MD11G1250700.v1.1

MATE efflux family protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
36276069 .. 36278581
2513 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1250700.v1.1.491

Sequence Viewer

Length: 1524 bp
ATGTTTCAACTTTCAAGTGCAAATATATCAATTGATTTGTTATTGCGTTGCCGTGGGAATGGAGAAGAAGGATCAAAAGGAAGGTGGTGGAACAAACTGGTAGATGTTGAGGAGGCCAAAAAACAGATTTTCTTTTCATTGCCAACAATCCTCACCAATGTGTTCTTTTCCTTGATCCCATTGGTCTCGGTCATGTTTGCTGGCCACCTTGGTGAGCTTCAGTTAGCTGGCGCAACCCTAGCCAATTCATGGGCCAATGTTACTGGTTTTGCTTTCGTGGTTGGGCTGAGTGGAGCTCTTGAAACACTTTGCGGGCAAGGCTTTGGTGCAAAATTGTATAGAACGTTGGGAATTTATCTACAAGCTTCTTGCATCATATCGACCCTCTTCTGTTTCTTGATATCTATAATCTGGCTCTATACAGAGTCTATACTAATTTTACTTCACCAAGATCCTCATATTTCAAAATCTGCAGCACTTTTTTTGAAATTTTTGATCCCCGGATTATTCGCTTATGCTTTCCTGCAAAACATGTTGAGATTTCTTCAGACACAATCTATATATGTAACGCCAATGGTCTTCTCAGTGATTGTCATTGTTATTCATATTGGCATCACATATGGTTTTGTGCATTGGACAACTCTTGGTTTTAAGGGAGCTCCACTAGCAGCTTCAGTTTCACTATGGATATCTGTTCTCATGCTGGCTTTCACTGTTAATTGTACAAAGAGCTTTGAGAGCACATGGGAAGGATTTTCATTCGAATCTTTCGATTATGTCCTCACGGGCTTGAAACTGGCCCTTCCCTCTGCAACAATGGAATGTTTGGAGGAATGGGCTTTTGAGATTCTGGTGTTCATGGGAGGATTGATGCCAAACTCAGCAAAAAACACTTCACTGCTTGCCATGTGTGTGAATACGCAAGAAATTGGTTACATGGTTACATATGGCCTCAGTGCCGCTGCCAGCACAAGAGTGTCAAATGAATTAGGAGCAGGCAATCCGGACAGAGCTAAGAATGCAATGGTTGTCAATCTTAAGCTCTCTGTGCTTCTTTCTTTTGCAATTATTCTGGCTCTTGTGTGTGGTCACAACATTTGGGCTGGCTTCTTCATTGACAGCAACGCGAATTACGCGGTACTGAAAGAGGACTTTGCATCAATGACACCATTGCTTGCAATTTCAATAATAGTTGATTCTGTTCAAGGTGTCTTTTCAGGTGTGGCTAGAGGATGTGGGTGGCAACACTTAGTTGTGTACGTAAACTTGGCAACATTTTACTTCGTTGGTATGACAATTGCTGTTTTGCTTGGATTTAAGTTCAAACTTTATGCCAAGGGCTTGTGGATTGGTATAATCTGTGGTCTCTCCTGCCAAGCAAGCACGCTTTTGTTGATTACATTGCTCAAGAAATGGACTCAATCAGATTTACTTAAAAATCCAGAGCAGGAAGCACCAGTTTTGGTCTCAATTGATGTTAGCGAAAGAAATACAAACATAGACCACTTGGGAAAATCCAGTTGA

Protein Analysis

508

Amino Acids

55.48

Weight (kDa)

6.7

Isoelectric Point (pI)

