pycom11g22270

MATE efflux family protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
25276504 .. 25279001
2498 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g22270.3

Sequence Viewer

Length: 1383 bp
ATGGAGAACGGAGACATGGTAGCAAACACTAACAATACGACCCCGTTGTTGGACGCAGGTGATCACGAAGAGGGGTGGTGGAACAAGGTGCTGGACTTAGAGGAGGCAAAAAACCAGGTGTTGTTTTCGTTGCCGATGATTCTGACCAACGTTTTCTTTTACATGATCCCTCTGATTTCTGTCATGTTTGCCGGCCATCTCGGTGAGCTTCAGCTTGCCGGTGCAACCCTTGCAAATTCTTGGGCCACCGTCACCGGCTTCGCTTTCATGGTTGGATCAAGTGGAGCTCTAGAAACGTTGTGTGGGCAAGGATTCGGCGCAAAGTTATATAGAATGCTGGGGATTTATCTACAAGCCTCTTGCATCATTTCATTCCTGTCCTCTATCGCTGTATCCGTAGTCTGGTTCTACACAGAGCCAATACTTATCTTAATTCATCAAGACCCTCAAATTTCAAAATATGCAGGGCTTTATATGAAATTTCTTATCCCGGGATTGTTTGCATACGGCTTCCTGCACAACATTTTGAGATTTCTTCAGACGCAATCTGTTGTCATGCCACTGGTCTACTTCTCGGTGATCCCAGTGGTTCTTCATGTTGGAATTGCATATAGTCTGGTACATTGGACAGGTCTTGGTTATGTGGGAGCTCCGCTGGCAGCTTCGATTTCAATATGGATATCGATGCTAATGTTGGCCACGTACGTTTTGTGCGCAAAGAAGTTTGAGGTTACGTGGGAAGGGTTTTCATTAGAATCATTTCATTATGTCCTCTCCAACTTGAAACTTGCTCTACCCTCTGCAGCAATGGTATGTTTAGAGTATTGGGCCTTCGAGATTCTGGTGTTCATGGCAGGAGTGATGCCAAACGCAGAACAAAACACTTCCCTAATTGCAATCTGCACAAGGGTGTCAAATGAATTGGGAGCAGGCAATCCTGAGAAAGCCAAGAATGCAATGGCTGTGACTCTTAAGCTTTCTATACTTCTCGCTCTAGTTGTTGTTCTGGCTCTGGCATTTGGTCACAATTTATGGGCCGGCTCCTTCAGCAACAGCAGTGTAATAATAAAACTATTTGCTTCCATGACACCATTGCTTGCAGTTTCAATAATTGCTGATTCTGTGCAAGGCGTCTTATCAGGTGTGGCCAGAGGATGTGGGTGGCAGCACTTGGCTGTGTATGTAAACTTGGGAACATTCTATTTGGTTGGCATGACAATTGCAAGTGTTCTTGCATTTAAGTTGAAACTATATGCTAAGGGGTTGTGGATTGGTTTAATCTGCGGTCTTTCATGCCAAACCGCCCTACTTTTGGTGGTTACGCTACGCACAAAATGGACTCGACTGGATTTACCTCGTAATGCAGATGCAGTTTTGGCCTAA

Protein Analysis

461

Amino Acids

50.05

Weight (kDa)

6.74

Isoelectric Point (pI)

