Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Forward (+)

17202433 .. 17204879

Gene Structure 2447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G016310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCTCTCCACCCTAGCCGCCTTAGGCTGAGGCTTCAATGGCGATGTTTATCGTCAATCACTTTCTCAATCTATGCCAACTCTTTACCCGTTGGGGAGAAAGGTGGACACTACCAAGAAGGCGTCGGTGGCAGACCTCCAAAGACGAGCCTCGTGCACTTTCCTCCAAGCGGCAACGGTGGCTTGCTCCTAGAAGCGGGTAAAGTTTGCGGCAATTGGCTGTATGGTGCTCCTGCATCCGCCGTTTCTGATGAATCGGATCTCCGACTTGCCTCAAGATGGGGGCGGATAGGAGGCTGGCCCTCGGGTTTGAACTTGAGGAGGCCTTGTTCTGGCATCATCGAGCTCTGGGATCTGAGGAAAATGGTGAGGCCGGCGGTTCATCGCCGAAGCAAACTTGTAAAGGAAGAAGAGTCTGATGACGGTGGTCGGTCTCGGCCGCGTCGGGGGAGTCTCAAGGTGGATGAAAGTCTTGATGATTCTCGATGTGAAGAACAAGTTGAATTTGACAAGTTAAATACCGGTATTCATCTTTTAAAAGGAAGTAGCTCAAGCATTGGAGCATATCAAATGCGTCTTGCTACTGTTGACCTTGTTAAAGCTGTTGATGAAAAGGACAAGGAAAAGTCCTTGGAGGCCTTGAAGAAAGTCACACATGAGTACCTGAGAATACAGTACAAATTGCAGACCATTATTCAGCTGGAGAACAAGATGTGTGATATTGAATCCAAACCAGTATTACACGATGGAAATTGTGCAGCAGGGCCTTCATATACAAAAGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009927 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023052 GO:0023056 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0080036 GO:0080038 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

262

Amino Acids

29.11

Weight (kDa)

9.07

Isoelectric Point (pI)

