Rh5AG228200

MATE efflux family protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
27428310 .. 27431496
3187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG228200.1

Sequence Viewer

Length: 1269 bp
ATGGCGCCTCTTCTGATTTCATCGATGATAGGGGAAGTTTTCCAGTTTCTGCATGGAGTTCGTTATACTAAACTAGCAGGTGTCAACGAAGAAGGCCATGGAGAAGAAACATCAACAGGAACATGTTGTAAGATACTATTAGACGTTGAGGAGGCTAAGGAACAGGTCTTGTTTTCGTTGCCAGCAATTCTCACCAATTTATTCTTCTCCTTGATCACATTGGTGTCTGTCATGTTTGCTGGCCACCTTGGTGAGCTTCCCTTAGCTGGTGCAACCTTGGCCAATTCATGGGCCAATGTTACAGGTTTTGCATTTGTGGTTGGATTAAGTGGAGCTCTTGAGACACTTTGTGGGCAAGGGTTTGGTGCAAAGTCATATAGAATGTTGGGGATTTATCTACAAGCTTCTTGTATCATATCTTTCCTATTCTGCTCCATCATATCTGTAATTTGGTTGTATACAGAACCAATACTTATTTTCCTCCATCAAGATCCTCAAATTGCAAAATCTGCAGCTCTTTTCTTGAAATTTCTAATTCCCGGATTATTTGCATATGGCCTCCTGCAAAACATCTTGAGATTCCTTCAGACACAATCCATCTATGTCATGCCAATGGTCTTCTCCATGATCTCCATTGTAATTCATATTGCCATCACTTATGGTTTAGTACATTGGACATCTCTTGGTTTCAAGGGAGCTCCACTAGCAGCTTCAGTTACTCTGTGGATATCGGTTCTTATGTTGGCCTTCCATGTTAGTTTTGCAAAGAATTTTGAGCATACATGGGAAGGATTTTCATTAGAACCATTCCAATATATCATGACTGGTTTGAAACTTGCCCTTCCGTCTGCAACAATGGAATGTTTGGAGGAGTGGGCTTTCGAGATTCTTGTGTTTATGGGAGGATTGATGCCAAACTCGACGAGAACAACTTCACTACTTGCAATGTGTGTGAACACACAAGAAATTGGTTACATGGTTACATATGGCCTCAGTGTTACTGCTAGTACAAGGGTGTCAAATGAATTGGGGGCAGGCAACCCAGGTCGAGCAAAGAATGCAATGCTTGTGACTCTTAAGCTCTCACTGATTCTTTCTTTCACAATTGTTCTGGCTTTGACATTTGGTCACAATATCTGGGCACGCTTCTTCATTGACAGCAGTTCAAATTATTCAGTACTGATAGAGGATTTTGCTTCTATGACACCACTTCTTGCAGTTTCAATAATTCTTGATTCCTTGCAAGGTGTCTTTTCAGGTGAAGATTAA

Protein Analysis

422

Amino Acids

46.09

Weight (kDa)

5.37

Isoelectric Point (pI)

