FvH4_1g15630

antiporter activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000715
Physical Location & Seq
Reverse (-)
8866798 .. 8869786
2989 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15630.t1

Sequence Viewer

Length: 558 bp
ATGACAATTTCTGGTCTTCTTGGATTTGTGTTGAAACGTTATGCCAAGGGATTGTGGATTGGTTTCTACTGTGGTCTCTTCTTTCAAGCAAGCACACTATTGTTGATTACACAACTCAAGAAATGGACATCTGATTTCCAGTACGTCAAAAGCATCTTCACAAATGCAGTGAAACCTGAAACTCAAATGAGGAAGCTTCAAGACCGATCTGAAGATTTCGCTGCGATCTCAAGATTCCCATCCAGTCTGTTGTTTGTTGAAAGTAGCCCAATCGATCTCAATTTCTCAAGATTTCGTCTTTCATCACTGCGCTTCACTTTACCACTCTCAACATCGACTGCCCTCGCCGCTTTGTATATCTCTCTCTCGATCTCTCTTGATCCCTGTCCCCGCTTTACATCTCTTCTTCTCTCTCTCCATCAAACCGAAAGAATATCTATCGAAACTAGATTGAATCTCTTGATCGACTTGCTTCGACCGCTCGATTTTAGCTGTAAATTTTACAACCCAGGCTTCAAATCGATTTCTTTTCAGACTTTAGTGGCGATCTGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

186

Amino Acids

21.14

Weight (kDa)

