AT3G23550

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
8448273 .. 8450799
2527 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23550.1

Sequence Viewer

Length: 1410 bp
ATGGCTGATCCCACGTCCAAAGATGACCATGATGGTGAAGGAGGAAGAGACAAATCATCAACTTTTGTTCAAAAACTTATTGACGTTGAAGAAGCAAAGACTCAAATCATTTACTCTCTACCAATGATATTCACCAATCTTTTCTATTATTGTATCCCTTTAACCTCTGTGATGTTCGCTTCTCAACTCGGCCAACTCGAGCTCGCCGGTGCTACCCTAGCCAATTCTTGGGCTACCGTCACCGGTTTTGCCTTCATGACAGGGTTAAGTGGAGCACTTGAGACATTGTGTGGACAAGGCTTTGGTGCAAAAAGCTATAGAATGTTGGGGATTCATCTACAATCATCTTGCATTGTTTCATTAGTCTTCACCATTCTCATCACCATCTTATGGTTCTTCACGGAATCGGTTTTCTTACTTCTTAGACAAGATCCTAGCATCTCAAAACAAGCTGCACTCTACATGAAGTACCTAGCTCCCGGTTTACTCGCTTACGGGTTCTTACAAAACATTTTGAGATTTTGCCAAACACAATGCATCGTTACTCCGCTAGTTTTATTCTCGTTTCTTCCCTTGGTGATTAATATCGGTACTACATATGCTCTGGTGCATTTAGCTGGGCTTGGATTCATCGGTGCTCCAATAGCTACATCTATTTCATTGTGGATAGCTTTCGTTTCTCTCGGGTTTTATGTGATTTGTTCGGACAAGTTTAAGGAAACATGGACCGGATTTTCGATGGAATCATTTCATCATGTAGTACTAAACTTGACATTAAGCATCCCTTCTGCTGCTATGGTATGTTTGGAATATTGGGCGTTCGAGATTCTAGTGTTCTTAGCAGGATTGATGCGAAATCCGGAAATCACCACTTCTTTGGTAGCTATATGCGTCAACACGGAATCAATAAGTTACATGTTAACATGCGGACTTAGTGCAGCTACAAGTACGCGTGTGTCCAACGAACTTGGAGCAGGAAATGTAAAAGGCGCAAAGAAGGCGACTTCGGTCTCCGTTAAGTTGTCTTTAGTTCTAGCTCTCGGTGTAGTCATTGCTATACTTGTAGGTCATGATGCCTGGGTTGGTTTATTCAGCAATAGCCATGTGATTAAAGAGGGATTTGCATCACTAAGGTTTTTCCTTGCTGCATCTATAACACTTGATTCAATCCAAGGTGTTTTATCAGGAGTTGCGAGAGGATGCGGATGGCAGCGGTTAGCCACGGTTATAAATTTGGGAACATTCTACTTAATCGGAATGCCTATTTCAGTCCTTTGTGGTTTCAAGTTGAAGCTTCATGCCAAGGGTTTATGGATCGGTCTGATATGTGGGATGTTTTGCCAGTCCGCATCTCTTTTGCTTATGACAATTTTCCGGAAGTGGACAAAGCTGACTGCTGCCACTGTCTGA

Protein Analysis

469

Amino Acids

50.79

Weight (kDa)

8.5

Isoelectric Point (pI)