29.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 61 - 220 9.1e-35 MatE
MatE PF01554 282 - 420 1.5e-15 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000715)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 68
Acc36I ACCTGC 1 cut(s) 68
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 288
AccI GTMKAC 1 cut(s) 458
AclWI GGATC 1 cut(s) 485
AcoI YGGCCR 2 cut(s) 241, 279
AcsI RAATTY 2 cut(s) 527, 769
AcuI CTGAAG 2 cut(s) 569, 696
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 350
AfaI GTAC 3 cut(s) 669, 1009, 1179
AfiI CCNNNNNNNGG 2 cut(s) 266, 288
AflII CTTAAG 1 cut(s) 1076
AflIII ACRYGT 1 cut(s) 122
AgsI TTSAA 5 cut(s) 526, 691, 832, 1167, 1224
AhdI GACNNNNNGTC 1 cut(s) 1125
AjnI CCWGG 1 cut(s) 1042
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AleI CACNNNNGTG 2 cut(s) 221, 249
AluBI AGCT 8 cut(s) 256, 266, 335, 404, 515, 698, 710, 1081
AluI AGCT 8 cut(s) 256, 266, 335, 404, 515, 698, 710, 1081
Alw21I GWGCWC 2 cut(s) 337, 700
Alw26I GTCTC 1 cut(s) 335
AlwI GGATC 1 cut(s) 485
AlwNI CAGNNNCTG 1 cut(s) 49
AoxI GGCC 7 cut(s) 94, 241, 279, 291, 556, 744, 988
ApeKI GCWGC 2 cut(s) 512, 707
ApoI RAATTY 2 cut(s) 527, 769
Asp700I GAANNNNTTC 1 cut(s) 931
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 291
AsuC2I CCSGG 1 cut(s) 540
AsuHPI GGTGA 2 cut(s) 184, 263
BaeGI GKGCMC 1 cut(s) 1144
BalI TGGCCA 2 cut(s) 243, 281
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 337, 700
BbsI GAAGAC 1 cut(s) 610
Bbv12I GWGCWC 2 cut(s) 337, 700
BbvI GCAGC 2 cut(s) 524, 719
BccI CCATC 4 cut(s) 443, 492, 605, 659
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BciT130I CCWGG 1 cut(s) 1044
BclI TGATCA 1 cut(s) 213
BcnI CCSGG 1 cut(s) 540
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 3 cut(s) 74, 704, 1005
BfmI CTRYAG 1 cut(s) 510
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 1076
BfuAI ACCTGC 1 cut(s) 68
BisI GCNGC 2 cut(s) 513, 708
BlsI GCNGC 2 cut(s) 514, 709
BmcAI AGTACT 1 cut(s) 1179
Bme1390I CCNGG 2 cut(s) 540, 1044
BmeRI GACNNNNNGTC 1 cut(s) 1125
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 540, 1044
BmsI GCATC 1 cut(s) 900
BpiI GAAGAC 1 cut(s) 610
Bpu10I CCTNAGC 2 cut(s) 156, 262
BpuEI CTTGAG 2 cut(s) 359, 595
BpuMI CCSGG 1 cut(s) 540
Bsa29I ATCGAT 1 cut(s) 23
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 97, 247, 276, 1042
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 288
Bse1I ACTGG 2 cut(s) 43, 829
Bse3DI GCAATG 2 cut(s) 951, 1068
BseBI CCWGG 1 cut(s) 1044
BseCI ATCGAT 1 cut(s) 23
BseDI CCNNGG 4 cut(s) 97, 247, 276, 1042
BseLI CCNNNNNNNGG 2 cut(s) 266, 288
BseMI GCAATG 2 cut(s) 951, 1068
BseMII CTCAG 1 cut(s) 1006
BseNI ACTGG 2 cut(s) 43, 829
BseRI GAGGAG 2 cut(s) 164, 884
BseSI GKGCMC 1 cut(s) 1144
BseXI GCAGC 2 cut(s) 524, 719
BshFI GGCC 7 cut(s) 96, 243, 281, 293, 558, 746, 990
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 23
BsiHKAI GWGCWC 2 cut(s) 337, 700
BsiSI CCGG 1 cut(s) 540
BslI CCNNNNNNNGG 2 cut(s) 266, 288
BsmAI GTCTC 1 cut(s) 335
BsmI GAATGC 1 cut(s) 1063
BsnI GGCC 7 cut(s) 96, 243, 281, 293, 558, 746, 990
Bsp1286I GDGCHC 3 cut(s) 337, 700, 1144
Bsp143I GATC 3 cut(s) 213, 490, 627
Bsp19I CCATGG 1 cut(s) 97
BspANI GGCC 7 cut(s) 96, 243, 281, 293, 558, 746, 990
BspCNI CTCAG 1 cut(s) 1005
BspDI ATCGAT 1 cut(s) 23
BspHI TCATGA 1 cut(s) 819
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 514
