Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Forward (+)

28952054 .. 28954198

Gene Structure 2145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G332500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAGTGCTGTGAAGCTTGAGAGTGAAACAATGGCTGATGTTGTGTCTCACTTGCAGAAGCAGTTGGTTGACTACACAGCTTCACTGTTTGATGAGGCATTTCTGGATGAACAGTTCAACCAGCTTCAGCAACTGCAAGATGAGAACAACCCAGATTTTGTAGTTGAAGTTGTGTCTCTTTTCTTTAAAGATTCTGAAAGGCTTATGGATGAACTGAACAAAGCTCTCGATCAGCAGACTGTTGACTTTAAACTTGTGGACAAAAATATTCACCAATTGAAGGGTAGCAGCTCCAGCATTGGTGTTCAGAGGTTTCAGAGGGCCTGCATTGCATTTCGTGACTGCAGTGAGGAGCAGAATGTTGAAGGGTGCCTAAAGTCTCTCCAGCATGTGAAGCATGAGTATTTTCTTGTGAAAAATAAGCTGGAAACTCTTTTCAACCTGCAGAAACAGCTTTTGGCCGCCGGCGGTCCACTGCCAGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

163

Amino Acids

18.47

Weight (kDa)

4.97

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	450
AccB1I	GGYRCC	1 cut(s)	369
AciI	CCGC	2 cut(s)	462, 468
AcoI	YGGCCR	1 cut(s)	459
AcuI	CTGAAG	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	280, 479
AgsI	TTSAA	5 cut(s)	118, 167, 280, 365, 439
AjnI	CCWGG	1 cut(s)	478
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AloI	GAACNNNNNNTCC	2 cut(s)	98, 130
AluBI	AGCT	7 cut(s)	16, 80, 124, 224, 291, 424, 454
AluI	AGCT	7 cut(s)	16, 80, 124, 224, 291, 424, 454
Alw26I	GTCTC	3 cut(s)	51, 180, 384
AlwNI	CAGNNNCTG	1 cut(s)	133
AoxI	GGCC	2 cut(s)	321, 459
ApeKI	GCWGC	1 cut(s)	288
AspS9I	GGNCC	2 cut(s)	321, 470
AsuHPI	GGTGA	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	369
BbvI	GCAGC	1 cut(s)	300
BciT130I	CCWGG	1 cut(s)	480
BcoDI	GTCTC	3 cut(s)	51, 180, 384
BfmI	CTRYAG	2 cut(s)	343, 443
BfuAI	ACCTGC	1 cut(s)	450
BisI	GCNGC	2 cut(s)	289, 462
BlsI	GCNGC	2 cut(s)	290, 463
Bme1390I	CCNGG	1 cut(s)	480
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	2 cut(s)	321, 470
BmiI	GGNNCC	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	480
BpmI	CTGGAG	2 cut(s)	277, 368
BpuEI	CTTGAG	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 479
Bse118I	RCCGGY	1 cut(s)	464
Bse3DI	GCAATG	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	480
BseGI	GGATG	2 cut(s)	112, 214
BseLI	CCNNNNNNNGG	2 cut(s)	280, 479
BseMI	GCAATG	1 cut(s)	327
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	1 cut(s)	300
BshFI	GGCC	2 cut(s)	323, 461
BshNI	GGYRCC	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	465
BslI	CCNNNNNNNGG	2 cut(s)	280, 479
BsmAI	GTCTC	3 cut(s)	51, 180, 384
BsnI	GGCC	2 cut(s)	323, 461
Bsp143I	GATC	1 cut(s)	229
BspACI	CCGC	2 cut(s)	462, 468
BspANI	GGCC	2 cut(s)	323, 461
BspLI	GGNNCC	1 cut(s)	371
BspMAI	CTGCAG	2 cut(s)	347, 447
BspMI	ACCTGC	1 cut(s)	450
BspT107I	GGYRCC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	464
BssAI	RCCGGY	1 cut(s)	464
BssMI	GATC	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	3 cut(s)	87, 114, 241
BstC8I	GCNNGC	2 cut(s)	325, 466
BstF5I	GGATG	2 cut(s)	112, 214
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	3 cut(s)	51, 180, 384
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	4 cut(s)	294, 329, 394, 451
BstNI	CCWGG	1 cut(s)	480
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	478
BstSFI	CTRYAG	2 cut(s)	343, 443
BstV1I	GCAGC	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	323, 461