28.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000715)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 47
Acc16I TGCGCA 1 cut(s) 715
Acc36I ACCTGC 1 cut(s) 47
AccI GTMKAC 1 cut(s) 567
AciI CCGC 3 cut(s) 653, 1284, 1302
AclI AACGTT 2 cut(s) 150, 296
AclWI GGATC 3 cut(s) 160, 283, 574
AcoI YGGCCR 3 cut(s) 193, 696, 1146
AcsI RAATTY 3 cut(s) 235, 450, 479
AcuI CTGAAG 3 cut(s) 194, 521, 1030
AcyI GRCGYC 1 cut(s) 1131
AfaI GTAC 2 cut(s) 621, 704
AfiI CCNNNNNNNGG 3 cut(s) 49, 402, 1312
AflII CTTAAG 1 cut(s) 971
AgsI TTSAA 5 cut(s) 456, 672, 784, 1107, 1246
AjnI CCWGG 1 cut(s) 114
AleI CACNNNNGTG 1 cut(s) 908
AluBI AGCT 6 cut(s) 208, 214, 287, 650, 662, 976
AluI AGCT 6 cut(s) 208, 214, 287, 650, 662, 976
Alw21I GWGCWC 2 cut(s) 289, 652
Alw26I GTCTC 1 cut(s) 6
AlwI GGATC 3 cut(s) 160, 283, 574
Ama87I CYCGRG 1 cut(s) 490
AoxI GGCC 7 cut(s) 193, 243, 696, 828, 1035, 1146, 1377
ApeKI GCWGC 3 cut(s) 659, 803, 1165
ApoI RAATTY 3 cut(s) 235, 450, 479
Asp700I GAANNNNTTC 1 cut(s) 759
AspLEI GCGC 2 cut(s) 320, 716
AspS9I GGNCC 3 cut(s) 243, 828, 1035
AsuC2I CCSGG 2 cut(s) 491, 492
AsuHPI GGTGA 4 cut(s) 71, 215, 244, 589
AvaI CYCGRG 1 cut(s) 490
BalI TGGCCA 2 cut(s) 698, 1148
BanII GRGCYC 2 cut(s) 289, 652
BarI GAAGNNNNNNTAC 2 cut(s) 815, 847
Bbv12I GWGCWC 2 cut(s) 289, 652
BbvI GCAGC 3 cut(s) 671, 815, 1177
BccI CCATC 1 cut(s) 204
BceAI ACGGC 1 cut(s) 523
BciT130I CCWGG 1 cut(s) 116
BciVI GTATCC 1 cut(s) 403
BclI TGATCA 1 cut(s) 61
BcnI CCSGG 2 cut(s) 491, 492
BcoDI GTCTC 1 cut(s) 6
BfaI CTAG 2 cut(s) 290, 995
BfmI CTRYAG 1 cut(s) 801
BfrI CTTAAG 1 cut(s) 971
BfuAI ACCTGC 1 cut(s) 47
BfuI GTATCC 1 cut(s) 403
BisI GCNGC 3 cut(s) 660, 804, 1166
BlsI GCNGC 3 cut(s) 661, 805, 1167
Bme1390I CCNGG 3 cut(s) 116, 491, 492
BmeT110I CYCGRG 1 cut(s) 490
BmgT120I GGNCC 3 cut(s) 243, 828, 1035
BmiI GGNNCC 1 cut(s) 1042
BmrFI CCNGG 3 cut(s) 116, 491, 492
BmrI ACTGGG 1 cut(s) 578
BmsI GCATC 4 cut(s) 372, 675, 852, 1357
BmuI ACTGGG 1 cut(s) 578
Bpu10I CCTNAGC 1 cut(s) 1257
BpuMI CCSGG 2 cut(s) 491, 492
Bsa29I ATCGAT 1 cut(s) 683
BsaAI YACGTR 2 cut(s) 702, 735
BsaHI GRCGYC 1 cut(s) 1131
BsaJI CCNNGG 1 cut(s) 490
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 402, 1312
Bse118I RCCGGY 4 cut(s) 191, 218, 254, 1037
Bse1I ACTGG 3 cut(s) 567, 584, 1350
Bse3DI GCAATG 3 cut(s) 813, 963, 1091
BseBI CCWGG 1 cut(s) 116
BseCI ATCGAT 1 cut(s) 683
BseDI CCNNGG 1 cut(s) 490
BseGI GGATG 1 cut(s) 1160
BseLI CCNNNNNNNGG 3 cut(s) 49, 402, 1312
BseMI GCAATG 3 cut(s) 813, 963, 1091
BseMII CTCAG 1 cut(s) 930
BseNI ACTGG 3 cut(s) 567, 584, 1350
