Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000715

Physical Location & Seq

Genomic Coordinates Forward (+)

66478556 .. 66481160

Gene Structure 2605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGATTCCTGATGTGAGTGAGATTCCAGCCTTTGCTTTGGCAAGTGTCAACGAAGAAGGCCATGGAGAAGAAACATCAACAGGAACATGTTGTAAGATACTAGTAGACGTTGAGGAGGCTAAGGAACAGGTTTTGTTTTCGTTGCCAGCAATTCTCACCAATTTATTCTTCTCCTTGATCACATTGGTGTCTGTCATGTTTGCTGGCCACCTTGGTGAGCTTCCCTTAGCTGGTGCAACCTTGGCCAATTCATGGGCCAATGTTACAGGTTTTGCATTTGTGGTTGGATTGAGTGGAGCTCTTGAGACACTTTGTGGGCAAGGGTTTGGTGCAAAGTCATATAGAATGTTGGGGATTTATCTGCAAGCTTCTTGTATCATATCTTTCCTATTCTGCTCCATCATATCTGTAATTTGGTTGTATACAGAACCAATACTTATTTTCCTCCATCAAGATCCTCAAATTGCAAAATCTGCAGCTCTTTTCTTGAAATTTCTAATTCCCGGATTATTTGCATATGGCCTCCTGCAAAACATCTTGAGATTTCTTCAGACACAATCCATCTATGTCATGCCAATGGTCTTCTCCATGATCTCCATTGTAATTCATATTGCCATCACTTATGGTTTAGTACATTGGACGTCTCTTGGTTTCAAGGGAGCTCCACTAGCAGCTTCAGTTACGCTGTGGATTTCGGTTCTTATGTTGGCCTTCCATGTTAGTTTTGCAAAGAATTTTGAGCATACATGGGAAGGATTTTCATTAGAACCATTCCAATATATCATGACTGGTTTGAAACTTGCCCTTCCCTCTGCAACAATGGAATGGATTGATGCCAAACTCGACGAGAACAACTTCACTACTTGCAATGTGGTCAGCTTCAATAACATTTTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009636 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043207 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

299

Amino Acids

32.83

Weight (kDa)

5.04

Isoelectric Point (pI)