26.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 41 - 200 1.9e-29 MatE
MatE PF01554 262 - 424 6.6e-25 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000715)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1229
AccB7I CCANNNNNTGG 2 cut(s) 228, 390
AccII CGCG 1 cut(s) 952
AccIII TCCGGA 2 cut(s) 859, 1374
AciI CCGC 5 cut(s) 548, 927, 1203, 1213, 1347
AclWI GGATC 3 cut(s) 2, 425, 1322
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 1 cut(s) 1231
AfaI GTAC 4 cut(s) 470, 592, 762, 949
AfiI CCNNNNNNNGG 2 cut(s) 228, 390
AflIII ACRYGT 2 cut(s) 915, 950
AgeI ACCGGT 1 cut(s) 242
AgsI TTSAA 5 cut(s) 71, 89, 1167, 1285, 1291
AjiI CACGTC 1 cut(s) 15
AjnI CCWGG 1 cut(s) 1076
Alw21I GWGCWC 3 cut(s) 204, 277, 640
Alw26I GTCTC 3 cut(s) 42, 275, 1015
AlwI GGATC 3 cut(s) 2, 425, 1322
Ama87I CYCGRG 2 cut(s) 197, 683
Aor13HI TCCGGA 2 cut(s) 859, 1374
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 6 cut(s) 452, 791, 938, 1145, 1210, 1397
ApoI RAATTY 1 cut(s) 1231
ArsI GACNNNNNNTTYG 2 cut(s) 718, 750
AseI ATTAAT 1 cut(s) 582
AsiGI ACCGGT 1 cut(s) 242
Asp700I GAANNNNTTC 1 cut(s) 747
AspLEI GCGC 1 cut(s) 992
AspS9I GGNCC 1 cut(s) 726
AsuC2I CCSGG 1 cut(s) 480
AsuHPI GGTGA 7 cut(s) 47, 124, 232, 361, 373, 589, 859
AvaI CYCGRG 2 cut(s) 197, 683
AvaII GGWCC 1 cut(s) 726
BanII GRGCYC 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 358
Bbv12I GWGCWC 3 cut(s) 204, 277, 640
BbvI GCAGC 6 cut(s) 439, 778, 950, 1132, 1222, 1384
BccI CCATC 4 cut(s) 26, 392, 733, 1200
BciT130I CCWGG 1 cut(s) 1078
BciVI GTATCC 1 cut(s) 164
BcnI CCSGG 1 cut(s) 480
BcoDI GTCTC 3 cut(s) 42, 275, 1015
BfaI CTAG 6 cut(s) 218, 435, 473, 551, 830, 1034
BfmI CTRYAG 1 cut(s) 316
BfuI GTATCC 1 cut(s) 164
BisI GCNGC 6 cut(s) 453, 792, 939, 1146, 1211, 1398
BlsI GCNGC 6 cut(s) 454, 793, 940, 1147, 1212, 1399
BmcAI AGTACT 1 cut(s) 762
Bme1390I CCNGG 2 cut(s) 480, 1078
Bme18I GGWCC 1 cut(s) 726
BmeT110I CYCGRG 2 cut(s) 197, 683
BmgBI CACGTC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 726
BmrFI CCNGG 2 cut(s) 480, 1078
BmsI GCATC 9 cut(s) 447, 546, 789, 840, 1063, 1133, 1157, 1190, 1358
BoxI GACNNNNGTC 1 cut(s) 1007
BpiI GAAGAC 1 cut(s) 358
BpuEI CTTGAG 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 480
BsaBI GATNNNNATC 2 cut(s) 584, 1123
BsaI GGTCTC 1 cut(s) 1015
BsaJI CCNNGG 5 cut(s) 573, 1077, 1171, 1221, 1302
BsaWI WCCGGW 4 cut(s) 242, 728, 859, 1374
Bsc4I CCNNNNNNNGG 2 cut(s) 228, 390
Bse118I RCCGGY 2 cut(s) 206, 242
Bse1I ACTGG 1 cut(s) 1342
Bse3DI GCAATG 1 cut(s) 1050
Bse8I GATNNNNATC 2 cut(s) 584, 1123
BseAI TCCGGA 2 cut(s) 859, 1374
BseBI CCWGG 1 cut(s) 1078
BseDI CCNNGG 5 cut(s) 573, 1077, 1171, 1221, 1302
BseGI GGATG 4 cut(s) 780, 1205, 1211, 1338
BseJI GATNNNNATC 2 cut(s) 584, 1123
BseLI CCNNNNNNNGG 2 cut(s) 228, 390
BseMI GCAATG 1 cut(s) 1050