57.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	442
AciI	CCGC	8 cut(s)	19, 171, 197, 210, 240, 286, 377, 440
AclWI	GGATC	2 cut(s)	267, 360
AcoI	YGGCCR	1 cut(s)	437
AcsI	RAATTY	1 cut(s)	503
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	2 cut(s)	662, 677
AfiI	CCNNNNNNNGG	5 cut(s)	170, 196, 279, 332, 446
AgeI	ACCGGT	1 cut(s)	521
AgsI	TTSAA	5 cut(s)	38, 313, 503, 643, 725
AloI	GAACNNNNNNTCC	2 cut(s)	313, 345
AluBI	AGCT	4 cut(s)	346, 549, 602, 700
AluI	AGCT	4 cut(s)	346, 549, 602, 700
Alw21I	GWGCWC	3 cut(s)	159, 232, 348
Alw26I	GTCTC	2 cut(s)	438, 458
Alw44I	GTGCAC	1 cut(s)	155
AlwI	GGATC	2 cut(s)	267, 360
Ama87I	CYCGRG	1 cut(s)	304
AoxI	GGCC	6 cut(s)	299, 323, 371, 437, 636, 764
ApaLI	GTGCAC	1 cut(s)	155
ApeKI	GCWGC	1 cut(s)	758
ApoI	RAATTY	1 cut(s)	503
AsiGI	ACCGGT	1 cut(s)	521
AspS9I	GGNCC	2 cut(s)	300, 764
AsuHPI	GGTGA	1 cut(s)	379
AvaI	CYCGRG	1 cut(s)	304
AxyI	CCTNAGG	1 cut(s)	23
BaeGI	GKGCMC	1 cut(s)	159
BaeI	ACNNNNGTAYC	2 cut(s)	644, 677
BanII	GRGCYC	1 cut(s)	348
BauI	CACGAG	1 cut(s)	152
Bbv12I	GWGCWC	3 cut(s)	159, 232, 348
BbvCI	CCTCAGC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	770
BccI	CCATC	2 cut(s)	273, 740
BceAI	ACGGC	1 cut(s)	227
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BcoDI	GTCTC	2 cut(s)	438, 458
BfaI	CTAG	2 cut(s)	15, 191
BisI	GCNGC	5 cut(s)	19, 172, 211, 440, 759
BlsI	GCNGC	5 cut(s)	20, 173, 212, 441, 760
BmeT110I	CYCGRG	1 cut(s)	304
BmgT120I	GGNCC	2 cut(s)	300, 764
BmsI	GCATC	2 cut(s)	245, 345
BoxI	GACNNNNGTC	1 cut(s)	426
BpmI	CTGGAG	1 cut(s)	722
Bpu10I	CCTNAGC	1 cut(s)	29
BpuEI	CTTGAG	4 cut(s)	259, 337, 440, 535
BsaBI	GATNNNNATC	1 cut(s)	49
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	438
BsaJI	CCNNGG	2 cut(s)	303, 630
BsaWI	WCCGGW	1 cut(s)	521
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	5 cut(s)	170, 196, 279, 332, 446
Bse118I	RCCGGY	2 cut(s)	373, 521
Bse1I	ACTGG	1 cut(s)	734
Bse21I	CCTNAGG	1 cut(s)	23
Bse8I	GATNNNNATC	1 cut(s)	49
BseDI	CCNNGG	2 cut(s)	303, 630
BseGI	GGATG	2 cut(s)	236, 469
BseJI	GATNNNNATC	1 cut(s)	49
BseLI	CCNNNNNNNGG	5 cut(s)	170, 196, 279, 332, 446
BseMII	CTCAG	3 cut(s)	20, 347, 656
BseNI	ACTGG	1 cut(s)	734
BseRI	GAGGAG	1 cut(s)	334
BseSI	GKGCMC	1 cut(s)	159
BseX3I	CGGCCG	1 cut(s)	437
BseXI	GCAGC	1 cut(s)	770
BsgI	GTGCAG	1 cut(s)	777
Bsh1236I	CGCG	1 cut(s)	442
Bsh1285I	CGRYCG	1 cut(s)	440
BshFI	GGCC	6 cut(s)	301, 325, 373, 439, 638, 766
BshTI	ACCGGT	1 cut(s)	521
BsiEI	CGRYCG	1 cut(s)	440
BsiHKAI	GWGCWC	3 cut(s)	159, 232, 348
BsiHKCI	CYCGRG	1 cut(s)	304
BsiSI	CCGG	2 cut(s)	374, 522
BslI	CCNNNNNNNGG	5 cut(s)	170, 196, 279, 332, 446
BsmAI	GTCTC	2 cut(s)	438, 458
BsnI	GGCC	6 cut(s)	301, 325, 373, 439, 638, 766
Bso31I	GGTCTC	1 cut(s)	438
BsoBI	CYCGRG	1 cut(s)	304
Bsp1286I	GDGCHC	3 cut(s)	159, 232, 348
Bsp143I	GATC	2 cut(s)	259, 352
BspACI	CCGC	8 cut(s)	19, 171, 197, 210, 240, 286, 377, 440
BspANI	GGCC	6 cut(s)	301, 325, 373, 439, 638, 766
BspCNI	CTCAG	3 cut(s)	21, 348, 657
