Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000715

Physical Location & Seq

Genomic Coordinates Reverse (-)

10925156 .. 10925572

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1088700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGACAGACTCTACCGCTGCATTAATCTCATCAAATCCTGAACAAGGAACTGAGGCTAGTTTCCATGAGGTCAAGAACCAGGTCTTAATCGCATTACCCTTCGTTGTGACCAATCTATGCTTTCACCTAACTCGTCTCATATCTATAATGTTTGCCGGGCACCTTGGTGAGCTTGAGCTTGCCGGAGCCACACTGGCTAACGTGTGGGCAACCACTACTGGTTTTGTTATGGTTGGCTTAAGTGGAGCTCTAGAAACCTTGTGCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009636 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043207 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

90

Amino Acids

9.35

Weight (kDa)

4.76

Isoelectric Point (pI)

12.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	33 - 89	3.5e-09	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23550 AT3G23560 AT3G23560
fragaria_vesca	FvH4_1g15630 FvH4_1g15630 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19720 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_5g31740 FvH4_7g19991
malus_domestica	MD03G1230300.v1.1 MD11G1250700.v1.1 MD11G1251300.v1.1 MD11G1251400.v1.1 MD11G1251500.v1.1 MD12G1088700.v1.1
prunus_persica	Prupe.4G177700_v2.0.a1 Prupe.4G177700_v2.0.a1 Prupe.4G177900_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G206700_v2.0.a1
pyrus_communis	pycom03g17780 pycom10g06980 pycom11g22170 pycom11g22270
rosa_chinensis	RchiOBHm_Chr5g0033011 RchiOBHm_Chr5g0033061
rosa_laevigata	RLG00000033443 RLG00000033445
rosa_multiflora	Rmu_sc0000986.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046880 Rroxscaffold_1G00046890 Rroxscaffold_1G00046990 Rroxscaffold_1G00047000 Rroxscaffold_1G00047040
rosa_rugosa	Rorug05G0135000 Rorug05G0135100 Rorug05G0135200 Rorug05G0135500 Rorug05G0135600 Rorug05G0135700 Rorug05G0135800
rosa_samantha	Rh5AG227700 Rh5AG228200 Rh5BG229300 Rh5BG229400 Rh5CG256700 Rh5CG257200 Rh5DG233900 Rh5DG234100
rosa_wichuraiana	Rw5G020860 Rw5G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	159
AciI	CCGC	2 cut(s)	15, 264
AfiI	CCNNNNNNNGG	1 cut(s)	44
AflII	CTTAAG	1 cut(s)	238
AflIII	ACRYGT	1 cut(s)	201
AjnI	CCWGG	1 cut(s)	78
AleI	CACNNNNGTG	1 cut(s)	165
AluBI	AGCT	3 cut(s)	172, 178, 248
AluI	AGCT	3 cut(s)	172, 178, 248
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	17
AseI	ATTAAT	1 cut(s)	23
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	116, 179
BaeGI	GKGCMC	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	4
BciT130I	CCWGG	1 cut(s)	80
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	3 cut(s)	57, 251, 268
BfrI	CTTAAG	1 cut(s)	238
BglI	GCCNNNNNGGC	1 cut(s)	194
BisI	GCNGC	2 cut(s)	18, 265
BlsI	GCNGC	2 cut(s)	19, 266
Bme1390I	CCNGG	2 cut(s)	80, 157
BmiI	GGNNCC	2 cut(s)	161, 187
BmrFI	CCNGG	2 cut(s)	80, 157
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	2 cut(s)	198, 223
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	2 cut(s)	198, 223
BseSI	GKGCMC	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	4
BshNI	GGYRCC	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	2 cut(s)	156, 183
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	140
BsmBI	CGTCTC	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	162, 250
BspACI	CCGC	2 cut(s)	15, 264