BseNI ACTGG 1 cut(s) 1342
BseXI GCAGC 6 cut(s) 439, 778, 950, 1132, 1222, 1384
BseYI CCCAGC 1 cut(s) 617
BsgI GTGCAG 2 cut(s) 438, 957
Bsh1236I CGCG 1 cut(s) 952
BshFI GGCC 1 cut(s) 192
BshTI ACCGGT 1 cut(s) 242
BsiHKAI GWGCWC 3 cut(s) 204, 277, 640
BsiHKCI CYCGRG 2 cut(s) 197, 683
BsiSI CCGG 6 cut(s) 207, 243, 480, 729, 860, 1375
BslI CCNNNNNNNGG 2 cut(s) 228, 390
BsmAI GTCTC 3 cut(s) 42, 275, 1015
BsmI GAATGC 1 cut(s) 1263
BsnI GGCC 1 cut(s) 192
Bso31I GGTCTC 1 cut(s) 1015
BsoBI CYCGRG 2 cut(s) 197, 683
Bsp1286I GDGCHC 3 cut(s) 204, 277, 640
Bsp13I TCCGGA 2 cut(s) 859, 1374
Bsp143I GATC 3 cut(s) 7, 430, 1314
BspACI CCGC 5 cut(s) 548, 927, 1203, 1213, 1347
BspANI GGCC 1 cut(s) 192
BspEI TCCGGA 2 cut(s) 859, 1374
BspFNI CGCG 1 cut(s) 952
BspHI TCATGA 2 cut(s) 255, 1069
BspPI GGATC 3 cut(s) 2, 425, 1322
BspTNI GGTCTC 1 cut(s) 1015
BsrDI GCAATG 1 cut(s) 1050
BsrFI RCCGGY 2 cut(s) 206, 242
BsrI ACTGG 1 cut(s) 1342
BssAI RCCGGY 2 cut(s) 206, 242
BssECI CCNNGG 5 cut(s) 573, 1077, 1171, 1221, 1302
BssMI GATC 3 cut(s) 7, 430, 1314
BssT1I CCWWGG 3 cut(s) 573, 1171, 1302
Bst2UI CCWGG 1 cut(s) 1078
Bst4CI ACNGT 3 cut(s) 238, 1225, 1405
Bst6I CTCTTC 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 4 cut(s) 422, 838, 932, 1130
BstDSI CCRYGG 1 cut(s) 1221
BstF5I GGATG 4 cut(s) 780, 1205, 1211, 1338
BstFNI CGCG 1 cut(s) 952
BstHHI GCGC 1 cut(s) 992
BstKTI GATC 3 cut(s) 10, 433, 1317
BstMAI GTCTC 3 cut(s) 42, 275, 1015
BstMBI GATC 3 cut(s) 7, 430, 1314
BstMWI GCNNNNNNNGC 3 cut(s) 218, 644, 998
BstNI CCWGG 1 cut(s) 1078
BstNSI RCATGY 2 cut(s) 919, 927
BstPAI GACNNNNGTC 1 cut(s) 1007
BstSCI CCNGG 2 cut(s) 478, 1076
BstSFI CTRYAG 1 cut(s) 316
BstUI CGCG 1 cut(s) 952
BstV1I GCAGC 6 cut(s) 439, 778, 950, 1132, 1222, 1384
BstV2I GAAGAC 1 cut(s) 358
BstX2I RGATCY 1 cut(s) 430
BstXI CCANNNNNNTGG 1 cut(s) 877
BstYI RGATCY 1 cut(s) 430
BsuI GTATCC 1 cut(s) 164
BsuRI GGCC 1 cut(s) 192
BtgI CCRYGG 1 cut(s) 1221
BtrI CACGTC 1 cut(s) 15
BtsCI GGATG 4 cut(s) 780, 1205, 1211, 1338
BtsIMutI CAGTG 1 cut(s) 1401
Cac8I GCNNGC 1 cut(s) 204
CciI TCATGA 2 cut(s) 255, 1069
CfoI GCGC 1 cut(s) 992
Cfr10I RCCGGY 2 cut(s) 206, 242
Cfr13I GGNCC 1 cut(s) 726
CseI GACGC 1 cut(s) 880
Csp6I GTAC 4 cut(s) 469, 591, 761, 948
CspAI ACCGGT 1 cut(s) 242
CviQI GTAC 4 cut(s) 469, 591, 761, 948
DdeI CTNAG 4 cut(s) 422, 838, 932, 1130
DpnI GATC 3 cut(s) 9, 432, 1316
DpnII GATC 3 cut(s) 7, 430, 1314
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 202
Eco130I CCWWGG 3 cut(s) 573, 1171, 1302
Eco24I GRGCYC 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 1015
Eco47I GGWCC 1 cut(s) 726
Eco53kI GAGCTC 1 cut(s) 202
Eco88I CYCGRG 2 cut(s) 197, 683
EcoICRI GAGCTC 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 1076
EcoT14I CCWWGG 3 cut(s) 573, 1171, 1302