25.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	49 - 208	4e-35	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23550 AT3G23560 AT3G23560
fragaria_vesca	FvH4_1g15630 FvH4_1g15630 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19720 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_5g31740 FvH4_7g19991
malus_domestica	MD03G1230300.v1.1 MD11G1250700.v1.1 MD11G1251300.v1.1 MD11G1251400.v1.1 MD11G1251500.v1.1 MD12G1088700.v1.1
prunus_persica	Prupe.4G177700_v2.0.a1 Prupe.4G177700_v2.0.a1 Prupe.4G177900_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G206700_v2.0.a1
pyrus_communis	pycom03g17780 pycom10g06980 pycom11g22170 pycom11g22270
rosa_chinensis	RchiOBHm_Chr5g0033011 RchiOBHm_Chr5g0033061
rosa_laevigata	RLG00000033443 RLG00000033445
rosa_multiflora	Rmu_sc0000986.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046880 Rroxscaffold_1G00046890 Rroxscaffold_1G00046990 Rroxscaffold_1G00047000 Rroxscaffold_1G00047040
rosa_rugosa	Rorug05G0135000 Rorug05G0135100 Rorug05G0135200 Rorug05G0135500 Rorug05G0135600 Rorug05G0135700 Rorug05G0135800
rosa_samantha	Rh5AG227700 Rh5AG228200 Rh5BG229300 Rh5BG229400 Rh5CG256700 Rh5CG257200 Rh5DG233900 Rh5DG234100
rosa_wichuraiana	Rw5G020860 Rw5G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	644
AccB7I	CCANNNNNTGG	1 cut(s)	252
AccI	GTMKAC	2 cut(s)	105, 422
AclWI	GGATC	1 cut(s)	449
AcoI	YGGCCR	2 cut(s)	205, 243
AcsI	RAATTY	2 cut(s)	491, 733
AcuI	CTGAAG	2 cut(s)	533, 660
AcyI	GRCGYC	1 cut(s)	641
AdeI	CACNNNGTG	1 cut(s)	314
AfaI	GTAC	1 cut(s)	633
AfiI	CCNNNNNNNGG	2 cut(s)	230, 252
AflIII	ACRYGT	1 cut(s)	86
AgsI	TTSAA	4 cut(s)	490, 655, 796, 883
AhlI	ACTAGT	1 cut(s)	100
AjuI	GAANNNNNNNTTGG	2 cut(s)	152, 184
AleI	CACNNNNGTG	2 cut(s)	185, 213
AluBI	AGCT	8 cut(s)	220, 230, 299, 368, 479, 662, 674, 879
AluI	AGCT	8 cut(s)	220, 230, 299, 368, 479, 662, 674, 879
Alw21I	GWGCWC	2 cut(s)	301, 664
Alw26I	GTCTC	2 cut(s)	299, 648
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	6 cut(s)	58, 205, 243, 255, 520, 708
ApeKI	GCWGC	2 cut(s)	476, 671
ApoI	RAATTY	2 cut(s)	491, 733
Asp700I	GAANNNNTTC	1 cut(s)	854
AspS9I	GGNCC	1 cut(s)	255
AsuC2I	CCSGG	1 cut(s)	504
AsuHPI	GGTGA	2 cut(s)	148, 227
BalI	TGGCCA	2 cut(s)	207, 245
BanII	GRGCYC	2 cut(s)	301, 664
BbsI	GAAGAC	1 cut(s)	574
Bbv12I	GWGCWC	2 cut(s)	301, 664
BbvI	GCAGC	2 cut(s)	488, 683
BccI	CCATC	4 cut(s)	407, 456, 569, 623
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	1 cut(s)	504
BcoDI	GTCTC	2 cut(s)	299, 648
BcuI	ACTAGT	1 cut(s)	100
BfaI	CTAG	2 cut(s)	101, 668
BfmI	CTRYAG	2 cut(s)	474, 896
BisI	GCNGC	2 cut(s)	477, 672
BlsI	GCNGC	2 cut(s)	478, 673
Bme1390I	CCNGG	1 cut(s)	504
BmgT120I	GGNCC	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	1 cut(s)	823
BpiI	GAAGAC	1 cut(s)	574
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
Bpu10I	CCTNAGC	2 cut(s)	120, 226
BpuEI	CTTGAG	2 cut(s)	323, 559
BpuMI	CCSGG	1 cut(s)	504
BsaHI	GRCGYC	1 cut(s)	641
BsaJI	CCNNGG	3 cut(s)	61, 211, 240
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 252