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 3 cut(s) 671, 815, 1177
BseYI CCCAGC 1 cut(s) 337
BsgI GTGCAG 2 cut(s) 500, 886
BshFI GGCC 7 cut(s) 195, 245, 698, 830, 1037, 1148, 1379
BshVI ATCGAT 1 cut(s) 683
BsiHKAI GWGCWC 2 cut(s) 289, 652
BsiHKCI CYCGRG 1 cut(s) 490
BsiSI CCGG 5 cut(s) 192, 219, 255, 491, 1038
BsiWI CGTACG 1 cut(s) 702
BslI CCNNNNNNNGG 3 cut(s) 49, 402, 1312
BsmAI GTCTC 1 cut(s) 6
BsmI GAATGC 2 cut(s) 339, 958
BsnI GGCC 7 cut(s) 195, 245, 698, 830, 1037, 1148, 1379
BsoBI CYCGRG 1 cut(s) 490
Bsp1286I GDGCHC 2 cut(s) 289, 652
Bsp143I GATC 4 cut(s) 61, 165, 275, 579
BspACI CCGC 3 cut(s) 653, 1284, 1302
BspANI GGCC 7 cut(s) 195, 245, 698, 830, 1037, 1148, 1379
BspCNI CTCAG 1 cut(s) 931
BspDI ATCGAT 1 cut(s) 683
BspLI GGNNCC 1 cut(s) 1042
BspMAI CTGCAG 1 cut(s) 805
BspMI ACCTGC 1 cut(s) 47
BspPI GGATC 3 cut(s) 160, 283, 574
BspTI CTTAAG 1 cut(s) 971
BsrDI GCAATG 3 cut(s) 813, 963, 1091
BsrFI RCCGGY 4 cut(s) 191, 218, 254, 1037
BsrI ACTGG 3 cut(s) 567, 584, 1350
BssAI RCCGGY 4 cut(s) 191, 218, 254, 1037
BssECI CCNNGG 1 cut(s) 490
BssMI GATC 4 cut(s) 61, 165, 275, 579
BssNI GRCGYC 1 cut(s) 1131
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 1131
BstAFI CTTAAG 1 cut(s) 971
BstAPI GCANNNNNTGC 1 cut(s) 230
BstBAI YACGTR 2 cut(s) 702, 735
BstC8I GCNNGC 6 cut(s) 193, 216, 657, 931, 1039, 1098
BstDEI CTNAG 3 cut(s) 97, 939, 1257
BstF5I GGATG 1 cut(s) 1160
BstHHI GCGC 2 cut(s) 320, 716
BstKTI GATC 4 cut(s) 64, 168, 278, 582
BstMAI GTCTC 1 cut(s) 6
BstMBI GATC 4 cut(s) 61, 165, 275, 579
BstMWI GCNNNNNNNGC 5 cut(s) 230, 656, 953, 1047, 1376
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 3 cut(s) 114, 489, 490
BstSFI CTRYAG 1 cut(s) 801
BstV1I GCAGC 3 cut(s) 671, 815, 1177
Bsu15I ATCGAT 1 cut(s) 683
BsuI GTATCC 1 cut(s) 403
BsuRI GGCC 7 cut(s) 195, 245, 698, 830, 1037, 1148, 1379
BsuTUI ATCGAT 1 cut(s) 683
BtsCI GGATG 1 cut(s) 1160
BtsI GCAGTG 1 cut(s) 1063
BtsIMutI CAGTG 3 cut(s) 560, 591, 1063
BveI ACCTGC 1 cut(s) 47
Cac8I GCNNGC 6 cut(s) 193, 216, 657, 931, 1039, 1098
CfoI GCGC 2 cut(s) 320, 716
Cfr10I RCCGGY 4 cut(s) 191, 218, 254, 1037
Cfr13I GGNCC 3 cut(s) 243, 828, 1035
Cfr9I CCCGGG 1 cut(s) 490
ClaI ATCGAT 1 cut(s) 683
CseI GACGC 3 cut(s) 62, 550, 1120
CsiI ACCWGGT 1 cut(s) 114
Csp6I GTAC 2 cut(s) 620, 703
CviQI GTAC 2 cut(s) 620, 703
DdeI CTNAG 3 cut(s) 97, 939, 1257
DpnI GATC 4 cut(s) 63, 167, 277, 581
DpnII GATC 4 cut(s) 61, 165, 275, 579
EaeI YGGCCR 3 cut(s) 193, 696, 1146
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Ecl136II GAGCTC 2 cut(s) 287, 650