29.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 48 - 207 1.2e-31 MatE
MatE PF01554 269 - 435 1.1e-23 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000715)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 249
AccII CGCG 2 cut(s) 1127, 1136
AccIII TCCGGA 1 cut(s) 1003
AciI CCGC 3 cut(s) 312, 960, 1136
AclI AACGTT 1 cut(s) 344
AclWI GGATC 4 cut(s) 79, 169, 446, 490
AcoI YGGCCR 1 cut(s) 202
AcsI RAATTY 2 cut(s) 351, 488
AcuI CTGAAG 3 cut(s) 203, 530, 657
AfaI GTAC 3 cut(s) 724, 1140, 1259
AfiI CCNNNNNNNGG 1 cut(s) 249
AflII CTTAAG 1 cut(s) 1037
AflIII ACRYGT 1 cut(s) 531
AgsI TTSAA 9 cut(s) 8, 15, 302, 465, 487, 793, 1185, 1205, 1324
AleI CACNNNNGTG 3 cut(s) 158, 210, 974
AluBI AGCT 9 cut(s) 217, 227, 296, 365, 659, 671, 732, 1013, 1042
AluI AGCT 9 cut(s) 217, 227, 296, 365, 659, 671, 732, 1013, 1042
Alw21I GWGCWC 3 cut(s) 298, 661, 743
Alw26I GTCTC 3 cut(s) 190, 1370, 1471
AlwI GGATC 4 cut(s) 79, 169, 446, 490
Aor13HI TCCGGA 1 cut(s) 1003
AoxI GGCC 5 cut(s) 114, 202, 252, 798, 949
ApeKI GCWGC 3 cut(s) 473, 668, 962
ApoI RAATTY 2 cut(s) 351, 488
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 2 cut(s) 252, 799
AsuC2I CCSGG 1 cut(s) 501
AsuHPI GGTGA 3 cut(s) 145, 224, 437
AsuII TTCGAA 1 cut(s) 762
BalI TGGCCA 1 cut(s) 204
BanII GRGCYC 2 cut(s) 298, 661
BbsI GAAGAC 1 cut(s) 571
Bbv12I GWGCWC 3 cut(s) 298, 661, 743
BbvI GCAGC 3 cut(s) 485, 680, 949
BceAI ACGGC 1 cut(s) 36
BcnI CCSGG 1 cut(s) 501
BcoDI GTCTC 3 cut(s) 190, 1370, 1471
BfaI CTAG 3 cut(s) 239, 665, 1227
BfmI CTRYAG 1 cut(s) 471
BfrI CTTAAG 1 cut(s) 1037
BisI GCNGC 4 cut(s) 474, 669, 960, 963
BlsI GCNGC 4 cut(s) 475, 670, 961, 964
Bme1390I CCNGG 1 cut(s) 501
BmgT120I GGNCC 2 cut(s) 252, 799
BmrFI CCNGG 1 cut(s) 501
BmsI GCATC 4 cut(s) 381, 621, 861, 1166
BpiI GAAGAC 1 cut(s) 571
BplI GAGNNNNNCTC 2 cut(s) 280, 312
Bpu14I TTCGAA 1 cut(s) 762
BpuEI CTTGAG 1 cut(s) 1391
BpuMI CCSGG 1 cut(s) 501
BsaAI YACGTR 1 cut(s) 1261
BsaI GGTCTC 3 cut(s) 190, 1370, 1471
BsaJI CCNNGG 4 cut(s) 52, 208, 499, 1335
BsaWI WCCGGW 1 cut(s) 1003
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse1I ACTGG 5 cut(s) 102, 268, 801, 1457, 1518
Bse3DI GCAATG 4 cut(s) 137, 1029, 1169, 1400
BseAI TCCGGA 1 cut(s) 1003
BseDI CCNNGG 4 cut(s) 52, 208, 499, 1335
BseGI GGATG 1 cut(s) 1238
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMI GCAATG 4 cut(s) 137, 1029, 1169, 1400
BseMII CTCAG 4 cut(s) 278, 597, 894, 967
BseNI ACTGG 5 cut(s) 102, 268, 801, 1457, 1518