Bse1I	ACTGG	1 cut(s)	793
Bse3DI	GCAATG	1 cut(s)	874
BseDI	CCNNGG	3 cut(s)	61, 211, 240
BseLI	CCNNNNNNNGG	2 cut(s)	230, 252
BseMI	GCAATG	1 cut(s)	874
BseNI	ACTGG	1 cut(s)	793
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	2 cut(s)	488, 683
BshFI	GGCC	6 cut(s)	60, 207, 245, 257, 522, 710
BsiHKAI	GWGCWC	2 cut(s)	301, 664
BsiSI	CCGG	1 cut(s)	504
BslI	CCNNNNNNNGG	2 cut(s)	230, 252
BsmAI	GTCTC	2 cut(s)	299, 648
BsmBI	CGTCTC	1 cut(s)	648
BsnI	GGCC	6 cut(s)	60, 207, 245, 257, 522, 710
Bsp1286I	GDGCHC	2 cut(s)	301, 664
Bsp143I	GATC	3 cut(s)	177, 454, 591
Bsp19I	CCATGG	1 cut(s)	61
BspANI	GGCC	6 cut(s)	60, 207, 245, 257, 522, 710
BspHI	TCATGA	1 cut(s)	783
BspMAI	CTGCAG	1 cut(s)	478
BspPI	GGATC	1 cut(s)	449
BsrDI	GCAATG	1 cut(s)	874
BsrI	ACTGG	1 cut(s)	793
BssECI	CCNNGG	3 cut(s)	61, 211, 240
BssMI	GATC	3 cut(s)	177, 454, 591
BssNAI	GTATAC	1 cut(s)	423
BssNI	GRCGYC	1 cut(s)	641
BssT1I	CCWWGG	3 cut(s)	61, 211, 240
Bst1107I	GTATAC	1 cut(s)	423
BstACI	GRCGYC	1 cut(s)	641
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstC8I	GCNNGC	3 cut(s)	147, 205, 366
BstDEI	CTNAG	2 cut(s)	120, 226
BstDSI	CCRYGG	1 cut(s)	61
BstKTI	GATC	3 cut(s)	180, 457, 594
BstMAI	GTCTC	2 cut(s)	299, 648
BstMBI	GATC	3 cut(s)	177, 454, 591
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 473, 668
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	502
BstSFI	CTRYAG	2 cut(s)	474, 896
BstV1I	GCAGC	2 cut(s)	488, 683
BstV2I	GAAGAC	1 cut(s)	574
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BstZ17I	GTATAC	1 cut(s)	423
BsuRI	GGCC	6 cut(s)	60, 207, 245, 257, 522, 710
BtgI	CCRYGG	1 cut(s)	61
Cac8I	GCNNGC	3 cut(s)	147, 205, 366
CciI	TCATGA	1 cut(s)	783
Cfr13I	GGNCC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	632
CviAII	CATG	9 cut(s)	62, 87, 196, 252, 571, 589, 716, 747, 784
CviQI	GTAC	1 cut(s)	632
DdeI	CTNAG	2 cut(s)	120, 226
DpnI	GATC	3 cut(s)	179, 456, 593
DpnII	GATC	3 cut(s)	177, 454, 591
DraIII	CACNNNGTG	1 cut(s)	314
EaeI	YGGCCR	2 cut(s)	205, 243
Ecl136II	GAGCTC	2 cut(s)	299, 662
Eco130I	CCWWGG	3 cut(s)	61, 211, 240
Eco24I	GRGCYC	2 cut(s)	301, 664
Eco53kI	GAGCTC	2 cut(s)	299, 662
Eco57I	CTGAAG	2 cut(s)	533, 660
EcoICRI	GAGCTC	2 cut(s)	299, 662
EcoT14I	CCWWGG	3 cut(s)	61, 211, 240
EcoT38I	GRGCYC	2 cut(s)	301, 664
ErhI	CCWWGG	3 cut(s)	61, 211, 240
Esp3I	CGTCTC	1 cut(s)	648
FaeI	CATG	9 cut(s)	65, 90, 199, 255, 574, 592, 719, 750, 787
FatI	CATG	9 cut(s)	61, 86, 195, 251, 570, 588, 715, 746, 783
FauNDI	CATATG	1 cut(s)	517
FbaI	TGATCA	1 cut(s)	177
FblI	GTMKAC	2 cut(s)	105, 422
Fnu4HI	GCNGC	2 cut(s)	477, 672
FriOI	GRGCYC	2 cut(s)	301, 664
Fsp4HI	GCNGC	2 cut(s)	477, 672
FspBI	CTAG	2 cut(s)	101, 668
GluI	GCNGC	2 cut(s)	477, 672
HaeIII	GGCC	6 cut(s)	60, 207, 245, 257, 522, 710
HapII	CCGG	1 cut(s)	504
Hin1I	GRCGYC	1 cut(s)	641
Hin1II	CATG	9 cut(s)	65, 90, 199, 255, 574, 592, 719, 750, 787
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	366
HinfI	GANTC	2 cut(s)	4, 22
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	2 cut(s)	148, 227
Hpy166II	GTNNAC	3 cut(s)	49, 106, 423
Hpy188I	TCNGA	1 cut(s)	552