BspFNI	CGCG	1 cut(s)	442
BspPI	GGATC	2 cut(s)	267, 360
BspTNI	GGTCTC	1 cut(s)	438
BsrFI	RCCGGY	2 cut(s)	373, 521
BsrI	ACTGG	1 cut(s)	734
BssAI	RCCGGY	2 cut(s)	373, 521
BssECI	CCNNGG	2 cut(s)	303, 630
BssMI	GATC	2 cut(s)	259, 352
BssNI	GRCGYC	1 cut(s)	123
BssSI	CACGAG	1 cut(s)	152
BssT1I	CCWWGG	1 cut(s)	630
Bst2BI	CACGAG	1 cut(s)	152
Bst4CI	ACNGT	4 cut(s)	179, 425, 586, 675
Bst6I	CTCTTC	1 cut(s)	405
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	3 cut(s)	185, 299, 375
BstDEI	CTNAG	4 cut(s)	23, 29, 356, 665
BstF5I	GGATG	2 cut(s)	236, 469
BstFNI	CGCG	1 cut(s)	442
BstKTI	GATC	2 cut(s)	262, 355
BstMAI	GTCTC	2 cut(s)	438, 458
BstMBI	GATC	2 cut(s)	259, 352
BstMCI	CGRYCG	1 cut(s)	440
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 129, 180
BstPAI	GACNNNNGTC	1 cut(s)	426
BstSLI	GKGCMC	1 cut(s)	159
BstUI	CGCG	1 cut(s)	442
BstV1I	GCAGC	1 cut(s)	770
BstX2I	RGATCY	2 cut(s)	259, 352
BstYI	RGATCY	2 cut(s)	259, 352
BstZI	CGGCCG	1 cut(s)	437
Bsu36I	CCTNAGG	1 cut(s)	23
BsuRI	GGCC	6 cut(s)	301, 325, 373, 439, 638, 766
BtgZI	GCGATG	2 cut(s)	58, 368
BtsCI	GGATG	2 cut(s)	236, 469
Cac8I	GCNNGC	3 cut(s)	185, 299, 375
Cfr10I	RCCGGY	2 cut(s)	373, 521
Cfr13I	GGNCC	2 cut(s)	300, 764
CseI	GACGC	3 cut(s)	112, 431, 563
Csp6I	GTAC	2 cut(s)	661, 676
CspAI	ACCGGT	1 cut(s)	521
CviAII	CATG	1 cut(s)	656
CviQI	GTAC	2 cut(s)	661, 676
DdeI	CTNAG	4 cut(s)	23, 29, 356, 665
DpnI	GATC	2 cut(s)	261, 354
DpnII	GATC	2 cut(s)	259, 352
DraI	TTTAAA	1 cut(s)	537
EaeI	YGGCCR	1 cut(s)	437
EagI	CGGCCG	1 cut(s)	437
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
EciI	GGCGGA	2 cut(s)	229, 301
Ecl136II	GAGCTC	1 cut(s)	346
EclXI	CGGCCG	1 cut(s)	437
Eco130I	CCWWGG	1 cut(s)	630
Eco147I	AGGCCT	2 cut(s)	325, 638
Eco24I	GRGCYC	1 cut(s)	348
Eco31I	GGTCTC	1 cut(s)	438
Eco52I	CGGCCG	1 cut(s)	437
Eco53kI	GAGCTC	1 cut(s)	346
Eco81I	CCTNAGG	1 cut(s)	23
Eco88I	CYCGRG	1 cut(s)	304
EcoICRI	GAGCTC	1 cut(s)	346
EcoO109I	RGGNCCY	1 cut(s)	764
EcoT14I	CCWWGG	1 cut(s)	630
EcoT38I	GRGCYC	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	630
FaeI	CATG	1 cut(s)	659
FaiI	YATR	8 cut(s)	75, 225, 565, 657, 772, 774, 785, 787
FatI	CATG	1 cut(s)	655
FauI	CCCGC	1 cut(s)	190
Fnu4HI	GCNGC	5 cut(s)	19, 172, 211, 440, 759
FokI	GGATG	2 cut(s)	223, 476
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	5 cut(s)	19, 172, 211, 440, 759
FspBI	CTAG	2 cut(s)	15, 191
GluI	GCNGC	5 cut(s)	19, 172, 211, 440, 759
GsuI	CTGGAG	1 cut(s)	722
HaeIII	GGCC	6 cut(s)	301, 325, 373, 439, 638, 766
HapII	CCGG	2 cut(s)	374, 522
HgaI	GACGC	3 cut(s)	112, 431, 563
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	659
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	5 cut(s)	254, 413, 451, 479, 725
HpaII	CCGG	2 cut(s)	374, 522
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	3 cut(s)	107, 157, 589
Hpy188I	TCNGA	5 cut(s)	250, 259, 266, 357, 418
Hpy188III	TCNNGA	3 cut(s)	276, 473, 483
Hpy8I	GTNNAC	3 cut(s)	107, 157, 589
Hpy99I	CGWCG	2 cut(s)	128, 447
