Prupe.4G206700_v2.0.a1

MATE efflux family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000715
Physical Location & Seq
Reverse (-)
12892453 .. 12896147
3695 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G206700.1

Sequence Viewer

Length: 1293 bp
ATGGAGGCAGGCGGCCATGGCAATCAACAAGGAAGAAAAGGGGGGTGGTGGAATAAACTGTTGGACATGGAGGAGGCCAAGAACCAGGTCTTGTTTTTCTTGCCAATGATTCTTACCAATGTTTGCTATTACACGATCCCCTTGATATCTGTCATGTTTGCTGGTCACCTTGGTGAGCTTGAGCTTGCTGGTGCCACATTTGCCAATTCATGGGCCACCATTACTGGTTTCGCTCTCATGGTTGGGTTAAGTGGAGCTCTTGAGACACTGTGTGGGCAAGGATTGGAGCAAATCTGGTTCTACACAGAACCCATACTTATCTTACTTCATCAAGATCCTCAAATTTCAAAATCTGCTGCTCTTTATATGAAATTTCTGATTCCGAGATTATTTGCATACGGCTTCATGCATAACATATTGAGATTTCTTCAGACACAATCCGTTGTAATGCCGTTGGTCTTCTTCTCACTGATCCCAGTGGTTATTCATATTTGTGTTGCATATGCTTTGGTACATTGGACAGCTCTTGGTTTCAAGGGAGCTCCCCTAGCATGTTCAATTTCGATATGGATAGCGATGCTAATGCTGGCCATGTATGTTATTTTTGCAAAGAAGTTTGAGCTTACATGGGAAGGATTTTCGTTAGAATCGTTCCATTATTACCGGGCTTTTGAGATTCTGGTGGTATTGGCAGGACTGATGCCAAACGCAGAACAAACCACTTCACTAATTGCAATGTGTGTGAATACAGAAGCAATTGCATACATGATTACATATGGCCTCAGTGCTGCTGCAAGCACAAGGGTGTCAAATGAATTAGGAGCAGGCAATCCTGACAAAGCCAAGAAGGCAATGGCTGTGACTCTTAAGCTCTCTGTGCTTCTTGGTCTCCTTGTTGTTCTGGCTCTAGCATTTGGTCACAATATATGGGCTAGCTTATTCAGTGACAGCAGTGCAATAATCAAGCTTTTTGCTTCTATGACACCATTTCTTGGAATTTCAATAATGGCTGATTCTGTGCAAGGTGTCTTGTCAGGTGTGGCCAGAGGATGTGGCTTTCAGCACTTGGCTATGTATGTAAATTTGGGTACATTCTATTTGGTTGGCATGACAGTTGCGTGTGTTGTTGGATTTAAGTTGAAACTATATGCTAAGGGATTGTGGATTGGCTTAATCTGTGGTCTTTGCTGTCAAGCCGCCCTACTTTTGCTGGTTACACTGCGGACAAAATGGACTCAATTGGATGTGCCTCATAATGGAGATGCAGTTTTGGTGAAGGTCGGGCAAAAGTAA

Protein Analysis

431

Amino Acids

46.96

Weight (kDa)

8.44

Isoelectric Point (pI)

