Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Reverse (-)

52920817 .. 52924036

Gene Structure 3220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG265000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCTGGTGTGTCTCAGTTGCAGAAGCAGTTTGTTGACTACAAAGCCTCACTCTTTCAAGAGGGGGTTCTGGATGAACAGTTTGACCAACTTCAGGGACTACAAGATGAGAGCAACCCAAATTTTGTGGTTGAAGTGGTGTCTCTCTTCTTTCAAGATTCTGAGAGGCTTCTCAATGACCTGACCAAGACTCTAAACCAGCAGGGTGTTGACTTCAAAAAGGTCGGTGCCAATGTATTATGCTTGAAGATTTGCCGAATGAATGTCAAATTAAACCAAAACACACTACTCTTCAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

100

Amino Acids

11.4

Weight (kDa)

4.95

Isoelectric Point (pI)

25.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AcsI	RAATTY	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	6 cut(s)	59, 134, 155, 217, 247, 295
Alw26I	GTCTC	2 cut(s)	18, 147
ApoI	RAATTY	1 cut(s)	121
BanI	GGYRCC	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	18, 147
BmiI	GGNNCC	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	2 cut(s)	29, 153
BshNI	GGYRCC	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	2 cut(s)	18, 147
BsmFI	GGGAC	1 cut(s)	111
BspCNI	CTCAG	2 cut(s)	28, 154
BspLI	GGNNCC	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	2 cut(s)	152, 296
BstDEI	CTNAG	2 cut(s)	15, 162
BstF5I	GGATG	1 cut(s)	79
BstMAI	GTCTC	2 cut(s)	18, 147
BtsCI	GGATG	1 cut(s)	79
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviJI	RGCY	3 cut(s)	5, 47, 169
CviKI_1	RGCY	3 cut(s)	5, 47, 169
DdeI	CTNAG	2 cut(s)	15, 162
Eam1104I	CTCTTC	2 cut(s)	152, 296
EarI	CTCTTC	2 cut(s)	152, 296
Eco57I	CTGAAG	1 cut(s)	77
FaiI	YATR	2 cut(s)	241, 301
FaqI	GGGAC	1 cut(s)	111
FokI	GGATG	1 cut(s)	86
HincII	GTYRAC	2 cut(s)	37, 211
HindII	GTYRAC	2 cut(s)	37, 211
HinfI	GANTC	2 cut(s)	158, 190
Hpy166II	GTNNAC	2 cut(s)	37, 211
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	3 cut(s)	59, 71, 155
Hpy8I	GTNNAC	2 cut(s)	37, 211
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	22
HpyF3I	CTNAG	2 cut(s)	15, 162
LpnPI	CCDG	5 cut(s)	56, 80, 188, 194, 212
MboII	GAAGA	3 cut(s)	139, 259, 283
MluCI	AATT	2 cut(s)	121, 269
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	3 cut(s)	55, 58, 159
MseI	TTAA	1 cut(s)	272
NlaIV	GGNNCC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	158
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	272
SchI	GAGTC	1 cut(s)	184
SetI	ASST	2 cut(s)	183, 225
Sse9I	AATT	2 cut(s)	121, 269
TaaI	ACNGT	1 cut(s)	81
TasI	AATT	2 cut(s)	121, 269
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	90, 275
XapI	RAATTY	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.