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 3 cut(s) 485, 680, 949
Bsh1236I CGCG 2 cut(s) 1127, 1136
BshFI GGCC 5 cut(s) 116, 204, 254, 800, 951
BsiHKAI GWGCWC 3 cut(s) 298, 661, 743
BsiSI CCGG 2 cut(s) 501, 1004
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 3 cut(s) 190, 1370, 1471
BsmI GAATGC 1 cut(s) 1024
BsnI GGCC 5 cut(s) 116, 204, 254, 800, 951
Bso31I GGTCTC 3 cut(s) 190, 1370, 1471
Bsp119I TTCGAA 1 cut(s) 762
Bsp1286I GDGCHC 3 cut(s) 298, 661, 743
Bsp13I TCCGGA 1 cut(s) 1003
Bsp1407I TGTACA 1 cut(s) 722
Bsp143I GATC 4 cut(s) 71, 174, 451, 495
BspACI CCGC 3 cut(s) 312, 960, 1136
BspANI GGCC 5 cut(s) 116, 204, 254, 800, 951
BspCNI CTCAG 4 cut(s) 279, 596, 893, 966
BspEI TCCGGA 1 cut(s) 1003
BspFNI CGCG 2 cut(s) 1127, 1136
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 4 cut(s) 79, 169, 446, 490
BspT104I TTCGAA 1 cut(s) 762
BspTI CTTAAG 1 cut(s) 1037
BspTNI GGTCTC 3 cut(s) 190, 1370, 1471
BsrDI GCAATG 4 cut(s) 137, 1029, 1169, 1400
BsrGI TGTACA 1 cut(s) 722
BsrI ACTGG 5 cut(s) 102, 268, 801, 1457, 1518
BssECI CCNNGG 4 cut(s) 52, 208, 499, 1335
BssMI GATC 4 cut(s) 71, 174, 451, 495
BssT1I CCWWGG 2 cut(s) 208, 1335
Bst4CI ACNGT 1 cut(s) 715
Bst6I CTCTTC 1 cut(s) 392
BstAFI CTTAAG 1 cut(s) 1037
BstAUI TGTACA 1 cut(s) 722
BstBAI YACGTR 1 cut(s) 1261
BstBI TTCGAA 1 cut(s) 762
BstDEI CTNAG 6 cut(s) 287, 583, 880, 953, 1014, 1249
BstDSI CCRYGG 1 cut(s) 52
BstF5I GGATG 1 cut(s) 1238
BstFNI CGCG 2 cut(s) 1127, 1136
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 4 cut(s) 74, 177, 454, 498
BstMAI GTCTC 3 cut(s) 190, 1370, 1471
BstMBI GATC 4 cut(s) 71, 174, 451, 495
BstMWI GCNNNNNNNGC 8 cut(s) 239, 318, 665, 738, 1019, 1048, 1133, 1380
BstNSI RCATGY 1 cut(s) 535
BstSCI CCNGG 1 cut(s) 499
BstSFI CTRYAG 1 cut(s) 471
BstSNI TACGTA 1 cut(s) 1261
BstUI CGCG 2 cut(s) 1127, 1136
BstV1I GCAGC 3 cut(s) 485, 680, 949
BstV2I GAAGAC 1 cut(s) 571
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BsuRI GGCC 5 cut(s) 116, 204, 254, 800, 951
BtgI CCRYGG 1 cut(s) 52
BtsCI GGATG 1 cut(s) 1238
BtsI GCAGTG 1 cut(s) 896
BtsIMutI CAGTG 4 cut(s) 591, 711, 896, 961
CfoI GCGC 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 252, 799
Csp6I GTAC 3 cut(s) 723, 1139, 1258
CviAII CATG 8 cut(s) 193, 249, 532, 700, 744, 859, 907, 937
CviQI GTAC 3 cut(s) 723, 1139, 1258
DdeI CTNAG 6 cut(s) 287, 583, 880, 953, 1014, 1249
DpnI GATC 4 cut(s) 73, 176, 453, 497
DpnII GATC 4 cut(s) 71, 174, 451, 495
EaeI YGGCCR 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