Eco24I GRGCYC 2 cut(s) 289, 652
Eco32I GATATC 1 cut(s) 681
Eco53kI GAGCTC 2 cut(s) 287, 650
Eco57I CTGAAG 3 cut(s) 194, 521, 1030
Eco88I CYCGRG 1 cut(s) 490
EcoICRI GAGCTC 2 cut(s) 287, 650
EcoRII CCWGG 1 cut(s) 114
EcoRV GATATC 1 cut(s) 681
EcoT38I GRGCYC 2 cut(s) 289, 652
FbaI TGATCA 1 cut(s) 61
FblI GTMKAC 1 cut(s) 567
Fnu4HI GCNGC 3 cut(s) 660, 804, 1166
FokI GGATG 1 cut(s) 1167
FriOI GRGCYC 2 cut(s) 289, 652
Fsp4HI GCNGC 3 cut(s) 660, 804, 1166
FspBI CTAG 2 cut(s) 290, 995
FspI TGCGCA 1 cut(s) 715
GlaI GCGC 2 cut(s) 319, 715
GluI GCNGC 3 cut(s) 660, 804, 1166
GsaI CCCAGC 1 cut(s) 341
HaeIII GGCC 7 cut(s) 195, 245, 698, 830, 1037, 1148, 1379
HapII CCGG 5 cut(s) 192, 219, 255, 491, 1038
HgaI GACGC 3 cut(s) 62, 550, 1120
HhaI GCGC 2 cut(s) 320, 716
Hin1I GRCGYC 1 cut(s) 1131
Hin6I GCGC 2 cut(s) 318, 714
HinP1I GCGC 2 cut(s) 318, 714
HindIII AAGCTT 1 cut(s) 974
HinfI GANTC 7 cut(s) 139, 312, 755, 838, 967, 1118, 1339
HpaII CCGG 5 cut(s) 192, 219, 255, 491, 1038
HphI GGTGA 4 cut(s) 71, 215, 244, 589
Hpy166II GTNNAC 2 cut(s) 568, 1186
Hpy188I TCNGA 3 cut(s) 144, 174, 540
Hpy188III TCNNGA 5 cut(s) 65, 290, 440, 835, 938
Hpy8I GTNNAC 2 cut(s) 568, 1186
HpyAV CCTTC 3 cut(s) 734, 841, 1054
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 5 cut(s) 150, 296, 701, 705, 734
HpyF10VI GCNNNNNNNGC 5 cut(s) 230, 656, 953, 1047, 1376
HpyF3I CTNAG 3 cut(s) 97, 939, 1257
HpySE526I ACGT 5 cut(s) 150, 296, 701, 705, 734
Hsp92I GRCGYC 1 cut(s) 1131
HspAI GCGC 2 cut(s) 318, 714
KroI GCCGGC 2 cut(s) 191, 1037
KroNI GCCGGC 2 cut(s) 193, 1039
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 4 cut(s) 61, 165, 275, 579
LmnI GCTCC 5 cut(s) 284, 647, 655, 926, 1046
Lsp1109I GCAGC 3 cut(s) 671, 815, 1177
LweI GCATC 4 cut(s) 372, 675, 852, 1357
MabI ACCWGGT 1 cut(s) 114
MaeI CTAG 2 cut(s) 290, 995
MaeII ACGT 5 cut(s) 150, 296, 701, 705, 734
MaeIII GTNAC 5 cut(s) 250, 730, 964, 1022, 1318
MalI GATC 4 cut(s) 63, 167, 277, 581
MboI GATC 4 cut(s) 61, 165, 275, 579
MboII GAAGA 3 cut(s) 80, 527, 584
MfeI CAATTG 1 cut(s) 1218
MhlI GDGCHC 2 cut(s) 289, 652
MlsI TGGCCA 2 cut(s) 698, 1148
MluNI TGGCCA 2 cut(s) 698, 1148
MlyI GAGTC 2 cut(s) 961, 1333
MmeI TCCRAC 4 cut(s) 30, 253, 580, 801
Mox20I TGGCCA 2 cut(s) 698, 1148
MroNI GCCGGC 2 cut(s) 191, 1037
MroXI GAANNNNTTC 1 cut(s) 759
MscI TGGCCA 2 cut(s) 698, 1148
MseI TTAA 4 cut(s) 431, 972, 1239, 1277
MslI CAYNNNNRTG 2 cut(s) 201, 908
Msp20I TGGCCA 2 cut(s) 698, 1148
MspA1I CMGCKG 1 cut(s) 655
MspCI CTTAAG 1 cut(s) 971
MspI CCGG 5 cut(s) 192, 219, 255, 491, 1038
