Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Forward (+)

46327790 .. 46328973

Gene Structure 1184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025510

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCTGGTGTGTCTCAGTTGCAGAAGCAGTTTGTTGACTACAAAGCCTCACTCTTTCAAGAGGGGGTTCTGGATGAACAGTTTGACCAACTTCAGGGACTGCAAGATGAGAGCAACCCAAATTTTGTGGTTGAAGTGGTGACTCTCTTCTTTCAAGATTCTGAGAGGCTTCTCAATGACCTGACCAAGACTCTGGTTTATCACACAGATATGTCATATCAGCAAACCGTTCATACTTTGAGATGCATTGGTGCTCAGAGGGTTCAGAGAGTCTGCATTGCATTTCGTAACTACGGTGAGGAGCACAACATTGAAGGGTGCCTAAAATCTCTTCAGCTAGTGAAGCATGAATATGCCATTGTGAAAAATAAACTCGAAACTCTTTTCAACCTGGAGCAACAGATTTTGGCTGCCGGCGGCATTGTACCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

145

Amino Acids

16.52

Weight (kDa)

5.31

Isoelectric Point (pI)

49.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	318
AciI	CCGC	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	121
AcuI	CTGAAG	2 cut(s)	77, 317
AfaI	GTAC	1 cut(s)	426
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	5 cut(s)	59, 134, 155, 314, 388
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	1 cut(s)	337
AluI	AGCT	1 cut(s)	337
Alw21I	GWGCWC	2 cut(s)	256, 306
Alw26I	GTCTC	1 cut(s)	18
AlwNI	CAGNNNCTG	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	1 cut(s)	121
AsuHPI	GGTGA	2 cut(s)	151, 308
BanI	GGYRCC	1 cut(s)	318
Bbv12I	GWGCWC	2 cut(s)	256, 306
BbvI	GCAGC	1 cut(s)	397
BciT130I	CCWGG	1 cut(s)	392
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	1 cut(s)	338
BisI	GCNGC	2 cut(s)	411, 418
BlsI	GCNGC	2 cut(s)	412, 419
Bme1390I	CCNGG	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	1 cut(s)	392
BmsI	GCATC	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse118I	RCCGGY	1 cut(s)	413
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	392
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	3 cut(s)	29, 153, 269
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	1 cut(s)	397
BshNI	GGYRCC	1 cut(s)	318
BsiHKAI	GWGCWC	2 cut(s)	256, 306
BsiSI	CCGG	1 cut(s)	414
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	111
Bsp1286I	GDGCHC	2 cut(s)	256, 306
BspACI	CCGC	1 cut(s)	417
BspCNI	CTCAG	3 cut(s)	28, 154, 268
BspLI	GGNNCC	1 cut(s)	320
BspT107I	GGYRCC	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	413
BssAI	RCCGGY	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	428
BssT1I	CCWWGG	1 cut(s)	428
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	3 cut(s)	81, 229, 296
Bst6I	CTCTTC	2 cut(s)	152, 336
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	3 cut(s)	15, 162, 255
BstF5I	GGATG	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstNI	CCWGG	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	397
BstXI	CCANNNNNNTGG	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	415
CaiI	CAGNNNCTG	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	425
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	1 cut(s)	347
CviJI	RGCY	5 cut(s)	5, 47, 169, 337, 410
CviKI_1	RGCY	5 cut(s)	5, 47, 169, 337, 410
CviQI	GTAC	1 cut(s)	425
DdeI	CTNAG	3 cut(s)	15, 162, 255
Eam1104I	CTCTTC	2 cut(s)	152, 336
EarI	CTCTTC	2 cut(s)	152, 336
Eco130I	CCWWGG	1 cut(s)	428
Eco57I	CTGAAG	2 cut(s)	77, 317
EcoRII	CCWGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	428
EcoT22I	ATGCAT	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	428
FaeI	CATG	1 cut(s)	350
FaiI	YATR	5 cut(s)	212, 217, 234, 348, 354
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	1 cut(s)	346
Fnu4HI	GCNGC	2 cut(s)	411, 418
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	411, 418
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	2 cut(s)	411, 418
GsuI	CTGGAG	1 cut(s)	413
HapII	CCGG	1 cut(s)	414
Hin1II	CATG	1 cut(s)	350
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	4 cut(s)	142, 158, 190, 270
HpaII	CCGG	1 cut(s)	414
HphI	GGTGA	2 cut(s)	151, 308
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	3 cut(s)	163, 258, 267
Hpy188III	TCNNGA	3 cut(s)	59, 71, 155
Hpy8I	GTNNAC	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	3 cut(s)	81, 229, 296
HpyCH4V	TGCA	5 cut(s)	22, 103, 246, 276, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
HpyF3I	CTNAG	3 cut(s)	15, 162, 255
Hsp92II	CATG	1 cut(s)	350
KroI	GCCGGC	1 cut(s)	413
KroNI	GCCGGC	1 cut(s)	415
LmnI	GCTCC	2 cut(s)	301, 394
LpnPI	CCDG	7 cut(s)	56, 80, 179, 194, 377, 404, 427
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	1 cut(s)	233
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	2 cut(s)	139, 287
MboII	GAAGA	2 cut(s)	139, 323
MhlI	GDGCHC	2 cut(s)	256, 306
MluCI	AATT	1 cut(s)	121
MlyI	GAGTC	3 cut(s)	136, 184, 279
MnlI	CCTC	5 cut(s)	55, 58, 159, 252, 292
Mph1103I	ATGCAT	1 cut(s)	248
MroNI	GCCGGC	1 cut(s)	413
MslI	CAYNNNNRTG	2 cut(s)	209, 351
MspI	CCGG	1 cut(s)	414
MspR9I	CCNGG	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	392
MwoI	GCNNNNNNNGC	1 cut(s)	343
NaeI	GCCGGC	1 cut(s)	415
NgoMIV	GCCGGC	1 cut(s)	413
NlaIII	CATG	1 cut(s)	350
NlaIV	GGNNCC	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	139
NsiI	ATGCAT	1 cut(s)	248
PdiI	GCCGGC	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	412, 419
PleI	GAGTC	3 cut(s)	136, 184, 278
PpsI	GAGTC	3 cut(s)	136, 184, 278
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	1 cut(s)	320
PstNI	CAGNNNCTG	1 cut(s)	100
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
RseI	CAYNNNNRTG	2 cut(s)	209, 351
SatI	GCNGC	2 cut(s)	411, 418
SchI	GAGTC	3 cut(s)	136, 184, 279
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	2 cut(s)	256, 306
SetI	ASST	4 cut(s)	183, 339, 393, 434
SfaNI	GCATC	1 cut(s)	233
SmiMI	CAYNNNNRTG	2 cut(s)	209, 351
Sse9I	AATT	1 cut(s)	121
SsiI	CCGC	1 cut(s)	417
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	428
TaaI	ACNGT	3 cut(s)	81, 229, 296
TaqI	TCGA	1 cut(s)	375
TasI	AATT	1 cut(s)	121
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	1 cut(s)	158
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	410
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	3 cut(s)	90, 221, 363
XapI	RAATTY	1 cut(s)	121
XspI	CTAG	1 cut(s)	338
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.