9.67

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000715)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23550 AT3G23560 AT3G23560
fragaria_vesca FvH4_1g15630 FvH4_1g15630 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19720 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_5g31740 FvH4_7g19991
malus_domestica MD03G1230300.v1.1 MD11G1250700.v1.1 MD11G1251300.v1.1 MD11G1251400.v1.1 MD11G1251500.v1.1 MD12G1088700.v1.1
prunus_persica Prupe.4G177700_v2.0.a1 Prupe.4G177700_v2.0.a1 Prupe.4G177900_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G206700_v2.0.a1
pyrus_communis pycom03g17780 pycom10g06980 pycom11g22170 pycom11g22270
rosa_chinensis RchiOBHm_Chr5g0033011 RchiOBHm_Chr5g0033061
rosa_laevigata RLG00000033443 RLG00000033445
rosa_multiflora Rmu_sc0000986.1_g000015
rosa_roxburghii Rroxscaffold_1G00046880 Rroxscaffold_1G00046890 Rroxscaffold_1G00046990 Rroxscaffold_1G00047000 Rroxscaffold_1G00047040
rosa_rugosa Rorug05G0135000 Rorug05G0135100 Rorug05G0135200 Rorug05G0135500 Rorug05G0135600 Rorug05G0135700 Rorug05G0135800
rosa_samantha Rh5AG227700 Rh5AG228200 Rh5BG229300 Rh5BG229400 Rh5CG256700 Rh5CG257200 Rh5DG233900 Rh5DG234100
rosa_wichuraiana Rw5G020860 Rw5G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 481
AciI CCGC 3 cut(s) 348, 391, 479
AclI AACGTT 1 cut(s) 37
AclWI GGATC 1 cut(s) 374
AcsI RAATTY 1 cut(s) 497
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 1 cut(s) 143
AgsI TTSAA 6 cut(s) 34, 86, 200, 260, 454, 517
AjnI CCWGG 1 cut(s) 508
AluBI AGCT 2 cut(s) 196, 492
AluI AGCT 2 cut(s) 196, 492
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 1 cut(s) 374
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 1 cut(s) 497
AspLEI GCGC 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 208
BccI CCATC 2 cut(s) 247, 426
BciT130I CCWGG 1 cut(s) 510
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 447
BisI GCNGC 2 cut(s) 222, 348
BlsI GCNGC 2 cut(s) 223, 349
Bme1390I CCNGG 1 cut(s) 510
BmrFI CCNGG 1 cut(s) 510
BmsI GCATC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 8
BpuEI CTTGAG 3 cut(s) 101, 214, 271
Bsa29I ATCGAT 2 cut(s) 273, 521
BsaBI GATNNNNATC 1 cut(s) 238
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 45, 508
Bse1I ACTGG 2 cut(s) 139, 243
Bse8I GATNNNNATC 1 cut(s) 238
BseBI CCWGG 1 cut(s) 510
BseCI ATCGAT 2 cut(s) 273, 521
BseDI CCNNGG 2 cut(s) 45, 508
BseGI GGATG 1 cut(s) 239
BseJI GATNNNNATC 1 cut(s) 238
BseNI ACTGG 2 cut(s) 139, 243
BseXI GCAGC 1 cut(s) 208
Bsh1285I CGRYCG 1 cut(s) 479
BshVI ATCGAT 2 cut(s) 273, 521
BsiEI CGRYCG 1 cut(s) 479
BslFI GGGAC 1 cut(s) 372
BsmAI GTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 372
Bso31I GGTCTC 1 cut(s) 80
Bsp143I GATC 7 cut(s) 206, 225, 274, 369, 379, 462, 546
BspACI CCGC 3 cut(s) 348, 391, 479
BspDI ATCGAT 2 cut(s) 273, 521
BspPI GGATC 1 cut(s) 374
BspTNI GGTCTC 1 cut(s) 80
BsrBI CCGCTC 1 cut(s) 481
BsrI ACTGG 2 cut(s) 139, 243
BssECI CCNNGG 2 cut(s) 45, 508
BssMI GATC 7 cut(s) 206, 225, 274, 369, 379, 462, 546
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 1 cut(s) 71
Bst6I CTCTTC 2 cut(s) 83, 408
BstC8I GCNNGC 1 cut(s) 91
BstF5I GGATG 1 cut(s) 239
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 7 cut(s) 209, 228, 277, 372, 382, 465, 549
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 7 cut(s) 206, 225, 274, 369, 379, 462, 546
BstMCI CGRYCG 1 cut(s) 479
BstMWI GCNNNNNNNGC 2 cut(s) 347, 478
BstNI CCWGG 1 cut(s) 510
BstSCI CCNGG 1 cut(s) 508
BstV1I GCAGC 1 cut(s) 208
BstV2I GAAGAC 1 cut(s) 8
Bsu15I ATCGAT 2 cut(s) 273, 521
BsuTUI ATCGAT 2 cut(s) 273, 521
BtsCI GGATG 1 cut(s) 239
BtsI GCAGTG 2 cut(s) 174, 305
BtsIMutI CAGTG 2 cut(s) 174, 305
Cac8I GCNNGC 1 cut(s) 91
CfoI GCGC 1 cut(s) 312
ClaI ATCGAT 2 cut(s) 273, 521
Csp6I GTAC 1 cut(s) 142
CviJI RGCY 4 cut(s) 196, 267, 492, 513
CviKI_1 RGCY 4 cut(s) 196, 267, 492, 513
CviQI GTAC 1 cut(s) 142
DpnI GATC 7 cut(s) 208, 227, 276, 371, 381, 464, 548
DpnII GATC 7 cut(s) 206, 225, 274, 369, 379, 462, 546
Eam1104I CTCTTC 2 cut(s) 83, 408
EarI CTCTTC 2 cut(s) 83, 408
Eco130I CCWWGG 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 80
Eco57I CTGAAG 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaiI YATR 2 cut(s) 42, 357
FaqI GGGAC 1 cut(s) 372
FauI CCCGC 1 cut(s) 398
Fnu4HI GCNGC 2 cut(s) 222, 348
FokI GGATG 1 cut(s) 226
Fsp4HI GCNGC 2 cut(s) 222, 348
FspBI CTAG 1 cut(s) 447
GlaI GCGC 1 cut(s) 311
GluI GCNGC 2 cut(s) 222, 348
HhaI GCGC 1 cut(s) 312
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 2 cut(s) 234, 454
Hpy188I TCNGA 3 cut(s) 133, 211, 534
Hpy188III TCNNGA 8 cut(s) 118, 200, 231, 288, 367, 377, 460, 550
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4IV ACGT 2 cut(s) 37, 144
HpyCH4V TGCA 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 478
HpySE526I ACGT 2 cut(s) 37, 144
HspAI GCGC 1 cut(s) 310
Kzo9I GATC 7 cut(s) 206, 225, 274, 369, 379, 462, 546
LpnPI CCDG 7 cut(s) 152, 189, 256, 397, 495, 522, 535
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 1 cut(s) 162
MaeI CTAG 1 cut(s) 447
MaeII ACGT 2 cut(s) 37, 144
MalI GATC 7 cut(s) 208, 227, 276, 371, 381, 464, 548
MbiI CCGCTC 1 cut(s) 481
MboI GATC 7 cut(s) 206, 225, 274, 369, 379, 462, 546
MboII GAAGA 6 cut(s) 8, 70, 148, 224, 395, 398
MluCI AATT 3 cut(s) 6, 280, 497
MnlI CCTC 2 cut(s) 183, 353
MspR9I CCNGG 1 cut(s) 510
MvaI CCWGG 1 cut(s) 510
MwoI GCNNNNNNNGC 2 cut(s) 347, 478
NdeII GATC 7 cut(s) 206, 225, 274, 369, 379, 462, 546
PfeI GAWTC 2 cut(s) 234, 454
PkrI GCNGC 2 cut(s) 223, 349
Psp1406I AACGTT 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 508
PspGI CCWGG 1 cut(s) 508
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SatI GCNGC 2 cut(s) 222, 348
Sau3AI GATC 7 cut(s) 206, 225, 274, 369, 379, 462, 546
ScrFI CCNGG 1 cut(s) 510
SetI ASST 5 cut(s) 40, 147, 178, 198, 494
SfaNI GCATC 1 cut(s) 162
SmlI CTYRAG 3 cut(s) 116, 229, 286
SmoI CTYRAG 3 cut(s) 116, 229, 286
Sse9I AATT 3 cut(s) 6, 280, 497
SsiI CCGC 3 cut(s) 348, 391, 479
SspMI CTAG 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 508
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 71
TaiI ACGT 2 cut(s) 40, 147
TaqI TCGA 8 cut(s) 273, 335, 368, 441, 465, 475, 483, 521
TaqII GACCGA 1 cut(s) 219
TasI AATT 3 cut(s) 6, 280, 497
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 2 cut(s) 234, 454
TscAI CASTG 2 cut(s) 174, 312
TseI GCWGC 1 cut(s) 221
TspDTI ATGAA 1 cut(s) 291
TspRI CASTG 2 cut(s) 174, 312
XapI RAATTY 1 cut(s) 497
XspI CTAG 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.