Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Reverse (-)

18339124 .. 18342764

Gene Structure 3641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG202600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCTTTACCTGGACTTAAGCAGCAGCTCCAGCACCTAATCGAATCCATGGTGAACGAGGGTATCTTAGTTGAACAGCAGTTTGCTCAAGTGCAAGAGTTGAAAACTTCAGACAATCCTAATTTTGTTTCCCAAATCCTCAACGATTTCTGTGATGGCGCAGAGACAAGTATAACTAATTTGAATAAGTTTCTATGTGAAGAACAAGTTGAATTTGACAAGTTAGATACAAGTATTCATCTTTTAAAAGGAAGTAGCTCAAGCATTGGAGCATATCAAATGCGTCTTGCTACTGTTGACCTTGTTAAAGCTGTTGATGAAAAGGACAAGGAAATGTCCTTGGAGGCCTTGAAGAAAGTCACACATGAGTACCTGAGAATACAGTACAAATTGCAGACCATTATTCAGCTGGAGAACAAGATGTATGATATTGAATCCAAACCACTATTACATGATGGAAATTGTGCAGCAGGGCCTTCATATACAAAAGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009927 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023052 GO:0023056 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0080036 GO:0080038 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

165

Amino Acids

18.64

Weight (kDa)

4.88

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	45 - 123	3.2e-07	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	2 cut(s)	371, 386
AflII	CTTAAG	1 cut(s)	17
AgsI	TTSAA	6 cut(s)	74, 103, 184, 212, 352, 434
AjnI	CCWGG	1 cut(s)	10
AluBI	AGCT	4 cut(s)	28, 258, 311, 409
AluI	AGCT	4 cut(s)	28, 258, 311, 409
Alw26I	GTCTC	1 cut(s)	158
AoxI	GGCC	2 cut(s)	345, 473
ApeKI	GCWGC	3 cut(s)	22, 25, 467
ApoI	RAATTY	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	473
AsuHPI	GGTGA	1 cut(s)	64
BaeI	ACNNNNGTAYC	4 cut(s)	46, 79, 353, 386
BbvI	GCAGC	3 cut(s)	34, 37, 479
BccI	CCATC	2 cut(s)	149, 449
BciT130I	CCWGG	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	158
BfrI	CTTAAG	1 cut(s)	17
BisI	GCNGC	3 cut(s)	23, 26, 468
BlsI	GCNGC	3 cut(s)	24, 27, 469
Bme1390I	CCNGG	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	473
BmrFI	CCNGG	1 cut(s)	12
BpmI	CTGGAG	2 cut(s)	14, 431
BpuEI	CTTGAG	2 cut(s)	72, 244
BsaJI	CCNNGG	2 cut(s)	48, 339
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	48, 339
BseMII	CTCAG	1 cut(s)	365
BseXI	GCAGC	3 cut(s)	34, 37, 479
BsgI	GTGCAG	1 cut(s)	486
BshFI	GGCC	2 cut(s)	347, 475
BsmAI	GTCTC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	347, 475
Bsp19I	CCATGG	1 cut(s)	48
BspANI	GGCC	2 cut(s)	347, 475
BspCNI	CTCAG	1 cut(s)	366
BspTI	CTTAAG	1 cut(s)	17
BssECI	CCNNGG	2 cut(s)	48, 339
BssT1I	CCWWGG	2 cut(s)	48, 339
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	2 cut(s)	295, 384
BstAFI	CTTAAG	1 cut(s)	17
BstDEI	CTNAG	2 cut(s)	67, 374
BstDSI	CCRYGG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	161
BstMAI	GTCTC	1 cut(s)	158
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	12
BstSCI	CCNGG	1 cut(s)	10
BstV1I	GCAGC	3 cut(s)	34, 37, 479
BsuRI	GGCC	2 cut(s)	347, 475
BtgI	CCRYGG	1 cut(s)	48