Hpy188III	TCNNGA	6 cut(s)	8, 302, 452, 487, 538, 784
Hpy8I	GTNNAC	3 cut(s)	49, 106, 423
Hpy99I	CGWCG	1 cut(s)	848
HpyAV	CCTTC	4 cut(s)	50, 721, 746, 815
HpyCH4IV	ACGT	2 cut(s)	108, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 473, 668
HpyF3I	CTNAG	2 cut(s)	120, 226
HpySE526I	ACGT	2 cut(s)	108, 641
Hsp92I	GRCGYC	1 cut(s)	641
Hsp92II	CATG	9 cut(s)	65, 90, 199, 255, 574, 592, 719, 750, 787
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	3 cut(s)	177, 454, 591
LmnI	GCTCC	4 cut(s)	296, 401, 659, 667
Lsp1109I	GCAGC	2 cut(s)	488, 683
LweI	GCATC	1 cut(s)	823
MaeI	CTAG	2 cut(s)	101, 668
MaeII	ACGT	2 cut(s)	108, 641
MaeIII	GTNAC	2 cut(s)	262, 679
MalI	GATC	3 cut(s)	179, 456, 593
MboI	GATC	3 cut(s)	177, 454, 591
MboII	GAAGA	5 cut(s)	65, 80, 160, 539, 574
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	2 cut(s)	301, 664
MlsI	TGGCCA	2 cut(s)	207, 245
MluCI	AATT	9 cut(s)	150, 160, 247, 411, 462, 491, 498, 603, 733
MluNI	TGGCCA	2 cut(s)	207, 245
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	6 cut(s)	106, 109, 455, 468, 533, 820
Mox20I	TGGCCA	2 cut(s)	207, 245
MroXI	GAANNNNTTC	1 cut(s)	854
MscI	TGGCCA	2 cut(s)	207, 245
MslI	CAYNNNNRTG	3 cut(s)	185, 213, 575
Msp20I	TGGCCA	2 cut(s)	207, 245
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	3 cut(s)	242, 473, 668
NciI	CCSGG	1 cut(s)	504
NcoI	CCATGG	1 cut(s)	61
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	3 cut(s)	177, 454, 591
NlaIII	CATG	9 cut(s)	65, 90, 199, 255, 574, 592, 719, 750, 787
NspI	RCATGY	1 cut(s)	90
OliI	CACNNNNGTG	2 cut(s)	185, 213
PagI	TCATGA	1 cut(s)	783
PciI	ACATGT	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	854
PfeI	GAWTC	2 cut(s)	4, 22
PflMI	CCANNNNNTGG	1 cut(s)	252
PfoI	TCCNGGA	1 cut(s)	502
PkrI	GCNGC	2 cut(s)	478, 673
PscI	ACATGT	1 cut(s)	86
Psp124BI	GAGCTC	2 cut(s)	301, 664
PspPI	GGNCC	1 cut(s)	255
PstI	CTGCAG	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	454
RsaI	GTAC	1 cut(s)	633
RsaNI	GTAC	1 cut(s)	632
RseI	CAYNNNNRTG	3 cut(s)	185, 213, 575
SacI	GAGCTC	2 cut(s)	301, 664
SatI	GCNGC	2 cut(s)	477, 672
Sau3AI	GATC	3 cut(s)	177, 454, 591
Sau96I	GGNCC	1 cut(s)	255
ScrFI	CCNGG	1 cut(s)	504
SduI	GDGCHC	2 cut(s)	301, 664
SfaNI	GCATC	1 cut(s)	823
SfcI	CTRYAG	2 cut(s)	474, 896
SmiMI	CAYNNNNRTG	3 cut(s)	185, 213, 575
SmlI	CTYRAG	2 cut(s)	302, 538
SmoI	CTYRAG	2 cut(s)	302, 538
SpeI	ACTAGT	1 cut(s)	100
Sse9I	AATT	9 cut(s)	150, 160, 247, 411, 462, 491, 498, 603, 733
SspMI	CTAG	2 cut(s)	101, 668
SstI	GAGCTC	2 cut(s)	301, 664
StyD4I	CCNGG	1 cut(s)	502
StyI	CCWWGG	3 cut(s)	61, 211, 240
TaiI	ACGT	2 cut(s)	111, 644
TaqI	TCGA	1 cut(s)	843
TasI	AATT	9 cut(s)	150, 160, 247, 411, 462, 491, 498, 603, 733
TatI	WGTACW	1 cut(s)	631
TfiI	GAWTC	2 cut(s)	4, 22
TseI	GCWGC	2 cut(s)	476, 671
TspDTI	ATGAA	3 cut(s)	240, 596, 750
Van91I	CCANNNNNTGG	1 cut(s)	252
XapI	RAATTY	2 cut(s)	491, 733
XceI	RCATGY	1 cut(s)	90
XmiI	GTMKAC	2 cut(s)	105, 422
XmnI	GAANNNNTTC	1 cut(s)	854
XspI	CTAG	2 cut(s)	101, 668
ZraI	GACGTC	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.