RLG00000020856

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001256
Physical Location & Seq
Forward (+)
69483675 .. 69484281
607 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020856

Sequence Viewer

Length: 607 bp
ATGGCTCTCAACCCTAGCCGCCTTAGGCTGAGGCTTCAATGGCGATGTTTATCGTCAATCACTTTCTCAATCTATGCCAACTCTTTACCCGTTGGGGAGAGAGGTGGAAACTACAAAGAAGGCGTCGGCGGCAGACCCCCAAGGACGAGCCTCGTGCGCTTTCCTCCAAGCGGCAACTGTGGCTTACTCCTAGAAGCGGGCAAAGTTTGCGGCAATTGGCGGTATGGTGCTCCTGCATCCGCTTTTTCTGATGAATCGGATCTCCGACTTGCCTCAAGATGGGGGTGGATACGAGGCTGGCCCTCGGGTTTGAACTTGAGGAGGCCTTGTTCTGGCGTCATCGAGCTCTGGGTTCTGAGGAAAATGGTGAGGCCGGTGGTTCATCGCCGAAGCAAACTTGTAGAGGAAGAAGAGTCTGATGAAGGTGGTTGGTCTCGGCCGCGACGGGGGCGTCTCAAGGTGGACGAAAGCCTTGATGATTCTCGGTGTTGGATTAGAGTTTTGCGAGATCTGAATTCGGTTGTGGATCTGGGTTGGAGACGAGATGGCCTACATTTTGTATGTGCGGCGAAGGTGGAGGCCGTGACAGTGATCGGAGCAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.65

Weight (kDa)

10.11

Isoelectric Point (pI)