BtsCI	GGATG	2 cut(s)	112, 214
BtsI	GCAGTG	2 cut(s)	352, 473
BtsIMutI	CAGTG	3 cut(s)	83, 352, 473
BveI	ACCTGC	1 cut(s)	450
Cac8I	GCNNGC	2 cut(s)	325, 466
CaiI	CAGNNNCTG	1 cut(s)	133
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	2 cut(s)	321, 470
CviAII	CATG	2 cut(s)	389, 398
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
DraI	TTTAAA	2 cut(s)	187, 250
EaeI	YGGCCR	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	470
Eco57I	CTGAAG	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	478
FaeI	CATG	2 cut(s)	392, 401
FaiI	YATR	3 cut(s)	206, 390, 399
FatI	CATG	2 cut(s)	388, 397
Fnu4HI	GCNGC	2 cut(s)	289, 462
FokI	GGATG	2 cut(s)	119, 221
Fsp4HI	GCNGC	2 cut(s)	289, 462
GluI	GCNGC	2 cut(s)	289, 462
GsuI	CTGGAG	2 cut(s)	277, 368
HaeIII	GGCC	2 cut(s)	323, 461
HapII	CCGG	1 cut(s)	465
Hin1II	CATG	2 cut(s)	392, 401
HincII	GTYRAC	2 cut(s)	70, 244
HindII	GTYRAC	2 cut(s)	70, 244
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	4 cut(s)	70, 244, 259, 473
Hpy188I	TCNGA	3 cut(s)	196, 309, 318
Hpy188III	TCNNGA	3 cut(s)	104, 227, 338
Hpy8I	GTNNAC	4 cut(s)	70, 244, 259, 473
HpyAV	CCTTC	2 cut(s)	274, 359
HpyCH4III	ACNGT	3 cut(s)	87, 114, 241
HpyCH4V	TGCA	6 cut(s)	55, 136, 327, 332, 345, 445
HpyF10VI	GCNNNNNNNGC	4 cut(s)	294, 329, 394, 451
Hsp92II	CATG	2 cut(s)	392, 401
KroI	GCCGGC	1 cut(s)	464
KroNI	GCCGGC	1 cut(s)	466
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	2 cut(s)	296, 352
Lsp1109I	GCAGC	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MfeI	CAATTG	1 cut(s)	275
MluCI	AATT	1 cut(s)	275
MnlI	CCTC	4 cut(s)	88, 303, 312, 343
MreI	CGCCGGCG	1 cut(s)	464
MroNI	GCCGGC	1 cut(s)	464
MseI	TTAA	2 cut(s)	186, 249
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	1 cut(s)	480
MunI	CAATTG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	480
MwoI	GCNNNNNNNGC	4 cut(s)	294, 329, 394, 451
NaeI	GCCGGC	1 cut(s)	466
NdeII	GATC	1 cut(s)	229
NgoMIV	GCCGGC	1 cut(s)	464
NlaIII	CATG	2 cut(s)	392, 401
NlaIV	GGNNCC	1 cut(s)	371
NmuCI	GTSAC	1 cut(s)	338
NspI	RCATGY	1 cut(s)	392
PdiI	GCCGGC	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	290, 463
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	1 cut(s)	371
PspPI	GGNCC	2 cut(s)	321, 470
PstI	CTGCAG	2 cut(s)	347, 447
PstNI	CAGNNNCTG	1 cut(s)	133
SaqAI	TTAA	2 cut(s)	186, 249
SatI	GCNGC	2 cut(s)	289, 462
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	2 cut(s)	321, 470
ScrFI	CCNGG	1 cut(s)	480
SfcI	CTRYAG	2 cut(s)	343, 443
SgrAI	CRCCGGYG	1 cut(s)	464
SinI	GGWCC	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	1 cut(s)	275
SsiI	CCGC	2 cut(s)	462, 468
SspI	AATATT	1 cut(s)	268
StyD4I	CCNGG	1 cut(s)	478
TaaI	ACNGT	3 cut(s)	87, 114, 241
TaqI	TCGA	1 cut(s)	228
TasI	AATT	1 cut(s)	275
TauI	GCSGC	1 cut(s)	464
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	2 cut(s)	186, 249
Tru9I	TTAA	2 cut(s)	186, 249
TscAI	CASTG	3 cut(s)	90, 352, 480
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	1 cut(s)	288
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	2 cut(s)	123, 225
TspRI	CASTG	3 cut(s)	90, 352, 480
VpaK11BI	GGWCC	1 cut(s)	470
XceI	RCATGY	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.