31.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000715)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23550 AT3G23560 AT3G23560
fragaria_vesca FvH4_1g15630 FvH4_1g15630 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19720 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_5g31740 FvH4_7g19991
malus_domestica MD03G1230300.v1.1 MD11G1250700.v1.1 MD11G1251300.v1.1 MD11G1251400.v1.1 MD11G1251500.v1.1 MD12G1088700.v1.1
prunus_persica Prupe.4G177700_v2.0.a1 Prupe.4G177700_v2.0.a1 Prupe.4G177900_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G206700_v2.0.a1
pyrus_communis pycom03g17780 pycom10g06980 pycom11g22170 pycom11g22270
rosa_chinensis RchiOBHm_Chr5g0033011 RchiOBHm_Chr5g0033061
rosa_laevigata RLG00000033443 RLG00000033445
rosa_multiflora Rmu_sc0000986.1_g000015
rosa_roxburghii Rroxscaffold_1G00046880 Rroxscaffold_1G00046890 Rroxscaffold_1G00046990 Rroxscaffold_1G00047000 Rroxscaffold_1G00047040
rosa_rugosa Rorug05G0135000 Rorug05G0135100 Rorug05G0135200 Rorug05G0135500 Rorug05G0135600 Rorug05G0135700 Rorug05G0135800
rosa_samantha Rh5AG227700 Rh5AG228200 Rh5BG229300 Rh5BG229400 Rh5CG256700 Rh5CG257200 Rh5DG233900 Rh5DG234100
rosa_wichuraiana Rw5G020860 Rw5G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AccB7I CCANNNNNTGG 2 cut(s) 210, 992
AciI CCGC 3 cut(s) 12, 1197, 1222
AclWI GGATC 3 cut(s) 130, 329, 466
AcoI YGGCCR 3 cut(s) 13, 588, 1041
AcsI RAATTY 4 cut(s) 342, 371, 996, 1081
AcuI CTGAAG 1 cut(s) 413
AdeI CACNNNGTG 1 cut(s) 272
AfaI GTAC 2 cut(s) 513, 1090
AfiI CCNNNNNNNGG 3 cut(s) 210, 992, 1256
AflII CTTAAG 1 cut(s) 866
AgsI TTSAA 5 cut(s) 348, 535, 558, 1002, 1141
AjnI CCWGG 1 cut(s) 84
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AleI CACNNNNGTG 2 cut(s) 171, 803
AluBI AGCT 9 cut(s) 178, 184, 257, 524, 542, 622, 871, 936, 967
AluI AGCT 9 cut(s) 178, 184, 257, 524, 542, 622, 871, 936, 967
Alw21I GWGCWC 2 cut(s) 259, 544
Alw26I GTCTC 2 cut(s) 257, 893
AlwI GGATC 3 cut(s) 130, 329, 466
AoxI GGCC 6 cut(s) 13, 75, 213, 588, 778, 1041
ApeKI GCWGC 3 cut(s) 356, 788, 791
ApoI RAATTY 4 cut(s) 342, 371, 996, 1081
AspS9I GGNCC 1 cut(s) 213
AsuC2I CCSGG 1 cut(s) 665
AsuHPI GGTGA 3 cut(s) 158, 185, 1285
AsuNHI GCTAGC 1 cut(s) 932
BalI TGGCCA 2 cut(s) 590, 1043
BanI GGYRCC 1 cut(s) 191
BanII GRGCYC 2 cut(s) 259, 544
BbsI GAAGAC 1 cut(s) 451
Bbv12I GWGCWC 2 cut(s) 259, 544
BbvI GCAGC 3 cut(s) 343, 775, 778
BceAI ACGGC 2 cut(s) 415, 436
BcgI CGANNNNNNTGC 2 cut(s) 565, 599
BciT130I CCWGG 1 cut(s) 86
BcnI CCSGG 1 cut(s) 665