Ecl136II GAGCTC 2 cut(s) 296, 659
Eco105I TACGTA 1 cut(s) 1261
Eco130I CCWWGG 2 cut(s) 208, 1335
Eco24I GRGCYC 2 cut(s) 298, 661
Eco31I GGTCTC 3 cut(s) 190, 1370, 1471
Eco32I GATATC 2 cut(s) 402, 690
Eco53kI GAGCTC 2 cut(s) 296, 659
Eco57I CTGAAG 3 cut(s) 203, 530, 657
EcoICRI GAGCTC 2 cut(s) 296, 659
EcoRV GATATC 2 cut(s) 402, 690
EcoT14I CCWWGG 2 cut(s) 208, 1335
EcoT38I GRGCYC 2 cut(s) 298, 661
ErhI CCWWGG 2 cut(s) 208, 1335
FaeI CATG 8 cut(s) 196, 252, 535, 703, 747, 862, 910, 940
FatI CATG 8 cut(s) 192, 248, 531, 699, 743, 858, 906, 936
FauI CCCGC 1 cut(s) 305
FauNDI CATATG 2 cut(s) 619, 946
Fnu4HI GCNGC 4 cut(s) 474, 669, 960, 963
FokI GGATG 1 cut(s) 1245
FriOI GRGCYC 2 cut(s) 298, 661
Fsp4HI GCNGC 4 cut(s) 474, 669, 960, 963
FspBI CTAG 3 cut(s) 239, 665, 1227
GlaI GCGC 1 cut(s) 232
GluI GCNGC 4 cut(s) 474, 669, 960, 963
HaeIII GGCC 5 cut(s) 116, 204, 254, 800, 951
HapII CCGG 2 cut(s) 501, 1004
HhaI GCGC 1 cut(s) 233
Hin1II CATG 8 cut(s) 196, 252, 535, 703, 747, 862, 910, 940
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HindIII AAGCTT 1 cut(s) 363
HinfI GANTC 5 cut(s) 425, 764, 847, 1196, 1417
HpaII CCGG 2 cut(s) 501, 1004
HphI GGTGA 3 cut(s) 145, 224, 437
Hpy166II GTNNAC 2 cut(s) 1258, 1264
Hpy188I TCNGA 2 cut(s) 549, 1426
Hpy188III TCNNGA 5 cut(s) 299, 397, 1004, 1408, 1442
Hpy8I GTNNAC 2 cut(s) 1258, 1264
HpyAV CCTTC 4 cut(s) 62, 75, 743, 812
HpyCH4III ACNGT 1 cut(s) 715
HpyCH4IV ACGT 2 cut(s) 344, 1260
HpyF10VI GCNNNNNNNGC 8 cut(s) 239, 318, 665, 738, 1019, 1048, 1133, 1380
HpyF3I CTNAG 6 cut(s) 287, 583, 880, 953, 1014, 1249
HpySE526I ACGT 2 cut(s) 344, 1260
Hsp92II CATG 8 cut(s) 196, 252, 535, 703, 747, 862, 910, 940
HspAI GCGC 1 cut(s) 231
Kpn2I TCCGGA 1 cut(s) 1003
Kzo9I GATC 4 cut(s) 71, 174, 451, 495
LmnI GCTCC 4 cut(s) 293, 656, 664, 992
Lsp1109I GCAGC 3 cut(s) 485, 680, 949
LweI GCATC 4 cut(s) 381, 621, 861, 1166
MaeI CTAG 3 cut(s) 239, 665, 1227
MaeII ACGT 2 cut(s) 344, 1260
MaeIII GTNAC 5 cut(s) 259, 565, 932, 940, 1088
MalI GATC 4 cut(s) 73, 176, 453, 497
MboI GATC 4 cut(s) 71, 174, 451, 495
MboII GAAGA 5 cut(s) 77, 379, 536, 571, 1102
MfeI CAATTG 3 cut(s) 30, 1296, 1470
MflI RGATCY 1 cut(s) 451
MhlI GDGCHC 3 cut(s) 298, 661, 743
MlsI TGGCCA 1 cut(s) 204
MluNI TGGCCA 1 cut(s) 204
MlyI GAGTC 2 cut(s) 434, 1411
Mox20I TGGCCA 1 cut(s) 204
MroI TCCGGA 1 cut(s) 1003
MscI TGGCCA 1 cut(s) 204
MseI TTAA 5 cut(s) 651, 717, 1038, 1317, 1434
MslI CAYNNNNRTG 4 cut(s) 158, 210, 911, 974
Msp20I TGGCCA 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 962
