Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000715

Physical Location & Seq

Genomic Coordinates Reverse (-)

12248736 .. 12249523

Gene Structure 788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0135800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAGAATATGTCTGAGAGGAAGGTTGCATGCAAGAGGTGGACCACTATTTTGTGTCCTCCAATGGAGGCTTTGTTGAAGAAATCAATGGATATTGGGCGGCATTGGGCTGTTAGTATGTCTAGTGAGACTGTTTTTGAAGTTCATTCAGATAAATCAGTGGCGGTTGATCTTGGGAACAACACTTGCTCTTGCCGTCAATGGCAAATTAATTCATTCCCATGTTCTCATGCTCTTGCTGCAATCCAAAAGGTTGGAGTGGAACCTGTGTATAGTTACATTGAGCCGTTTTACACCTGTCAAAGCTACATGGATTCCTACGCGCATGTACCTGTTTATATGATTGAGAGTATCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009636 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043207 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

119

Amino Acids

13.55

Weight (kDa)

6.04

Isoelectric Point (pI)

69.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIM	PF04434	56 - 85	1.6e-10	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23550 AT3G23560 AT3G23560
fragaria_vesca	FvH4_1g15630 FvH4_1g15630 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19720 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_5g31740 FvH4_7g19991
malus_domestica	MD03G1230300.v1.1 MD11G1250700.v1.1 MD11G1251300.v1.1 MD11G1251400.v1.1 MD11G1251500.v1.1 MD12G1088700.v1.1
prunus_persica	Prupe.4G177700_v2.0.a1 Prupe.4G177700_v2.0.a1 Prupe.4G177900_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G206700_v2.0.a1
pyrus_communis	pycom03g17780 pycom10g06980 pycom11g22170 pycom11g22270
rosa_chinensis	RchiOBHm_Chr5g0033011 RchiOBHm_Chr5g0033061
rosa_laevigata	RLG00000033443 RLG00000033445
rosa_multiflora	Rmu_sc0000986.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046880 Rroxscaffold_1G00046890 Rroxscaffold_1G00046990 Rroxscaffold_1G00047000 Rroxscaffold_1G00047040
rosa_rugosa	Rorug05G0135000 Rorug05G0135100 Rorug05G0135200 Rorug05G0135500 Rorug05G0135600 Rorug05G0135700 Rorug05G0135800
rosa_samantha	Rh5AG227700 Rh5AG228200 Rh5BG229300 Rh5BG229400 Rh5CG256700 Rh5CG257200 Rh5DG233900 Rh5DG234100
rosa_wichuraiana	Rw5G020860 Rw5G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	323
AciI	CCGC	2 cut(s)	100, 164
AfaI	GTAC	1 cut(s)	330
AgsI	TTSAA	2 cut(s)	79, 140
AluBI	AGCT	1 cut(s)	306
AluI	AGCT	1 cut(s)	306
Alw26I	GTCTC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	239
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
AseI	ATTAAT	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	226
BceAI	ACGGC	2 cut(s)	180, 271
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	123
BisI	GCNGC	2 cut(s)	101, 240
BlsI	GCNGC	2 cut(s)	102, 241
Bme18I	GGWCC	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	264
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 59, 89
BseMII	CTCAG	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	323
BsmAI	GTCTC	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	2 cut(s)	100, 164
BspCNI	CTCAG	1 cut(s)	7
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	1 cut(s)	264
BssMI	GATC	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	1 cut(s)	15
BstFNI	CGCG	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNSI	RCATGY	2 cut(s)	33, 329
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	1 cut(s)	226
BstXI	CCANNNNNNTGG	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	31
CfoI	GCGC	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	329
CviAII	CATG	5 cut(s)	30, 222, 230, 310, 326
CviJI	RGCY	4 cut(s)	71, 110, 286, 306
CviKI_1	RGCY	4 cut(s)	71, 110, 286, 306
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	42
FaeI	CATG	5 cut(s)	33, 225, 233, 313, 329
FatI	CATG	5 cut(s)	29, 221, 229, 309, 325
Fnu4HI	GCNGC	2 cut(s)	101, 240
Fsp4HI	GCNGC	2 cut(s)	101, 240
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	2 cut(s)	101, 240
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	5 cut(s)	33, 225, 233, 313, 329
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	1 cut(s)	314
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	2 cut(s)	16, 151
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	3 cut(s)	29, 33, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	1 cut(s)	15
Hsp92II	CATG	5 cut(s)	33, 225, 233, 313, 329
HspAI	GCGC	1 cut(s)	323
Kzo9I	GATC	1 cut(s)	169
LpnPI	CCDG	3 cut(s)	279, 310, 345
Lsp1109I	GCAGC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	1 cut(s)	91
MluCI	AATT	2 cut(s)	207, 211
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	4 cut(s)	12, 30, 61, 69
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	5 cut(s)	33, 225, 233, 313, 329
NlaIV	GGNNCC	1 cut(s)	264
NspI	RCATGY	2 cut(s)	33, 329
PaeI	GCATGC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	2 cut(s)	102, 241
PshBI	ATTAAT	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	42
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
RseI	CAYNNNNRTG	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	2 cut(s)	101, 240
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	1 cut(s)	42
SetI	ASST	7 cut(s)	27, 41, 255, 268, 299, 308, 334
SinI	GGWCC	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	220
SphI	GCATGC	1 cut(s)	33
Sse9I	AATT	2 cut(s)	207, 211
SsiI	CCGC	2 cut(s)	100, 164
SspMI	CTAG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	133
TasI	AATT	2 cut(s)	207, 211
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	165
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	2 cut(s)	134, 204
TspRI	CASTG	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	42
VspI	ATTAAT	1 cut(s)	210
XceI	RCATGY	2 cut(s)	33, 329
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.