BcoDI GTCTC 2 cut(s) 257, 893
BfaI CTAG 3 cut(s) 548, 908, 933
BfrI CTTAAG 1 cut(s) 866
BglI GCCNNNNNGGC 1 cut(s) 848
BisI GCNGC 5 cut(s) 13, 357, 789, 792, 1197
BlsI GCNGC 5 cut(s) 14, 358, 790, 793, 1198
Bme1390I CCNGG 2 cut(s) 86, 665
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 2 cut(s) 86, 665
BmrI ACTGGG 1 cut(s) 470
BmsI GCATC 3 cut(s) 567, 690, 1252
BmtI GCTAGC 1 cut(s) 936
BmuI ACTGGG 1 cut(s) 470
BpiI GAAGAC 1 cut(s) 451
Bpu10I CCTNAGC 1 cut(s) 1152
BpuEI CTTGAG 2 cut(s) 200, 281
BpuMI CCSGG 1 cut(s) 665
BsaI GGTCTC 1 cut(s) 893
BsaJI CCNNGG 2 cut(s) 16, 169
BsaXI ACNNNNNCTCC 2 cut(s) 1251, 1281
Bsc4I CCNNNNNNNGG 3 cut(s) 210, 992, 1256
Bse1I ACTGG 2 cut(s) 229, 476
Bse3DI GCAATG 2 cut(s) 741, 858
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 16, 169
BseGI GGATG 2 cut(s) 1055, 1249
BseLI CCNNNNNNNGG 3 cut(s) 210, 992, 1256
BseMI GCAATG 2 cut(s) 741, 858
BseMII CTCAG 1 cut(s) 796
BseNI ACTGG 2 cut(s) 229, 476
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 3 cut(s) 343, 775, 778
BshFI GGCC 6 cut(s) 15, 77, 215, 590, 780, 1043
BshNI GGYRCC 1 cut(s) 191
BsiHKAI GWGCWC 2 cut(s) 259, 544
BsiSI CCGG 1 cut(s) 664
BslI CCNNNNNNNGG 3 cut(s) 210, 992, 1256
BsmAI GTCTC 2 cut(s) 257, 893
BsnI GGCC 6 cut(s) 15, 77, 215, 590, 780, 1043
Bso31I GGTCTC 1 cut(s) 893
Bsp1286I GDGCHC 2 cut(s) 259, 544
Bsp143I GATC 3 cut(s) 135, 334, 471
Bsp19I CCATGG 1 cut(s) 16
BspACI CCGC 3 cut(s) 12, 1197, 1222
BspANI GGCC 6 cut(s) 15, 77, 215, 590, 780, 1043
BspCNI CTCAG 1 cut(s) 795
BspLI GGNNCC 1 cut(s) 193
BspOI GCTAGC 1 cut(s) 936
BspPI GGATC 3 cut(s) 130, 329, 466
BspT107I GGYRCC 1 cut(s) 191
BspTI CTTAAG 1 cut(s) 866
BspTNI GGTCTC 1 cut(s) 893
BsrDI GCAATG 2 cut(s) 741, 858
BsrI ACTGG 2 cut(s) 229, 476
BssECI CCNNGG 2 cut(s) 16, 169
BssMI GATC 3 cut(s) 135, 334, 471
BssT1I CCWWGG 2 cut(s) 16, 169
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 3 cut(s) 60, 270, 1114
BstAFI CTTAAG 1 cut(s) 866
BstC8I GCNNGC 6 cut(s) 10, 186, 588, 796, 826, 934
BstDEI CTNAG 2 cut(s) 782, 1152
BstDSI CCRYGG 1 cut(s) 16
BstEII GGTNACC 1 cut(s) 164
BstF5I GGATG 2 cut(s) 1055, 1249
BstKTI GATC 3 cut(s) 138, 337, 474
BstMAI GTCTC 2 cut(s) 257, 893
BstMBI GATC 3 cut(s) 135, 334, 471
BstMWI GCNNNNNNNGC 5 cut(s) 18, 200, 548, 848, 877
BstNI CCWGG 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 555
BstPI GGTNACC 1 cut(s) 164
BstSCI CCNGG 2 cut(s) 84, 663
BstV1I GCAGC 3 cut(s) 343, 775, 778
BstV2I GAAGAC 1 cut(s) 451
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BsuRI GGCC 6 cut(s) 15, 77, 215, 590, 780, 1043