BspMI ACCTGC 1 cut(s) 68
BspPI GGATC 1 cut(s) 485
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 1076
BsrDI GCAATG 2 cut(s) 951, 1068
BsrI ACTGG 2 cut(s) 43, 829
BssECI CCNNGG 4 cut(s) 97, 247, 276, 1042
BssMI GATC 3 cut(s) 213, 490, 627
BssNAI GTATAC 1 cut(s) 459
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 3 cut(s) 97, 247, 276
Bst1107I GTATAC 1 cut(s) 459
Bst2UI CCWGG 1 cut(s) 1044
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 1076
BstAPI GCANNNNNTGC 2 cut(s) 509, 1058
BstC8I GCNNGC 4 cut(s) 183, 241, 1036, 1144
BstDEI CTNAG 3 cut(s) 156, 262, 992
BstDSI CCRYGG 1 cut(s) 97
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 216, 493, 630
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 3 cut(s) 213, 490, 627
BstMWI GCNNNNNNNGC 4 cut(s) 278, 509, 704, 1058
BstNI CCWGG 1 cut(s) 1044
BstNSI RCATGY 1 cut(s) 126
BstSCI CCNGG 2 cut(s) 538, 1042
BstSFI CTRYAG 1 cut(s) 510
BstSLI GKGCMC 1 cut(s) 1144
BstV1I GCAGC 2 cut(s) 524, 719
BstV2I GAAGAC 1 cut(s) 610
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
BstZ17I GTATAC 1 cut(s) 459
Bsu15I ATCGAT 1 cut(s) 23
BsuRI GGCC 7 cut(s) 96, 243, 281, 293, 558, 746, 990
BsuTUI ATCGAT 1 cut(s) 23
BtgI CCRYGG 1 cut(s) 97
BtsIMutI CAGTG 2 cut(s) 1000, 1085
BveI ACCTGC 1 cut(s) 68
Cac8I GCNNGC 4 cut(s) 183, 241, 1036, 1144
CaiI CAGNNNCTG 1 cut(s) 49
CciI TCATGA 1 cut(s) 819
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 291
ClaI ATCGAT 1 cut(s) 23
Csp6I GTAC 3 cut(s) 668, 1008, 1178
CviQI GTAC 3 cut(s) 668, 1008, 1178
DdeI CTNAG 3 cut(s) 156, 262, 992
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 215, 492, 629
DpnII GATC 3 cut(s) 213, 490, 627
DraIII CACNNNGTG 1 cut(s) 350
DriI GACNNNNNGTC 1 cut(s) 1125
EaeI YGGCCR 2 cut(s) 241, 279
Eam1104I CTCTTC 1 cut(s) 15
Eam1105I GACNNNNNGTC 1 cut(s) 1125
EarI CTCTTC 1 cut(s) 15
Ecl136II GAGCTC 2 cut(s) 335, 698
Eco130I CCWWGG 3 cut(s) 97, 247, 276
Eco24I GRGCYC 2 cut(s) 337, 700
Eco32I GATATC 1 cut(s) 729
Eco53kI GAGCTC 2 cut(s) 335, 698
Eco57I CTGAAG 2 cut(s) 569, 696
EcoICRI GAGCTC 2 cut(s) 335, 698
EcoRII CCWGG 1 cut(s) 1042
EcoRV GATATC 1 cut(s) 729
EcoT14I CCWWGG 3 cut(s) 97, 247, 276
EcoT38I GRGCYC 2 cut(s) 337, 700
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 3 cut(s) 97, 247, 276
FauNDI CATATG 2 cut(s) 553, 985
FbaI TGATCA 1 cut(s) 213
FblI GTMKAC 1 cut(s) 458
Fnu4HI GCNGC 2 cut(s) 513, 708
FriOI GRGCYC 2 cut(s) 337, 700
Fsp4HI GCNGC 2 cut(s) 513, 708
FspBI CTAG 3 cut(s) 74, 704, 1005
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 513, 708
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 7 cut(s) 96, 243, 281, 293, 558, 746, 990
HapII CCGG 1 cut(s) 540
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 402
HinfI GANTC 5 cut(s) 579, 886, 1072, 1090, 1235
HpaII CCGG 1 cut(s) 540
HphI GGTGA 2 cut(s) 184, 263
Hpy166II GTNNAC 3 cut(s) 85, 459, 955
Hpy188I TCNGA 2 cut(s) 15, 588
Hpy188III TCNNGA 7 cut(s) 338, 488, 523, 574, 820, 883, 1232
Hpy8I GTNNAC 3 cut(s) 85, 459, 955
Hpy99I CGWCG 1 cut(s) 925
HpyAV CCTTC 5 cut(s) 86, 593, 757, 782, 851
HpyCH4IV ACGT 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 4 cut(s) 278, 509, 704, 1058
HpyF3I CTNAG 3 cut(s) 156, 262, 992
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 3 cut(s) 213, 490, 627
LmnI GCTCC 4 cut(s) 332, 437, 695, 703