61.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 450
AccII CGCG 1 cut(s) 442
AciI CCGC 9 cut(s) 19, 129, 171, 197, 210, 220, 240, 440, 566
AclWI GGATC 2 cut(s) 267, 534
AcoI YGGCCR 1 cut(s) 437
AcsI RAATTY 1 cut(s) 514
AcyI GRCGYC 3 cut(s) 123, 336, 451
AfiI CCNNNNNNNGG 5 cut(s) 170, 196, 279, 332, 446
AgsI TTSAA 2 cut(s) 38, 313
AloI GAACNNNNNNTCC 2 cut(s) 313, 345
AluBI AGCT 1 cut(s) 346
AluI AGCT 1 cut(s) 346
Alw21I GWGCWC 2 cut(s) 232, 348
Alw26I GTCTC 3 cut(s) 438, 458, 532
AlwI GGATC 2 cut(s) 267, 534
Ama87I CYCGRG 1 cut(s) 304
AoxI GGCC 6 cut(s) 299, 323, 371, 437, 547, 579
ApoI RAATTY 1 cut(s) 514
ArsI GACNNNNNNTTYG 2 cut(s) 108, 140
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 300
AsuHPI GGTGA 1 cut(s) 379
AvaI CYCGRG 1 cut(s) 304
AxyI CCTNAGG 1 cut(s) 23
BanII GRGCYC 1 cut(s) 348
BauI CACGAG 1 cut(s) 152
Bbv12I GWGCWC 2 cut(s) 232, 348
BbvCI CCTCAGC 1 cut(s) 29
BccI CCATC 2 cut(s) 273, 539
BceAI ACGGC 1 cut(s) 566
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciVI GTATCC 1 cut(s) 282
BcoDI GTCTC 3 cut(s) 438, 458, 532
BfaI CTAG 2 cut(s) 15, 191
BfuI GTATCC 1 cut(s) 282
BglII AGATCT 1 cut(s) 508
BisI GCNGC 6 cut(s) 19, 130, 172, 211, 440, 567
BlsI GCNGC 6 cut(s) 20, 131, 173, 212, 441, 568
BmeT110I CYCGRG 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 300
BmsI GCATC 1 cut(s) 245
Bpu10I CCTNAGC 1 cut(s) 29
BpuEI CTTGAG 3 cut(s) 259, 337, 440
BsaBI GATNNNNATC 1 cut(s) 49
BsaHI GRCGYC 3 cut(s) 123, 336, 451
BsaI GGTCTC 1 cut(s) 438
BsaJI CCNNGG 2 cut(s) 140, 303
BsaXI ACNNNNNCTCC 3 cut(s) 313, 343, 588
Bsc4I CCNNNNNNNGG 5 cut(s) 170, 196, 279, 332, 446
Bse118I RCCGGY 1 cut(s) 373
Bse21I CCTNAGG 1 cut(s) 23
Bse8I GATNNNNATC 1 cut(s) 49
BseDI CCNNGG 2 cut(s) 140, 303
BseGI GGATG 1 cut(s) 236
BseJI GATNNNNATC 1 cut(s) 49
BseLI CCNNNNNNNGG 5 cut(s) 170, 196, 279, 332, 446
BseMII CTCAG 2 cut(s) 20, 347
BseRI GAGGAG 1 cut(s) 334
BseX3I CGGCCG 1 cut(s) 437
Bsh1236I CGCG 1 cut(s) 442
Bsh1285I CGRYCG 1 cut(s) 440
BshFI GGCC 6 cut(s) 301, 325, 373, 439, 549, 581
BsiEI CGRYCG 1 cut(s) 440
BsiHKAI GWGCWC 2 cut(s) 232, 348
BsiHKCI CYCGRG 1 cut(s) 304
BsiSI CCGG 1 cut(s) 374
BslI CCNNNNNNNGG 5 cut(s) 170, 196, 279, 332, 446
BsmAI GTCTC 3 cut(s) 438, 458, 532
BsmBI CGTCTC 2 cut(s) 458, 532
BsnI GGCC 6 cut(s) 301, 325, 373, 439, 549, 581
Bso31I GGTCTC 1 cut(s) 438
BsoBI CYCGRG 1 cut(s) 304
Bsp1286I GDGCHC 2 cut(s) 232, 348
Bsp143I GATC 4 cut(s) 259, 508, 526, 591
BspACI CCGC 9 cut(s) 19, 129, 171, 197, 210, 220, 240, 440, 566
BspANI GGCC 6 cut(s) 301, 325, 373, 439, 549, 581
BspCNI CTCAG 2 cut(s) 21, 348
BspFNI CGCG 1 cut(s) 442
BspPI GGATC 2 cut(s) 267, 534
BspTNI GGTCTC 1 cut(s) 438
BsrFI RCCGGY 1 cut(s) 373
BssAI RCCGGY 1 cut(s) 373
BssECI CCNNGG 2 cut(s) 140, 303
BssMI GATC 4 cut(s) 259, 508, 526, 591
BssNI GRCGYC 3 cut(s) 123, 336, 451
BssSI CACGAG 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 140
Bst2BI CACGAG 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 179, 589
Bst6I CTCTTC 1 cut(s) 405
BstACI GRCGYC 3 cut(s) 123, 336, 451
BstAPI GCANNNNNTGC 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 199, 299
BstDEI CTNAG 3 cut(s) 23, 29, 356
BstF5I GGATG 1 cut(s) 236
BstFNI CGCG 1 cut(s) 442
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 4 cut(s) 262, 511, 529, 594
BstMAI GTCTC 3 cut(s) 438, 458, 532
BstMBI GATC 4 cut(s) 259, 508, 526, 591
BstMCI CGRYCG 1 cut(s) 440
BstMWI GCNNNNNNNGC 6 cut(s) 40, 129, 156, 180, 207, 448
BstUI CGCG 1 cut(s) 442
BstX2I RGATCY 3 cut(s) 259, 508, 526
BstYI RGATCY 3 cut(s) 259, 508, 526
BstZI CGGCCG 1 cut(s) 437
Bsu36I CCTNAGG 1 cut(s) 23
BsuI GTATCC 1 cut(s) 282
BsuRI GGCC 6 cut(s) 301, 325, 373, 439, 549, 581
BtgZI GCGATG 2 cut(s) 58, 368
BtsCI GGATG 1 cut(s) 236
BtsIMutI CAGTG 1 cut(s) 594
Cac8I GCNNGC 2 cut(s) 199, 299
CfoI GCGC 1 cut(s) 159
Cfr10I RCCGGY 1 cut(s) 373