BtgI CCRYGG 1 cut(s) 16
BtgZI GCGATG 1 cut(s) 590
BtsCI GGATG 2 cut(s) 1055, 1249
BtsI GCAGTG 2 cut(s) 958, 1217
BtsIMutI CAGTG 7 cut(s) 266, 467, 483, 790, 949, 958, 1217
Cac8I GCNNGC 6 cut(s) 10, 186, 588, 796, 826, 934
Cfr13I GGNCC 1 cut(s) 213
CsiI ACCWGGT 1 cut(s) 84
Csp6I GTAC 2 cut(s) 512, 1089
CviQI GTAC 2 cut(s) 512, 1089
DdeI CTNAG 2 cut(s) 782, 1152
DpnI GATC 3 cut(s) 137, 336, 473
DpnII GATC 3 cut(s) 135, 334, 471
DraIII CACNNNGTG 1 cut(s) 272
EaeI YGGCCR 3 cut(s) 13, 588, 1041
Ecl136II GAGCTC 2 cut(s) 257, 542
Eco130I CCWWGG 2 cut(s) 16, 169
Eco24I GRGCYC 2 cut(s) 259, 544
Eco31I GGTCTC 1 cut(s) 893
Eco32I GATATC 1 cut(s) 147
Eco53kI GAGCTC 2 cut(s) 257, 542
Eco57I CTGAAG 1 cut(s) 413
Eco91I GGTNACC 1 cut(s) 164
EcoICRI GAGCTC 2 cut(s) 257, 542
EcoO65I GGTNACC 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 84
EcoRV GATATC 1 cut(s) 147
EcoT14I CCWWGG 2 cut(s) 16, 169
EcoT22I ATGCAT 1 cut(s) 411
EcoT38I GRGCYC 2 cut(s) 259, 544
ErhI CCWWGG 2 cut(s) 16, 169
FauNDI CATATG 2 cut(s) 502, 775
Fnu4HI GCNGC 5 cut(s) 13, 357, 789, 792, 1197
FokI GGATG 2 cut(s) 1062, 1256
FriOI GRGCYC 2 cut(s) 259, 544
Fsp4HI GCNGC 5 cut(s) 13, 357, 789, 792, 1197
FspBI CTAG 3 cut(s) 548, 908, 933
GluI GCNGC 5 cut(s) 13, 357, 789, 792, 1197
HaeIII GGCC 6 cut(s) 15, 77, 215, 590, 780, 1043
HapII CCGG 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 965
HinfI GANTC 7 cut(s) 109, 379, 647, 676, 862, 1013, 1234
HpaII CCGG 1 cut(s) 664
HphI GGTGA 3 cut(s) 158, 185, 1285
Hpy188I TCNGA 3 cut(s) 378, 384, 432
Hpy188III TCNNGA 3 cut(s) 260, 332, 833
HpyAV CCTTC 3 cut(s) 626, 841, 1270
HpyCH4III ACNGT 3 cut(s) 60, 270, 1114
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 200, 548, 848, 877
HpyF3I CTNAG 2 cut(s) 782, 1152
Kzo9I GATC 3 cut(s) 135, 334, 471
LmnI GCTCC 5 cut(s) 254, 286, 539, 547, 821
Lsp1109I GCAGC 3 cut(s) 343, 775, 778
LweI GCATC 3 cut(s) 567, 690, 1252
MabI ACCWGGT 1 cut(s) 84
MaeI CTAG 3 cut(s) 548, 908, 933
MaeIII GTNAC 5 cut(s) 164, 859, 917, 944, 1213
MalI GATC 3 cut(s) 137, 336, 473
MboI GATC 3 cut(s) 135, 334, 471
MboII GAAGA 4 cut(s) 45, 419, 451, 454
MfeI CAATTG 2 cut(s) 756, 1238
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 2 cut(s) 259, 544
MlsI TGGCCA 2 cut(s) 590, 1043
MluNI TGGCCA 2 cut(s) 590, 1043
MlyI GAGTC 2 cut(s) 856, 1228
MmeI TCCRAC 2 cut(s) 42, 1108
MnlI CCTC 6 cut(s) 64, 67, 348, 791, 1040, 1260
Mox20I TGGCCA 2 cut(s) 590, 1043
Mph1103I ATGCAT 1 cut(s) 411
