Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000715

Physical Location & Seq

Genomic Coordinates Forward (+)

22894347 .. 22895974

Gene Structure 1628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g31740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAACATTTTGAAAGGGGGCAAAAGCTGTATTACGCTCGTTGTACGTTTGGAGGAGTACTGGGCTTTTGAGATTCTCGTGTTTATGGGAGGGTTGATGCCAAAGTCGACAAGAACCACTTCAGTACTTGCAATGTGTGTGAAGACACAAGAAATTGGTTACATATGGCCTGAGTGCTGCGCTAGTACAAGGGTGTCAAATGAATTGGGGGCAAGCAATCCGTATCAAGCAAAGAATGTGATGCGTGTGACTTTTAATCTCTCGCTGATTCTTTCTTTCATAATTGTTCTGGCTTTGACGTTTGGTCACAATACCTGCACAGGTTTCTTCATTGACAGCTCTTCGAATTATGCAGTTCTGATAGAGGGCTTTGCTTCTATGACACCACTTCTTGCAGTTTCAATAGTTCTTGATTCCTTGCAAGGAGTCTTTTCAGGATGTGGGTGGCAGCACTTTGTTGTGTATGTGAACTTGGGTGCATTTTATATTACTGGCATGACAATTTCTGGTCTTCTTGGATTTGTGTTGAAACATTATGCCAAGGGATTGTGGATTGGTTTCTACTGTGGTCTCTTCTTTCAAGCAAGCACGCTATTGTTGATTACACAGCTCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009636 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043207 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

207

Amino Acids

22.68

Weight (kDa)