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	161, 187
BspT107I	GGYRCC	1 cut(s)	159
BspTI	CTTAAG	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	198, 223
BssECI	CCNNGG	1 cut(s)	163
BssT1I	CCWWGG	1 cut(s)	163
Bst2UI	CCWGG	1 cut(s)	80
BstAFI	CTTAAG	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	51
BstENI	CCTNNNNNAGG	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	2 cut(s)	78, 155
BstSLI	GKGCMC	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	4
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	180
CsiI	ACCWGGT	1 cut(s)	78
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	8 cut(s)	56, 172, 178, 188, 197, 237, 248, 267
CviKI_1	RGCY	8 cut(s)	56, 172, 178, 188, 197, 237, 248, 267
DdeI	CTNAG	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	248
EcoNI	CCTNNNNNAGG	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	163
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	1 cut(s)	68
FaiI	YATR	5 cut(s)	66, 118, 140, 146, 230
FatI	CATG	1 cut(s)	64
Fnu4HI	GCNGC	2 cut(s)	18, 265
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	2 cut(s)	18, 265
FspBI	CTAG	3 cut(s)	57, 251, 268
GluI	GCNGC	2 cut(s)	18, 265
HapII	CCGG	2 cut(s)	156, 183
Hin1II	CATG	1 cut(s)	68
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	2 cut(s)	156, 183
HphI	GGTGA	2 cut(s)	116, 179
Hpy188III	TCNNGA	3 cut(s)	38, 73, 251
HpyAV	CCTTC	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	68
LmnI	GCTCC	2 cut(s)	185, 245
LpnPI	CCDG	7 cut(s)	51, 65, 92, 169, 179, 196, 204
Lsp1109I	GCAGC	1 cut(s)	4
MabI	ACCWGGT	1 cut(s)	78
MaeI	CTAG	3 cut(s)	57, 251, 268
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	106
MhlI	GDGCHC	2 cut(s)	162, 250
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	2 cut(s)	46, 61
MseI	TTAA	3 cut(s)	23, 86, 239
MslI	CAYNNNNRTG	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	17
MspCI	CTTAAG	1 cut(s)	238
MspI	CCGG	2 cut(s)	156, 183
MspR9I	CCNGG	2 cut(s)	80, 157
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	157
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	2 cut(s)	161, 187
NmuCI	GTSAC	1 cut(s)	106
OliI	CACNNNNGTG	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	19, 266
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PshBI	ATTAAT	1 cut(s)	23
Psp124BI	GAGCTC	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	2 cut(s)	161, 187
RseI	CAYNNNNRTG	1 cut(s)	165
SacI	GAGCTC	1 cut(s)	250
SaqAI	TTAA	3 cut(s)	23, 86, 239
SatI	GCNGC	2 cut(s)	18, 265
SchI	GAGTC	1 cut(s)	2
ScrFI	CCNGG	2 cut(s)	80, 157
SduI	GDGCHC	2 cut(s)	162, 250
SetI	ASST	9 cut(s)	72, 84, 129, 165, 174, 180, 204, 250, 260
SexAI	ACCWGGT	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	2 cut(s)	173, 238
SmoI	CTYRAG	2 cut(s)	173, 238
SsiI	CCGC	2 cut(s)	15, 264
SspMI	CTAG	3 cut(s)	57, 251, 268
SstI	GAGCTC	1 cut(s)	250
StyD4I	CCNGG	2 cut(s)	78, 155
StyI	CCWWGG	1 cut(s)	163
TaiI	ACGT	1 cut(s)	204
TauI	GCSGC	1 cut(s)	267
Tru1I	TTAA	3 cut(s)	23, 86, 239
Tru9I	TTAA	3 cut(s)	23, 86, 239
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	106
TspRI	CASTG	1 cut(s)	198
Vha464I	CTTAAG	1 cut(s)	238
VspI	ATTAAT	1 cut(s)	23
XagI	CCTNNNNNAGG	1 cut(s)	42
XbaI	TCTAGA	1 cut(s)	250
XspI	CTAG	3 cut(s)	57, 251, 268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.