MscI TGGCCA 2 cut(s) 590, 1043
MseI TTAA 4 cut(s) 248, 867, 1134, 1172
MslI CAYNNNNRTG 3 cut(s) 171, 492, 803
Msp20I TGGCCA 2 cut(s) 590, 1043
MspCI CTTAAG 1 cut(s) 866
MspI CCGG 1 cut(s) 664
MspR9I CCNGG 2 cut(s) 86, 665
MunI CAATTG 2 cut(s) 756, 1238
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 5 cut(s) 18, 200, 548, 848, 877
NciI CCSGG 1 cut(s) 665
NcoI CCATGG 1 cut(s) 16
NdeI CATATG 2 cut(s) 502, 775
NdeII GATC 3 cut(s) 135, 334, 471
NheI GCTAGC 1 cut(s) 932
NlaIV GGNNCC 1 cut(s) 193
NmuCI GTSAC 4 cut(s) 164, 859, 917, 944
NsiI ATGCAT 1 cut(s) 411
NspI RCATGY 1 cut(s) 555
OliI CACNNNNGTG 2 cut(s) 171, 803
PcsI WCGNNNNNNNCGW 1 cut(s) 647
PfeI GAWTC 5 cut(s) 109, 379, 647, 676, 1013
PflMI CCANNNNNTGG 2 cut(s) 210, 992
PkrI GCNGC 5 cut(s) 14, 358, 790, 793, 1198
PleI GAGTC 2 cut(s) 856, 1228
PpsI GAGTC 2 cut(s) 856, 1228
Psp124BI GAGCTC 2 cut(s) 259, 544
Psp6I CCWGG 1 cut(s) 84
PspEI GGTNACC 1 cut(s) 164
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 1 cut(s) 213
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 2 cut(s) 513, 1090
RsaNI GTAC 2 cut(s) 512, 1089
RseI CAYNNNNRTG 3 cut(s) 171, 492, 803
SacI GAGCTC 2 cut(s) 259, 544
SaqAI TTAA 4 cut(s) 248, 867, 1134, 1172
SatI GCNGC 5 cut(s) 13, 357, 789, 792, 1197
Sau3AI GATC 3 cut(s) 135, 334, 471
Sau96I GGNCC 1 cut(s) 213
SchI GAGTC 2 cut(s) 856, 1228
ScrFI CCNGG 2 cut(s) 86, 665
SduI GDGCHC 2 cut(s) 259, 544
SexAI ACCWGGT 1 cut(s) 84
SfaNI GCATC 3 cut(s) 567, 690, 1252
SmiMI CAYNNNNRTG 3 cut(s) 171, 492, 803
SmlI CTYRAG 3 cut(s) 179, 260, 866
SmoI CTYRAG 3 cut(s) 179, 260, 866
SsiI CCGC 3 cut(s) 12, 1197, 1222
SspMI CTAG 3 cut(s) 548, 908, 933
SstI GAGCTC 2 cut(s) 259, 544
StyD4I CCNGG 2 cut(s) 84, 663
StyI CCWWGG 2 cut(s) 16, 169
TaaI ACNGT 3 cut(s) 60, 270, 1114
TaqI TCGA 1 cut(s) 563
TauI GCSGC 2 cut(s) 15, 1199
TfiI GAWTC 5 cut(s) 109, 379, 647, 676, 1013
Tru1I TTAA 4 cut(s) 248, 867, 1134, 1172
Tru9I TTAA 4 cut(s) 248, 867, 1134, 1172
TscAI CASTG 7 cut(s) 273, 474, 483, 790, 949, 958, 1224
TseFI GTSAC 4 cut(s) 164, 859, 917, 944
TseI GCWGC 3 cut(s) 356, 788, 791
Tsp45I GTSAC 4 cut(s) 164, 859, 917, 944
TspDTI ATGAA 6 cut(s) 198, 317, 383, 394, 476, 828
TspGWI ACGGA 1 cut(s) 430
TspRI CASTG 7 cut(s) 273, 474, 483, 790, 949, 958, 1224
Van91I CCANNNNNTGG 2 cut(s) 210, 992
Vha464I CTTAAG 1 cut(s) 866
XapI RAATTY 4 cut(s) 342, 371, 996, 1081
XceI RCATGY 1 cut(s) 555
XcmI CCANNNNNNNNNTGG 1 cut(s) 850
XspI CTAG 3 cut(s) 548, 908, 933
Zsp2I ATGCAT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.