EcoT22I ATGCAT 1 cut(s) 539
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 3 cut(s) 573, 1171, 1302
FalI AAGNNNNNCTT 2 cut(s) 769, 801
FauNDI CATATG 1 cut(s) 598
Fnu4HI GCNGC 6 cut(s) 453, 792, 939, 1146, 1211, 1398
FokI GGATG 4 cut(s) 767, 1212, 1218, 1345
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 6 cut(s) 453, 792, 939, 1146, 1211, 1398
FspBI CTAG 6 cut(s) 218, 435, 473, 551, 830, 1034
GlaI GCGC 1 cut(s) 991
GluI GCNGC 6 cut(s) 453, 792, 939, 1146, 1211, 1398
GsaI CCCAGC 1 cut(s) 621
HaeIII GGCC 1 cut(s) 192
HapII CCGG 6 cut(s) 207, 243, 480, 729, 860, 1375
HgaI GACGC 1 cut(s) 880
HhaI GCGC 1 cut(s) 992
Hin6I GCGC 1 cut(s) 990
HinP1I GCGC 1 cut(s) 990
HincII GTYRAC 2 cut(s) 895, 921
HindII GTYRAC 2 cut(s) 895, 921
HindIII AAGCTT 1 cut(s) 1292
HinfI GANTC 8 cut(s) 100, 331, 404, 627, 743, 826, 902, 1163
HpaI GTTAAC 1 cut(s) 921
HpaII CCGG 6 cut(s) 207, 243, 480, 729, 860, 1375
HphI GGTGA 7 cut(s) 47, 124, 232, 361, 373, 589, 859
Hpy166II GTNNAC 5 cut(s) 293, 485, 895, 921, 1383
Hpy188I TCNGA 4 cut(s) 706, 1256, 1323, 1409
Hpy188III TCNNGA 6 cut(s) 256, 823, 860, 1070, 1185, 1375
Hpy8I GTNNAC 5 cut(s) 293, 485, 895, 921, 1383
HpyAV CCTTC 4 cut(s) 32, 262, 795, 991
HpyCH4III ACNGT 3 cut(s) 238, 1225, 1405
HpyCH4IV ACGT 2 cut(s) 14, 84
HpyCH4V TGCA 8 cut(s) 308, 351, 455, 537, 610, 938, 1124, 1148
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 644, 998
HpyF3I CTNAG 4 cut(s) 422, 838, 932, 1130
HpySE526I ACGT 2 cut(s) 14, 84
HspAI GCGC 1 cut(s) 990
Kpn2I TCCGGA 2 cut(s) 859, 1374
KspAI GTTAAC 1 cut(s) 921
Kzo9I GATC 3 cut(s) 7, 430, 1314
LmnI GCTCC 4 cut(s) 272, 481, 643, 971
Lsp1109I GCAGC 6 cut(s) 439, 778, 950, 1132, 1222, 1384
LweI GCATC 9 cut(s) 447, 546, 789, 840, 1063, 1133, 1157, 1190, 1358
MaeI CTAG 6 cut(s) 218, 435, 473, 551, 830, 1034
MaeII ACGT 2 cut(s) 14, 84
MaeIII GTNAC 3 cut(s) 238, 541, 911
MalI GATC 3 cut(s) 9, 432, 1316
MboI GATC 3 cut(s) 7, 430, 1314
MboII GAAGA 5 cut(s) 57, 101, 358, 388, 560
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 3 cut(s) 204, 277, 640
MluCI AATT 3 cut(s) 223, 1231, 1368
MluI ACGCGT 1 cut(s) 950
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 984
MnlI CCTC 4 cut(s) 35, 175, 1108, 1190
Mph1103I ATGCAT 1 cut(s) 539
MroI TCCGGA 2 cut(s) 859, 1374
MroXI GAANNNNTTC 1 cut(s) 747
MseI TTAA 9 cut(s) 161, 266, 582, 714, 776, 920, 1017, 1110, 1250
MslI CAYNNNNRTG 1 cut(s) 33
MspA1I CMGCKG 1 cut(s) 1213
MspI CCGG 6 cut(s) 207, 243, 480, 729, 860, 1375
MspR9I CCNGG 2 cut(s) 480, 1078
Mva1269I GAATGC 1 cut(s) 1263
MvaI CCWGG 1 cut(s) 1078
MvnI CGCG 1 cut(s) 952
MwoI GCNNNNNNNGC 3 cut(s) 218, 644, 998
NciI CCSGG 1 cut(s) 480
NdeI CATATG 1 cut(s) 598
NdeII GATC 3 cut(s) 7, 430, 1314
NmeAIII GCCGAG 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 238