MspCI CTTAAG 1 cut(s) 1037
MspI CCGG 2 cut(s) 501, 1004
MspR9I CCNGG 1 cut(s) 501
MunI CAATTG 3 cut(s) 30, 1296, 1470
Mva1269I GAATGC 1 cut(s) 1024
MvnI CGCG 2 cut(s) 1127, 1136
MwoI GCNNNNNNNGC 8 cut(s) 239, 318, 665, 738, 1019, 1048, 1133, 1380
NciI CCSGG 1 cut(s) 501
NdeI CATATG 2 cut(s) 619, 946
NdeII GATC 4 cut(s) 71, 174, 451, 495
NlaIII CATG 8 cut(s) 196, 252, 535, 703, 747, 862, 910, 940
NmuCI GTSAC 1 cut(s) 1088
NspI RCATGY 1 cut(s) 535
NspV TTCGAA 1 cut(s) 762
OliI CACNNNNGTG 3 cut(s) 158, 210, 974
PciI ACATGT 1 cut(s) 531
PcsI WCGNNNNNNNCGW 1 cut(s) 768
PctI GAATGC 1 cut(s) 1024
PfeI GAWTC 3 cut(s) 764, 847, 1196
PflMI CCANNNNNTGG 1 cut(s) 249
PkrI GCNGC 4 cut(s) 475, 670, 961, 964
PleI GAGTC 2 cut(s) 433, 1411
PpsI GAGTC 2 cut(s) 433, 1411
Ppu21I YACGTR 1 cut(s) 1261
PscI ACATGT 1 cut(s) 531
Psp124BI GAGCTC 2 cut(s) 298, 661
Psp1406I AACGTT 1 cut(s) 344
PspPI GGNCC 2 cut(s) 252, 799
PstI CTGCAG 1 cut(s) 475
PsuI RGATCY 1 cut(s) 451
RsaI GTAC 3 cut(s) 724, 1140, 1259
RsaNI GTAC 3 cut(s) 723, 1139, 1258
RseI CAYNNNNRTG 4 cut(s) 158, 210, 911, 974
SacI GAGCTC 2 cut(s) 298, 661
SaqAI TTAA 5 cut(s) 651, 717, 1038, 1317, 1434
SatI GCNGC 4 cut(s) 474, 669, 960, 963
Sau3AI GATC 4 cut(s) 71, 174, 451, 495
Sau96I GGNCC 2 cut(s) 252, 799
SchI GAGTC 2 cut(s) 434, 1411
ScrFI CCNGG 1 cut(s) 501
SduI GDGCHC 3 cut(s) 298, 661, 743
SfaNI GCATC 4 cut(s) 381, 621, 861, 1166
SfcI CTRYAG 1 cut(s) 471
SfuI TTCGAA 1 cut(s) 762
SmiMI CAYNNNNRTG 4 cut(s) 158, 210, 911, 974
SmlI CTYRAG 2 cut(s) 1037, 1406
SmoI CTYRAG 2 cut(s) 1037, 1406
SnaBI TACGTA 1 cut(s) 1261
SsiI CCGC 3 cut(s) 312, 960, 1136
SspMI CTAG 3 cut(s) 239, 665, 1227
SstI GAGCTC 2 cut(s) 298, 661
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 2 cut(s) 208, 1335
TaaI ACNGT 1 cut(s) 715
TaiI ACGT 2 cut(s) 347, 1263
TaqI TCGA 3 cut(s) 380, 762, 771
TaqII GACCGA 1 cut(s) 178
TatI WGTACW 1 cut(s) 722
TauI GCSGC 1 cut(s) 962
TfiI GAWTC 3 cut(s) 764, 847, 1196
Tru1I TTAA 5 cut(s) 651, 717, 1038, 1317, 1434
Tru9I TTAA 5 cut(s) 651, 717, 1038, 1317, 1434
TscAI CASTG 4 cut(s) 591, 718, 903, 961
TseFI GTSAC 1 cut(s) 1088
TseI GCWGC 3 cut(s) 473, 668, 962
Tsp45I GTSAC 1 cut(s) 1088
TspDTI ATGAA 7 cut(s) 126, 237, 593, 747, 847, 999, 1102
TspRI CASTG 4 cut(s) 591, 718, 903, 961
Van91I CCANNNNNTGG 1 cut(s) 249
Vha464I CTTAAG 1 cut(s) 1037
XapI RAATTY 2 cut(s) 351, 488
XceI RCATGY 1 cut(s) 535
XspI CTAG 3 cut(s) 239, 665, 1227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.