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	473
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	370, 385
CviAII	CATG	3 cut(s)	49, 365, 452
CviJI	RGCY	7 cut(s)	5, 28, 258, 311, 347, 409, 475
CviKI_1	RGCY	7 cut(s)	5, 28, 258, 311, 347, 409, 475
CviQI	GTAC	2 cut(s)	370, 385
DdeI	CTNAG	2 cut(s)	67, 374
DraI	TTTAAA	1 cut(s)	246
Eco130I	CCWWGG	2 cut(s)	48, 339
Eco147I	AGGCCT	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	10
EcoT14I	CCWWGG	2 cut(s)	48, 339
ErhI	CCWWGG	2 cut(s)	48, 339
FaeI	CATG	3 cut(s)	52, 368, 455
FatI	CATG	3 cut(s)	48, 364, 451
Fnu4HI	GCNGC	3 cut(s)	23, 26, 468
Fsp4HI	GCNGC	3 cut(s)	23, 26, 468
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	3 cut(s)	23, 26, 468
GsuI	CTGGAG	2 cut(s)	14, 431
HaeIII	GGCC	2 cut(s)	347, 475
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	3 cut(s)	52, 368, 455
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	2 cut(s)	44, 434
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	55, 298
Hpy188I	TCNGA	1 cut(s)	112
Hpy8I	GTNNAC	2 cut(s)	55, 298
HpyAV	CCTTC	1 cut(s)	486
HpyCH4III	ACNGT	2 cut(s)	295, 384
HpyCH4V	TGCA	3 cut(s)	94, 394, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	2 cut(s)	67, 374
Hsp92II	CATG	3 cut(s)	52, 368, 455
HspAI	GCGC	1 cut(s)	159
LmnI	GCTCC	2 cut(s)	33, 269
LpnPI	CCDG	5 cut(s)	24, 44, 386, 395, 456
Lsp1109I	GCAGC	3 cut(s)	34, 37, 479
MaeIII	GTNAC	1 cut(s)	358
MboII	GAAGA	2 cut(s)	212, 364
MluCI	AATT	5 cut(s)	121, 178, 212, 389, 460
MnlI	CCTC	3 cut(s)	52, 149, 337
MseI	TTAA	3 cut(s)	18, 245, 306
MspA1I	CMGCKG	1 cut(s)	409
MspCI	CTTAAG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	31
NcoI	CCATGG	1 cut(s)	48
NlaIII	CATG	3 cut(s)	52, 368, 455
NmuCI	GTSAC	1 cut(s)	358
PceI	AGGCCT	1 cut(s)	347
PfeI	GAWTC	2 cut(s)	44, 434
PkrI	GCNGC	3 cut(s)	24, 27, 469
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	473
PvuII	CAGCTG	1 cut(s)	409
RsaI	GTAC	2 cut(s)	371, 386
RsaNI	GTAC	2 cut(s)	370, 385
SaqAI	TTAA	3 cut(s)	18, 245, 306
SatI	GCNGC	3 cut(s)	23, 26, 468
Sau96I	GGNCC	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	12
SetI	ASST	8 cut(s)	13, 30, 39, 260, 303, 313, 375, 411
SmlI	CTYRAG	3 cut(s)	17, 87, 259
SmoI	CTYRAG	3 cut(s)	17, 87, 259
Sse9I	AATT	5 cut(s)	121, 178, 212, 389, 460
SseBI	AGGCCT	1 cut(s)	347
StuI	AGGCCT	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	10
StyI	CCWWGG	2 cut(s)	48, 339
TaaI	ACNGT	2 cut(s)	295, 384
TaqI	TCGA	1 cut(s)	42
TasI	AATT	5 cut(s)	121, 178, 212, 389, 460
TatI	WGTACW	1 cut(s)	384
TfiI	GAWTC	2 cut(s)	44, 434
Tru1I	TTAA	3 cut(s)	18, 245, 306
Tru9I	TTAA	3 cut(s)	18, 245, 306
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	3 cut(s)	22, 25, 467
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	3 cut(s)	227, 333, 468
Vha464I	CTTAAG	1 cut(s)	17
XapI	RAATTY	1 cut(s)	212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.