NsiI ATGCAT 1 cut(s) 539
NspI RCATGY 2 cut(s) 919, 927
PaeR7I CTCGAG 1 cut(s) 197
PagI TCATGA 2 cut(s) 255, 1069
PciI ACATGT 1 cut(s) 915
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PctI GAATGC 1 cut(s) 1263
PdmI GAANNNNTTC 1 cut(s) 747
PfeI GAWTC 7 cut(s) 331, 404, 627, 743, 826, 902, 1163
PflMI CCANNNNNTGG 2 cut(s) 228, 390
PinAI ACCGGT 1 cut(s) 242
PkrI GCNGC 6 cut(s) 454, 793, 940, 1147, 1212, 1399
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PscI ACATGT 1 cut(s) 915
PshAI GACNNNNGTC 1 cut(s) 1007
PshBI ATTAAT 1 cut(s) 582
PsiI TTATAA 1 cut(s) 1229
Psp124BI GAGCTC 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 1076
PspFI CCCAGC 1 cut(s) 617
PspGI CCWGG 1 cut(s) 1076
PspPI GGNCC 1 cut(s) 726
PspXI VCTCGAGB 1 cut(s) 197
PsuI RGATCY 1 cut(s) 430
RsaI GTAC 4 cut(s) 470, 592, 762, 949
RsaNI GTAC 4 cut(s) 469, 591, 761, 948
RseI CAYNNNNRTG 1 cut(s) 33
SacI GAGCTC 1 cut(s) 204
SaqAI TTAA 9 cut(s) 161, 266, 582, 714, 776, 920, 1017, 1110, 1250
SatI GCNGC 6 cut(s) 453, 792, 939, 1146, 1211, 1398
Sau3AI GATC 3 cut(s) 7, 430, 1314
Sau96I GGNCC 1 cut(s) 726
ScaI AGTACT 1 cut(s) 762
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 2 cut(s) 480, 1078
SduI GDGCHC 3 cut(s) 204, 277, 640
SfaNI GCATC 9 cut(s) 447, 546, 789, 840, 1063, 1133, 1157, 1190, 1358
SfcI CTRYAG 1 cut(s) 316
Sfr274I CTCGAG 1 cut(s) 197
SgrAI CRCCGGYG 1 cut(s) 206
SinI GGWCC 1 cut(s) 726
SlaI CTCGAG 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 33
SmlI CTYRAG 2 cut(s) 197, 278
SmoI CTYRAG 2 cut(s) 197, 278
Sse9I AATT 3 cut(s) 223, 1231, 1368
SsiI CCGC 5 cut(s) 548, 927, 1203, 1213, 1347
SspI AATATT 1 cut(s) 812
SspMI CTAG 6 cut(s) 218, 435, 473, 551, 830, 1034
SstI GAGCTC 1 cut(s) 204
StyD4I CCNGG 2 cut(s) 478, 1076
StyI CCWWGG 3 cut(s) 573, 1171, 1302
TaaI ACNGT 3 cut(s) 238, 1225, 1405
TaiI ACGT 2 cut(s) 17, 87
TaqI TCGA 3 cut(s) 198, 737, 822
TaqII GACCGA 2 cut(s) 997, 1307
TasI AATT 3 cut(s) 223, 1231, 1368
TatI WGTACW 1 cut(s) 760
TfiI GAWTC 7 cut(s) 331, 404, 627, 743, 826, 902, 1163
Tru1I TTAA 9 cut(s) 161, 266, 582, 714, 776, 920, 1017, 1110, 1250
Tru9I TTAA 9 cut(s) 161, 266, 582, 714, 776, 920, 1017, 1110, 1250
TscAI CASTG 1 cut(s) 1408
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 6 cut(s) 452, 791, 938, 1145, 1210, 1397
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 8 cut(s) 244, 323, 348, 479, 619, 648, 740, 1286
TspGWI ACGGA 3 cut(s) 416, 914, 1003
TspRI CASTG 1 cut(s) 1408
Van91I CCANNNNNTGG 2 cut(s) 228, 390
VpaK11BI GGWCC 1 cut(s) 726
VspI ATTAAT 1 cut(s) 582
XapI RAATTY 1 cut(s) 1231
XceI RCATGY 2 cut(s) 919, 927
XhoI CTCGAG 1 cut(s) 197
XmnI GAANNNNTTC 1 cut(s) 747
XspI CTAG 6 cut(s) 218, 435, 473, 551, 830, 1034
ZrmI AGTACT 1 cut(s) 762
Zsp2I ATGCAT 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.