Cfr13I GGNCC 1 cut(s) 300
CseI GACGC 3 cut(s) 112, 325, 440
DdeI CTNAG 3 cut(s) 23, 29, 356
DpnI GATC 4 cut(s) 261, 510, 528, 593
DpnII GATC 4 cut(s) 259, 508, 526, 591
DrdI GACNNNNNNGTC 1 cut(s) 450
DseDI GACNNNNNNGTC 1 cut(s) 450
EaeI YGGCCR 1 cut(s) 437
EagI CGGCCG 1 cut(s) 437
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Ecl136II GAGCTC 1 cut(s) 346
EclXI CGGCCG 1 cut(s) 437
Eco130I CCWWGG 1 cut(s) 140
Eco147I AGGCCT 1 cut(s) 325
Eco24I GRGCYC 1 cut(s) 348
Eco31I GGTCTC 1 cut(s) 438
Eco52I CGGCCG 1 cut(s) 437
Eco53kI GAGCTC 1 cut(s) 346
Eco81I CCTNAGG 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 304
EcoICRI GAGCTC 1 cut(s) 346
EcoRI GAATTC 1 cut(s) 514
EcoT14I CCWWGG 1 cut(s) 140
EcoT38I GRGCYC 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 140
Esp3I CGTCTC 2 cut(s) 458, 532
FaiI YATR 3 cut(s) 75, 225, 562
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 6 cut(s) 19, 130, 172, 211, 440, 567
FokI GGATG 1 cut(s) 223
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 6 cut(s) 19, 130, 172, 211, 440, 567
FspBI CTAG 2 cut(s) 15, 191
GlaI GCGC 1 cut(s) 158
GluI GCNGC 6 cut(s) 19, 130, 172, 211, 440, 567
HaeIII GGCC 6 cut(s) 301, 325, 373, 439, 549, 581
HapII CCGG 1 cut(s) 374
HgaI GACGC 3 cut(s) 112, 325, 440
HhaI GCGC 1 cut(s) 159
Hin1I GRCGYC 3 cut(s) 123, 336, 451
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HinfI GANTC 3 cut(s) 254, 413, 479
HpaII CCGG 1 cut(s) 374
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 7 cut(s) 250, 259, 266, 357, 418, 513, 596
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 1 cut(s) 463
Hpy99I CGWCG 2 cut(s) 128, 447
HpyAV CCTTC 3 cut(s) 113, 416, 565
HpyCH4III ACNGT 2 cut(s) 179, 589
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 6 cut(s) 40, 129, 156, 180, 207, 448
HpyF3I CTNAG 3 cut(s) 23, 29, 356
Hsp92I GRCGYC 3 cut(s) 123, 336, 451
HspAI GCGC 1 cut(s) 157
Kzo9I GATC 4 cut(s) 259, 508, 526, 591
LmnI GCTCC 2 cut(s) 235, 596
LpnPI CCDG 7 cut(s) 246, 283, 318, 334, 387, 515, 585
LweI GCATC 1 cut(s) 245
MaeI CTAG 2 cut(s) 15, 191
MaeIII GTNAC 1 cut(s) 583
MalI GATC 4 cut(s) 261, 510, 528, 593
MboI GATC 4 cut(s) 259, 508, 526, 591
MboII GAAGA 2 cut(s) 419, 422
MfeI CAATTG 1 cut(s) 214
MflI RGATCY 3 cut(s) 259, 508, 526
MhlI GDGCHC 2 cut(s) 232, 348
MluCI AATT 2 cut(s) 214, 514
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 3 cut(s) 289, 470, 515
MspI CCGG 1 cut(s) 374
MunI CAATTG 1 cut(s) 214
MvnI CGCG 1 cut(s) 442
MwoI GCNNNNNNNGC 6 cut(s) 40, 129, 156, 180, 207, 448
NdeII GATC 4 cut(s) 259, 508, 526, 591
NmeAIII GCCGAG 1 cut(s) 415
NmuCI GTSAC 1 cut(s) 583
PceI AGGCCT 1 cut(s) 325
PfeI GAWTC 2 cut(s) 254, 479
PkrI GCNGC 6 cut(s) 20, 131, 173, 212, 441, 568
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
Psp124BI GAGCTC 1 cut(s) 348
PspPI GGNCC 1 cut(s) 300
PsuI RGATCY 3 cut(s) 259, 508, 526
SacI GAGCTC 1 cut(s) 348
SatI GCNGC 6 cut(s) 19, 130, 172, 211, 440, 567
Sau3AI GATC 4 cut(s) 259, 508, 526, 591
Sau96I GGNCC 1 cut(s) 300
SchI GAGTC 1 cut(s) 422
SduI GDGCHC 2 cut(s) 232, 348
SetI ASST 5 cut(s) 106, 348, 427, 462, 576
SfaNI GCATC 1 cut(s) 245
SmlI CTYRAG 3 cut(s) 274, 316, 455
SmoI CTYRAG 3 cut(s) 274, 316, 455
Sse9I AATT 2 cut(s) 214, 514
SseBI AGGCCT 1 cut(s) 325
SsiI CCGC 9 cut(s) 19, 129, 171, 197, 210, 220, 240, 440, 566
SspMI CTAG 2 cut(s) 15, 191
SstI GAGCTC 1 cut(s) 348
StuI AGGCCT 1 cut(s) 325
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 2 cut(s) 179, 589
TaqI TCGA 1 cut(s) 342
TasI AATT 2 cut(s) 214, 514
TauI GCSGC 6 cut(s) 21, 132, 174, 213, 442, 569
TfiI GAWTC 2 cut(s) 254, 479
TscAI CASTG 1 cut(s) 594
TseFI GTSAC 1 cut(s) 583
Tsp45I GTSAC 1 cut(s) 583
TspDTI ATGAA 3 cut(s) 267, 371, 435
TspRI CASTG 1 cut(s) 594
XapI RAATTY 1 cut(s) 514
XspI CTAG 2 cut(s) 15, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.