8.68

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	17 - 166	2.9e-11	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23550 AT3G23560 AT3G23560
fragaria_vesca	FvH4_1g15630 FvH4_1g15630 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19720 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_5g31740 FvH4_7g19991
malus_domestica	MD03G1230300.v1.1 MD11G1250700.v1.1 MD11G1251300.v1.1 MD11G1251400.v1.1 MD11G1251500.v1.1 MD12G1088700.v1.1
prunus_persica	Prupe.4G177700_v2.0.a1 Prupe.4G177700_v2.0.a1 Prupe.4G177900_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G206700_v2.0.a1
pyrus_communis	pycom03g17780 pycom10g06980 pycom11g22170 pycom11g22270
rosa_chinensis	RchiOBHm_Chr5g0033011 RchiOBHm_Chr5g0033061
rosa_laevigata	RLG00000033443 RLG00000033445
rosa_multiflora	Rmu_sc0000986.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046880 Rroxscaffold_1G00046890 Rroxscaffold_1G00046990 Rroxscaffold_1G00047000 Rroxscaffold_1G00047040
rosa_rugosa	Rorug05G0135000 Rorug05G0135100 Rorug05G0135200 Rorug05G0135500 Rorug05G0135600 Rorug05G0135700 Rorug05G0135800
rosa_samantha	Rh5AG227700 Rh5AG228200 Rh5BG229300 Rh5BG229400 Rh5CG256700 Rh5CG257200 Rh5DG233900 Rh5DG234100
rosa_wichuraiana	Rw5G020860 Rw5G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	323
AccI	GTMKAC	1 cut(s)	107
AcuI	CTGAAG	1 cut(s)	105
AfaI	GTAC	4 cut(s)	45, 59, 126, 187
AgsI	TTSAA	4 cut(s)	13, 402, 529, 581
AhdI	GACNNNNNGTC	1 cut(s)	303
AluBI	AGCT	3 cut(s)	27, 339, 610
AluI	AGCT	3 cut(s)	27, 339, 610
Alw26I	GTCTC	1 cut(s)	575
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	177, 448
Asp700I	GAANNNNTTC	1 cut(s)	118
AspLEI	GCGC	1 cut(s)	182
AsuII	TTCGAA	1 cut(s)	344
BauI	CACGAG	1 cut(s)	77
BbsI	GAAGAC	2 cut(s)	149, 503
BbvI	GCAGC	2 cut(s)	164, 460
BcoDI	GTCTC	1 cut(s)	575
BfaI	CTAG	1 cut(s)	183
BfuAI	ACCTGC	1 cut(s)	323
BisI	GCNGC	2 cut(s)	178, 449
BlsI	GCNGC	2 cut(s)	179, 450
BmcAI	AGTACT	2 cut(s)	59, 126
BmeRI	GACNNNNNGTC	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	70
BmsI	GCATC	2 cut(s)	87, 231
BmuI	ACTGGG	1 cut(s)	70
BpiI	GAAGAC	2 cut(s)	149, 503
Bpu14I	TTCGAA	1 cut(s)	344
BpuEI	CTTGAG	1 cut(s)	596
BsaI	GGTCTC	1 cut(s)	575
BsaJI	CCNNGG	1 cut(s)	540
Bse1I	ACTGG	2 cut(s)	65, 496
Bse3DI	GCAATG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	540
BseGI	GGATG	1 cut(s)	443
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	2 cut(s)	65, 496
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	164, 460
BsgI	GTGCAG	1 cut(s)	301
BshFI	GGCC	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	575
BsnI	GGCC	1 cut(s)	169
Bso31I	GGTCTC	1 cut(s)	575
Bsp119I	TTCGAA	1 cut(s)	344
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	323
BspQI	GCTCTTC	1 cut(s)	346
BspT104I	TTCGAA	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	575
BsrDI	GCAATG	1 cut(s)	138
BsrI	ACTGG	2 cut(s)	65, 496
BssECI	CCNNGG	1 cut(s)	540
BssSI	CACGAG	1 cut(s)	77
BssT1I	CCWWGG	1 cut(s)	540
Bst2BI	CACGAG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	566
Bst6I	CTCTTC	2 cut(s)	346, 578
BstBI	TTCGAA	1 cut(s)	344
BstC8I	GCNNGC	3 cut(s)	214, 586, 590
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	443
BstHHI	GCGC	1 cut(s)	182
BstMAI	GTCTC	1 cut(s)	575
BstV1I	GCAGC	2 cut(s)	164, 460
BstV2I	GAAGAC	2 cut(s)	149, 503
BsuRI	GGCC	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	443
BveI	ACCTGC	1 cut(s)	323
Cac8I	GCNNGC	3 cut(s)	214, 586, 590
CfoI	GCGC	1 cut(s)	182
Csp6I	GTAC	4 cut(s)	44, 58, 125, 186
CviAII	CATG	1 cut(s)	496
CviJI	RGCY	7 cut(s)	27, 65, 169, 293, 339, 369, 610
CviKI_1	RGCY	7 cut(s)	27, 65, 169, 293, 339, 369, 610
CviQI	GTAC	4 cut(s)	44, 58, 125, 186
DdeI	CTNAG	1 cut(s)	171
DriI	GACNNNNNGTC	1 cut(s)	303
Eam1104I	CTCTTC	2 cut(s)	346, 578
Eam1105I	GACNNNNNGTC	1 cut(s)	303
EarI	CTCTTC	2 cut(s)	346, 578
Eco130I	CCWWGG	1 cut(s)	540
Eco31I	GGTCTC	1 cut(s)	575
Eco57I	CTGAAG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	1 cut(s)	499
FalI	AAGNNNNNCTT	2 cut(s)	103, 135
FatI	CATG	1 cut(s)	495
FauNDI	CATATG	1 cut(s)	164
FblI	GTMKAC	1 cut(s)	107
Fnu4HI	GCNGC	2 cut(s)	178, 449
FokI	GGATG	1 cut(s)	450
Fsp4HI	GCNGC	2 cut(s)	178, 449
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	2 cut(s)	178, 449
HaeIII	GGCC	1 cut(s)	169
HhaI	GCGC	1 cut(s)	182
Hin1II	CATG	1 cut(s)	499
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	4 cut(s)	73, 268, 413, 426
Hpy166II	GTNNAC	2 cut(s)	108, 469
Hpy188I	TCNGA	1 cut(s)	360
Hpy188III	TCNNGA	3 cut(s)	410, 435, 613
Hpy8I	GTNNAC	2 cut(s)	108, 469
HpyCH4III	ACNGT	1 cut(s)	566
HpyCH4IV	ACGT	2 cut(s)	46, 299
HpyCH4V	TGCA	6 cut(s)	131, 318, 353, 395, 421, 479
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	2 cut(s)	46, 299
Hsp92II	CATG	1 cut(s)	499
HspAI	GCGC	1 cut(s)	180
LguI	GCTCTTC	1 cut(s)	346
LpnPI	CCDG	8 cut(s)	46, 183, 275, 306, 328, 420, 477, 492
Lsp1109I	GCAGC	2 cut(s)	164, 460
LweI	GCATC	2 cut(s)	87, 231
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	2 cut(s)	46, 299
MaeIII	GTNAC	3 cut(s)	158, 247, 305
MboII	GAAGA	5 cut(s)	154, 319, 333, 503, 565
MluCI	AATT	5 cut(s)	153, 203, 282, 346, 501
MlyI	GAGTC	1 cut(s)	435
MnlI	CCTC	3 cut(s)	46, 83, 358
MroXI	GAANNNNTTC	1 cut(s)	118
MseI	TTAA	1 cut(s)	255
NdeI	CATATG	1 cut(s)	164
NlaIII	CATG	1 cut(s)	499
NmuCI	GTSAC	2 cut(s)	247, 305
NspV	TTCGAA	1 cut(s)	344
PciSI	GCTCTTC	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	118
PfeI	GAWTC	3 cut(s)	73, 268, 413
PkrI	GCNGC	2 cut(s)	179, 450
PleI	GAGTC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	434
RsaI	GTAC	4 cut(s)	45, 59, 126, 187
RsaNI	GTAC	4 cut(s)	44, 58, 125, 186
SalI	GTCGAC	1 cut(s)	106
SapI	GCTCTTC	1 cut(s)	346
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	2 cut(s)	178, 449
ScaI	AGTACT	2 cut(s)	59, 126
SchI	GAGTC	1 cut(s)	435
SetI	ASST	7 cut(s)	29, 49, 302, 317, 325, 341, 612
SfaNI	GCATC	2 cut(s)	87, 231
SfuI	TTCGAA	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
Sse9I	AATT	5 cut(s)	153, 203, 282, 346, 501
SspMI	CTAG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	1 cut(s)	566
TaiI	ACGT	2 cut(s)	49, 302
TaqI	TCGA	2 cut(s)	107, 344
TasI	AATT	5 cut(s)	153, 203, 282, 346, 501
TatI	WGTACW	3 cut(s)	57, 124, 185
TfiI	GAWTC	3 cut(s)	73, 268, 413
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TseFI	GTSAC	2 cut(s)	247, 305
TseI	GCWGC	2 cut(s)	177, 448
Tsp45I	GTSAC	2 cut(s)	247, 305
TspDTI	ATGAA	4 cut(s)	17, 216, 268, 319
TspGWI	ACGGA	1 cut(s)	210
XmiI	GTMKAC	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	118
XspI	CTAG	1 cut(s)	183
ZrmI	AGTACT	2 cut(s)	59, 126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.