Rw2G050090

histidine-containing phosphotransfer protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
77684976 .. 77691558
6583 bp
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UTR
Exon/CDS
Intron
Rw2G050090.1

Sequence Viewer

Length: 384 bp
ATGGCTGGTGTGTCTCAGTTGCAGAAGCAGTTTGTTGACTACAAAGCCTCACTCTTTCAAGAGGGGGTTCTGGATGAACAGTTTGACCAACTTCAGGGACTACAAGATGAGAGCAACCCAAATTTTGTGGTTGAAGTGGTGTCTCTCTTCTTTCAAGATTCTGAGAGGCTTCTCAATGACCTGACCAAGACTCTGCACGCATTTGTCCATCTACGGCGTGCATACCTGTTTATTTACGACGTGCAAAATGTAAACTTACGCCGTGCATGTGTTGATTTACGACGTGCAAAATGTAAAATTATGGTGTGCGTAATCTGTGTTAAGAGTTTGTCTGAATTATTGTTACTCTCCACTCTAGAATCTGGCTTTACACTACCACTTTAG

Protein Analysis

127

Amino Acids

14.57

Weight (kDa)

5.62

Isoelectric Point (pI)

53.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 3 cut(s) 59, 134, 155
AjiI CACGTC 2 cut(s) 241, 284
Alw26I GTCTC 2 cut(s) 18, 147
ApoI RAATTY 1 cut(s) 121
BccI CCATC 1 cut(s) 216
BceAI ACGGC 2 cut(s) 230, 246
BcoDI GTCTC 2 cut(s) 18, 147
BfaI CTAG 1 cut(s) 356
BmgBI CACGTC 2 cut(s) 241, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMII CTCAG 2 cut(s) 29, 153
BsgI GTGCAG 1 cut(s) 179
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 2 cut(s) 18, 147
BsmFI GGGAC 1 cut(s) 111
BspCNI CTCAG 2 cut(s) 28, 154
Bst4CI ACNGT 1 cut(s) 81
Bst6I CTCTTC 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 198, 219
BstDEI CTNAG 2 cut(s) 15, 162
BstF5I GGATG 1 cut(s) 79
BstMAI GTCTC 2 cut(s) 18, 147
BstNSI RCATGY 1 cut(s) 270
BtrI CACGTC 2 cut(s) 241, 284
BtsCI GGATG 1 cut(s) 79
Cac8I GCNNGC 2 cut(s) 198, 219
CspCI CAANNNNNGTGG 2 cut(s) 108, 143
CviAII CATG 1 cut(s) 267
CviJI RGCY 4 cut(s) 5, 47, 169, 366
CviKI_1 RGCY 4 cut(s) 5, 47, 169, 366
DdeI CTNAG 2 cut(s) 15, 162
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 77
FaeI CATG 1 cut(s) 270
FaiI YATR 3 cut(s) 223, 268, 302
FaqI GGGAC 1 cut(s) 111
FatI CATG 1 cut(s) 266
FokI GGATG 1 cut(s) 86
FspBI CTAG 1 cut(s) 356
Hin1II CATG 1 cut(s) 270
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 3 cut(s) 158, 190, 359
Hpy166II GTNNAC 2 cut(s) 37, 253
Hpy188I TCNGA 2 cut(s) 163, 334
Hpy188III TCNNGA 4 cut(s) 59, 71, 155, 356
Hpy8I GTNNAC 2 cut(s) 37, 253
Hpy99I CGWCG 2 cut(s) 242, 285
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4IV ACGT 2 cut(s) 240, 283
HpyCH4V TGCA 6 cut(s) 22, 196, 221, 244, 266, 287
HpyF3I CTNAG 2 cut(s) 15, 162
HpySE526I ACGT 2 cut(s) 240, 283
Hsp92II CATG 1 cut(s) 270
LpnPI CCDG 5 cut(s) 56, 80, 194, 239, 348
MaeI CTAG 1 cut(s) 356
MaeII ACGT 2 cut(s) 240, 283
MaeIII GTNAC 1 cut(s) 342
MboII GAAGA 1 cut(s) 139
MluCI AATT 3 cut(s) 121, 297, 335
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 3 cut(s) 55, 58, 159
MseI TTAA 1 cut(s) 321
NlaIII CATG 1 cut(s) 270
NspI RCATGY 1 cut(s) 270
PfeI GAWTC 2 cut(s) 158, 359
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 321
SchI GAGTC 1 cut(s) 184
SetI ASST 4 cut(s) 183, 228, 243, 286
Sse9I AATT 3 cut(s) 121, 297, 335
SspMI CTAG 1 cut(s) 356
TaaI ACNGT 1 cut(s) 81
TaiI ACGT 2 cut(s) 243, 286
TasI AATT 3 cut(s) 121, 297, 335
TfiI GAWTC 2 cut(s) 158, 359
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TspDTI ATGAA 1 cut(s) 90
XapI RAATTY 1 cut(s) 121
XbaI TCTAGA 1 cut(s) 355
XceI RCATGY 1 cut(s) 270
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.