI	GGCC	4 cut(s)	10, 76, 186, 218
BspCNI	CTCAG	1 cut(s)	105
BspLI	GGNNCC	2 cut(s)	165, 217
BspPI	GGATC	2 cut(s)	158, 171
BsrFI	RCCGGY	1 cut(s)	10
BssAI	RCCGGY	1 cut(s)	10
BssMI	GATC	3 cut(s)	145, 163, 228
BssNI	GRCGYC	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	3 cut(s)	62, 226, 266
Bst6I	CTCTTC	1 cut(s)	42
BstACI	GRCGYC	1 cut(s)	88
BstC8I	GCNNGC	2 cut(s)	12, 188
BstDEI	CTNAG	1 cut(s)	92
BstKTI	GATC	3 cut(s)	148, 166, 231
BstMAI	GTCTC	3 cut(s)	75, 95, 169
BstMBI	GATC	3 cut(s)	145, 163, 228
BstMCI	CGRYCG	1 cut(s)	159
BstNI	CCWGG	1 cut(s)	168
BstPAI	GACNNNNGTC	2 cut(s)	63, 105
BstSCI	CCNGG	1 cut(s)	166
BstX2I	RGATCY	2 cut(s)	145, 163
BstYI	RGATCY	2 cut(s)	145, 163
BsuRI	GGCC	4 cut(s)	10, 76, 186, 218
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	12, 188
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	216
CseI	GACGC	1 cut(s)	77
CviJI	RGCY	5 cut(s)	10, 76, 186, 218, 303
CviKI_1	RGCY	5 cut(s)	10, 76, 186, 218, 303
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	3 cut(s)	147, 165, 230
DpnII	GATC	3 cut(s)	145, 163, 228
DrdI	GACNNNNNNGTC	1 cut(s)	87
DseDI	GACNNNNNNGTC	1 cut(s)	87
EaeI	YGGCCR	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	166
Esp3I	CGTCTC	2 cut(s)	95, 169
FaiI	YATR	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	204
GluI	GCNGC	1 cut(s)	204
HaeIII	GGCC	4 cut(s)	10, 76, 186, 218
HapII	CCGG	1 cut(s)	11
HgaI	GACGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	88
HinfI	GANTC	3 cut(s)	50, 116, 256
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	2 cut(s)	11, 16
Hpy166II	GTNNAC	2 cut(s)	19, 100
Hpy188I	TCNGA	3 cut(s)	55, 174, 233
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	2 cut(s)	19, 100
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	3 cut(s)	62, 226, 266
HpyCH4V	TGCA	1 cut(s)	190
HpyF3I	CTNAG	1 cut(s)	92
Hsp92I	GRCGYC	1 cut(s)	88
KroI	GCCGGC	1 cut(s)	10
KroNI	GCCGGC	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	145, 163, 228
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	7 cut(s)	24, 79, 153, 180, 200, 222, 284
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	3 cut(s)	147, 165, 230
MboI	GATC	3 cut(s)	145, 163, 228
MboII	GAAGA	3 cut(s)	56, 59, 296
MflI	RGATCY	2 cut(s)	145, 163
MluCI	AATT	2 cut(s)	151, 288
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	2 cut(s)	107, 152
MnlI	CCTC	3 cut(s)	34, 246, 271
MroNI	GCCGGC	1 cut(s)	10
MseI	TTAA	1 cut(s)	291
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	168
NaeI	GCCGGC	1 cut(s)	12
NdeII	GATC	3 cut(s)	145, 163, 228
NgoMIV	GCCGGC	1 cut(s)	10
NlaIV	GGNNCC	2 cut(s)	165, 217
NmeAIII	GCCGAG	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	1 cut(s)	85
PdiI	GCCGGC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	116, 256
PkrI	GCNGC	1 cut(s)	205
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PshAI	GACNNNNGTC	2 cut(s)	63, 105
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	2 cut(s)	165, 217
PspPI	GGNCC	1 cut(s)	216
PsuI	RGATCY	2 cut(s)	145, 163
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	3 cut(s)	145, 163, 228
Sau96I	GGNCC	1 cut(s)	216
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	168
SetI	ASST	3 cut(s)	213, 247, 282
Sse9I	AATT	2 cut(s)	151, 288
SsiI	CCGC	3 cut(s)	14, 22, 203
StyD4I	CCNGG	1 cut(s)	166
TaaI	ACNGT	3 cut(s)	62, 226, 266
TaqI	TCGA	1 cut(s)	282
TaqII	GACCGA	1 cut(s)	145
TasI	AATT	2 cut(s)	151, 288
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	2 cut(s)	116, 256
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	231
TspRI	CASTG	1 cut(s)	231
XapI	RAATTY	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.