Lsp1109I GCAGC 2 cut(s) 524, 719
LweI GCATC 1 cut(s) 900
MaeI CTAG 3 cut(s) 74, 704, 1005
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 7 cut(s) 298, 715, 971, 979, 997, 1069, 1127
MalI GATC 3 cut(s) 215, 492, 629
MboI GATC 3 cut(s) 213, 490, 627
MboII GAAGA 5 cut(s) 101, 116, 196, 610, 1141
MfeI CAATTG 1 cut(s) 1104
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 3 cut(s) 337, 700, 1144
MlsI TGGCCA 2 cut(s) 243, 281
MluNI TGGCCA 2 cut(s) 243, 281
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 1066
MmeI TCCRAC 1 cut(s) 301
Mox20I TGGCCA 2 cut(s) 243, 281
MroXI GAANNNNTTC 1 cut(s) 931
MscI TGGCCA 2 cut(s) 243, 281
MseI TTAA 3 cut(s) 326, 1077, 1267
MslI CAYNNNNRTG 3 cut(s) 221, 249, 611
Msp20I TGGCCA 2 cut(s) 243, 281
MspCI CTTAAG 1 cut(s) 1076
MspI CCGG 1 cut(s) 540
MspR9I CCNGG 2 cut(s) 540, 1044
MunI CAATTG 1 cut(s) 1104
Mva1269I GAATGC 1 cut(s) 1063
MvaI CCWGG 1 cut(s) 1044
MwoI GCNNNNNNNGC 4 cut(s) 278, 509, 704, 1058
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 540
NcoI CCATGG 1 cut(s) 97
NdeI CATATG 2 cut(s) 553, 985
NdeII GATC 3 cut(s) 213, 490, 627
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 1069, 1127
NspI RCATGY 1 cut(s) 126
OliI CACNNNNGTG 2 cut(s) 221, 249
PagI TCATGA 1 cut(s) 819
PaqCI CACCTGC 1 cut(s) 68
PciI ACATGT 1 cut(s) 122
PctI GAATGC 1 cut(s) 1063
PdmI GAANNNNTTC 1 cut(s) 931
PfeI GAWTC 4 cut(s) 579, 886, 1090, 1235
PflMI CCANNNNNTGG 1 cut(s) 288
PfoI TCCNGGA 1 cut(s) 538
PkrI GCNGC 2 cut(s) 514, 709
PleI GAGTC 1 cut(s) 1066
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 1066
PscI ACATGT 1 cut(s) 122
Psp124BI GAGCTC 2 cut(s) 337, 700
Psp6I CCWGG 1 cut(s) 1042
PspGI CCWGG 1 cut(s) 1042
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 291
PstI CTGCAG 1 cut(s) 514
PstNI CAGNNNCTG 1 cut(s) 49
PsuI RGATCY 1 cut(s) 490
RsaI GTAC 3 cut(s) 669, 1009, 1179
RsaNI GTAC 3 cut(s) 668, 1008, 1178
RseI CAYNNNNRTG 3 cut(s) 221, 249, 611
SacI GAGCTC 2 cut(s) 337, 700
SaqAI TTAA 3 cut(s) 326, 1077, 1267
SatI GCNGC 2 cut(s) 513, 708
Sau3AI GATC 3 cut(s) 213, 490, 627
Sau96I GGNCC 1 cut(s) 291
ScaI AGTACT 1 cut(s) 1179
SchI GAGTC 1 cut(s) 1066
ScrFI CCNGG 2 cut(s) 540, 1044
SduI GDGCHC 3 cut(s) 337, 700, 1144
SfaNI GCATC 1 cut(s) 900
SfcI CTRYAG 1 cut(s) 510
SfoI GGCGCC 1 cut(s) 6
SmiMI CAYNNNNRTG 3 cut(s) 221, 249, 611
SmlI CTYRAG 3 cut(s) 338, 574, 1076
SmoI CTYRAG 3 cut(s) 338, 574, 1076
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 3 cut(s) 74, 704, 1005
SstI GAGCTC 2 cut(s) 337, 700
StyD4I CCNGG 2 cut(s) 538, 1042
StyI CCWWGG 3 cut(s) 97, 247, 276
TaiI ACGT 1 cut(s) 147
TaqI TCGA 4 cut(s) 23, 882, 920, 1048
TatI WGTACW 3 cut(s) 667, 1007, 1177
TfiI GAWTC 4 cut(s) 579, 886, 1090, 1235
Tru1I TTAA 3 cut(s) 326, 1077, 1267
Tru9I TTAA 3 cut(s) 326, 1077, 1267
TscAI CASTG 2 cut(s) 1000, 1092
TseFI GTSAC 2 cut(s) 1069, 1127
TseI GCWGC 2 cut(s) 512, 707
Tsp45I GTSAC 2 cut(s) 1069, 1127
TspDTI ATGAA 6 cut(s) 9, 276, 632, 786, 1038, 1141
TspGWI ACGGA 1 cut(s) 834
TspRI CASTG 2 cut(s) 1000, 1092
Van91I CCANNNNNTGG 1 cut(s) 288
Vha464I CTTAAG 1 cut(s) 1076
XapI RAATTY 2 cut(s) 527, 769
XceI RCATGY 1 cut(s) 126
XcmI CCANNNNNNNNNTGG 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 458
XmnI GAANNNNTTC 1 cut(s) 931
XspI CTAG 3 cut(s) 74, 704, 1005
ZrmI AGTACT 1 cut(s) 1179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.