MspR9I CCNGG 3 cut(s) 116, 491, 492
MunI CAATTG 1 cut(s) 1218
Mva1269I GAATGC 2 cut(s) 339, 958
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 5 cut(s) 230, 656, 953, 1047, 1376
NaeI GCCGGC 2 cut(s) 193, 1039
NciI CCSGG 2 cut(s) 491, 492
NdeII GATC 4 cut(s) 61, 165, 275, 579
NgoMIV GCCGGC 2 cut(s) 191, 1037
NlaIV GGNNCC 1 cut(s) 1042
NmuCI GTSAC 3 cut(s) 250, 964, 1022
NsbI TGCGCA 1 cut(s) 715
OliI CACNNNNGTG 1 cut(s) 908
PaqCI CACCTGC 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 393
PctI GAATGC 2 cut(s) 339, 958
PdiI GCCGGC 2 cut(s) 193, 1039
PdmI GAANNNNTTC 1 cut(s) 759
PfeI GAWTC 5 cut(s) 139, 312, 755, 838, 1118
Pfl23II CGTACG 1 cut(s) 702
PkrI GCNGC 3 cut(s) 661, 805, 1167
PleI GAGTC 2 cut(s) 961, 1333
PpsI GAGTC 2 cut(s) 961, 1333
Ppu21I YACGTR 2 cut(s) 702, 735
Psp124BI GAGCTC 2 cut(s) 289, 652
Psp1406I AACGTT 2 cut(s) 150, 296
Psp6I CCWGG 1 cut(s) 114
PspFI CCCAGC 1 cut(s) 337
PspGI CCWGG 1 cut(s) 114
PspLI CGTACG 1 cut(s) 702
PspN4I GGNNCC 1 cut(s) 1042
PspPI GGNCC 3 cut(s) 243, 828, 1035
PstI CTGCAG 1 cut(s) 805
RsaI GTAC 2 cut(s) 621, 704
RsaNI GTAC 2 cut(s) 620, 703
RseI CAYNNNNRTG 2 cut(s) 201, 908
SacI GAGCTC 2 cut(s) 289, 652
SaqAI TTAA 4 cut(s) 431, 972, 1239, 1277
SatI GCNGC 3 cut(s) 660, 804, 1166
Sau3AI GATC 4 cut(s) 61, 165, 275, 579
Sau96I GGNCC 3 cut(s) 243, 828, 1035
SchI GAGTC 2 cut(s) 961, 1333
ScrFI CCNGG 3 cut(s) 116, 491, 492
SduI GDGCHC 2 cut(s) 289, 652
SexAI ACCWGGT 1 cut(s) 114
SfaNI GCATC 4 cut(s) 372, 675, 852, 1357
SfcI CTRYAG 1 cut(s) 801
SmaI CCCGGG 1 cut(s) 492
SmiMI CAYNNNNRTG 2 cut(s) 201, 908
SmlI CTYRAG 1 cut(s) 971
SmoI CTYRAG 1 cut(s) 971
SsiI CCGC 3 cut(s) 653, 1284, 1302
SspMI CTAG 2 cut(s) 290, 995
SstI GAGCTC 2 cut(s) 289, 652
StyD4I CCNGG 3 cut(s) 114, 489, 490
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 5 cut(s) 153, 299, 704, 708, 737
TaqI TCGA 4 cut(s) 665, 683, 834, 1342
TfiI GAWTC 5 cut(s) 139, 312, 755, 838, 1118
Tru1I TTAA 4 cut(s) 431, 972, 1239, 1277
Tru9I TTAA 4 cut(s) 431, 972, 1239, 1277
TscAI CASTG 3 cut(s) 567, 591, 1063
TseFI GTSAC 3 cut(s) 250, 964, 1022
TseI GCWGC 3 cut(s) 659, 803, 1165
Tsp45I GTSAC 3 cut(s) 250, 964, 1022
TspGWI ACGGA 2 cut(s) 24, 385
TspMI CCCGGG 1 cut(s) 490
TspRI CASTG 3 cut(s) 567, 591, 1063
Vha464I CTTAAG 1 cut(s) 971
XapI RAATTY 3 cut(s) 235, 450, 479
XbaI TCTAGA 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 955
XmaI CCCGGG 1 cut(s) 490
XmiI GTMKAC 1 cut(s) 567
XmnI GAANNNNTTC 1 cut(s) 759
XspI CTAG 2 cut(s) 290, 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.