HpyAV	CCTTC	2 cut(s)	113, 777
HpyCH4III	ACNGT	4 cut(s)	179, 425, 586, 675
HpyCH4V	TGCA	4 cut(s)	157, 236, 685, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 129, 180
HpyF3I	CTNAG	4 cut(s)	23, 29, 356, 665
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	659
KroI	GCCGGC	1 cut(s)	373
KroNI	GCCGGC	1 cut(s)	375
Kzo9I	GATC	2 cut(s)	259, 352
LmnI	GCTCC	3 cut(s)	192, 235, 560
Lsp1109I	GCAGC	1 cut(s)	770
LweI	GCATC	2 cut(s)	245, 345
MaeI	CTAG	2 cut(s)	15, 191
MaeIII	GTNAC	1 cut(s)	649
MalI	GATC	2 cut(s)	261, 354
MboI	GATC	2 cut(s)	259, 352
MboII	GAAGA	4 cut(s)	419, 422, 503, 655
MfeI	CAATTG	1 cut(s)	214
MflI	RGATCY	2 cut(s)	259, 352
MhlI	GDGCHC	3 cut(s)	159, 232, 348
MluCI	AATT	4 cut(s)	214, 503, 680, 751
MlyI	GAGTC	2 cut(s)	422, 460
MmeI	TCCRAC	1 cut(s)	289
MroNI	GCCGGC	1 cut(s)	373
MseI	TTAA	3 cut(s)	515, 536, 597
MspA1I	CMGCKG	1 cut(s)	700
MspI	CCGG	2 cut(s)	374, 522
MunI	CAATTG	1 cut(s)	214
MvnI	CGCG	1 cut(s)	442
MwoI	GCNNNNNNNGC	3 cut(s)	40, 129, 180
NaeI	GCCGGC	1 cut(s)	375
NdeII	GATC	2 cut(s)	259, 352
NgoMIV	GCCGGC	1 cut(s)	373
NlaIII	CATG	1 cut(s)	659
NmeAIII	GCCGAG	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	649
PceI	AGGCCT	2 cut(s)	325, 638
PdiI	GCCGGC	1 cut(s)	375
PfeI	GAWTC	3 cut(s)	254, 479, 725
PinAI	ACCGGT	1 cut(s)	521
PkrI	GCNGC	5 cut(s)	20, 173, 212, 441, 760
PleI	GAGTC	2 cut(s)	421, 459
PpsI	GAGTC	2 cut(s)	421, 459
PshAI	GACNNNNGTC	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	348
PspPI	GGNCC	2 cut(s)	300, 764
PsuI	RGATCY	2 cut(s)	259, 352
PvuII	CAGCTG	1 cut(s)	700
RsaI	GTAC	2 cut(s)	662, 677
RsaNI	GTAC	2 cut(s)	661, 676
SacI	GAGCTC	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	515, 536, 597
SatI	GCNGC	5 cut(s)	19, 172, 211, 440, 759
Sau3AI	GATC	2 cut(s)	259, 352
Sau96I	GGNCC	2 cut(s)	300, 764
SchI	GAGTC	2 cut(s)	422, 460
SduI	GDGCHC	3 cut(s)	159, 232, 348
SetI	ASST	9 cut(s)	106, 139, 348, 462, 551, 594, 604, 666, 702
SfaNI	GCATC	2 cut(s)	245, 345
SmlI	CTYRAG	4 cut(s)	274, 316, 455, 550
SmoI	CTYRAG	4 cut(s)	274, 316, 455, 550
Sse9I	AATT	4 cut(s)	214, 503, 680, 751
SseBI	AGGCCT	2 cut(s)	325, 638
SsiI	CCGC	8 cut(s)	19, 171, 197, 210, 240, 286, 377, 440
SspMI	CTAG	2 cut(s)	15, 191
SstI	GAGCTC	1 cut(s)	348
StuI	AGGCCT	2 cut(s)	325, 638
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	4 cut(s)	179, 425, 586, 675
TaqI	TCGA	2 cut(s)	342, 484
TaqII	GACCGA	1 cut(s)	420
TasI	AATT	4 cut(s)	214, 503, 680, 751
TatI	WGTACW	1 cut(s)	675
TauI	GCSGC	4 cut(s)	21, 174, 213, 442
TfiI	GAWTC	3 cut(s)	254, 479, 725
Tru1I	TTAA	3 cut(s)	515, 536, 597
Tru9I	TTAA	3 cut(s)	515, 536, 597
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	1 cut(s)	758
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	6 cut(s)	267, 371, 480, 518, 624, 759
VneI	GTGCAC	1 cut(s)	155
XapI	RAATTY	1 cut(s)	503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	697
XspI	CTAG	2 cut(s)	15, 191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.