Prupe.4G178900_v2.0.a1

MATE efflux family protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
10608758 .. 10612072
3315 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G178900.2

Sequence Viewer

Length: 1593 bp
ATGGAGATGTTAGCAGATTCCGAAAGTTCAGATAGATACATTACTACAGCCTTATTAGAGGCAGATAGTCATGGAGAAGAAGAAGGAACACAAAGAAACAGGCGGTCATGGAAGAAAGTGTACTTGGACGTGTTCGAGGCAAAAAAACAGGTTCCGGAGAAAATGATCGCTGAAGATGGGCTTGGAGAAGAAGGATCAAAAAGAAGGTGGTGGAACAAACTGTTAGACGTTGAGGAGGCCAAAGTACAGGTCTACTTTTCACTGCCAACAATTCTCACCAATGTGTTCTTCTCCTTGATCCCATTGGTCTCAGTCATGTTTGCTGGCCACTTTGGTGAGCTTCAGTTGGCTGGTGCAACTCTGGCCAATTCATGGGCCAACGTTACCGGTTTTGCGTTCGTGGTTGGGTTAAGTGGAGCTCTTGAGACACTTTGCGGGCAAGGCTTTGGTGCAAAGTCGTACAGAATGTTGGGGATTTATCTACAAGCTTCTTGCATCGTATCTTTCCTCTTCTGTTTCATGATATCTATAATCTGGTTCTATACAGAGCCCATACTAATTTTACTCCATCAAGATCCTCAAATTTCAAAATGTGCTGCTCTTTTTTTGAAATTTCTGTTCCCCGGACTATTTGCATATGGATTCCTCCAAAACATCTTGAGATTTCATCAGACACAATCTGTATATGTCATGCCAATGGTCTTCTCAGGGATTGCCTTTGTTATTCATATTGGCATTACTTATGTTTTGGTGCATTGGACGGCTCTTGGTTTCAAGGGAGCTCCACTTGCAGCCTCAATTTCTCTCTGGATATCTGTTCTTATGATGGCCTTCAATGTTAATTATACAAAGAGTTTTGAGCGTACATGGGAAGGATTTTCGATAGAATCGTTCAATCATATCCTCACCGGCTTAAAATTTGCCCTCCCCTCTGCAACAATGGAATGTTTGGAGGAATGGGCTTTTGAGATTCTTGTGTTCATGGGAGGACTGATGCCAAACTCAGCAAAAACCACTTCACTACTTGCAATCTGTGTGAATACACAAGAAATTGGTTACATGGTTACATCTGGCCTCAGTGCTGCAGCCAGCACAAGAGTGTCAAATGAATTAGGATCAGGCAATCCAGGCAGAGCTAAGAATGCAATGGTTGTGACTCTTAAGCTCTCTGTGCTTCTTTCTTTCGCGATTATTCTGGCCCTTGCATTTGGTCACAATGTTTGGGCTGGCTTCTTCATTGACAGCAATGCAAGTTATGCAGTATTGAGAGAGGACTTTGCTTCAATGACACCATTGCTTGCAATTTCTATAATTGTTGATTCTGTTCAAGGAGTCTTTTCAGGTGTGGCTAGAGGATGTGGGTGGCAACACTTGGCTGTGTATGTAAATTTGGCAACTTTTTATTTGATTGGTATGACAATTGCTGGTCTTCTTGGATTTAAGTTCAAACTATATGCCAAGGGCTTGTGGATTGGTATAATCTGCGGTCTCTCCTTTCAAGCAAGCACACTCATGCTGATTACACTGCTCAAGAAATGGACTCAATCAGATTCATCTAAACATCCAGAGGAAGGAAGCCCAGTTTTGGTCTAG

Protein Analysis

531

Amino Acids

58.4

Weight (kDa)

6.38

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000715)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 372
AccI GTMKAC 1 cut(s) 252
AccII CGCG 1 cut(s) 1187
AccIII TCCGGA 1 cut(s) 154
AciI CCGC 3 cut(s) 103, 435, 1485
AclI AACGTT 1 cut(s) 381
AclWI GGATC 4 cut(s) 202, 292, 569, 1123
AcoI YGGCCR 2 cut(s) 325, 363
AcsI RAATTY 4 cut(s) 582, 611, 917, 1387
AcuI CTGAAG 2 cut(s) 192, 326
AfaI GTAC 4 cut(s) 122, 246, 461, 865
AfiI CCNNNNNNNGG 3 cut(s) 372, 1571, 1585
AflII CTTAAG 1 cut(s) 1160
AflIII ACRYGT 1 cut(s) 129
AgeI ACCGGT 1 cut(s) 386
AgsI TTSAA 9 cut(s) 588, 610, 775, 835, 895, 1284, 1328, 1447, 1499
AjiI CACGTC 1 cut(s) 130
AjnI CCWGG 1 cut(s) 1126
AjuI GAANNNNNNNTTGG 6 cut(s) 107, 139, 165, 197, 272, 304
AleI CACNNNNGTG 3 cut(s) 281, 333, 1097
AluBI AGCT 6 cut(s) 340, 419, 488, 782, 1136, 1165
AluI AGCT 6 cut(s) 340, 419, 488, 782, 1136, 1165
Alw21I GWGCWC 2 cut(s) 421, 784
Alw26I GTCTC 3 cut(s) 313, 419, 1493
AlwI GGATC 4 cut(s) 202, 292, 569, 1123
Aor13HI TCCGGA 1 cut(s) 154
AoxI GGCC 7 cut(s) 237, 325, 363, 375, 828, 1072, 1197
ApeKI GCWGC 4 cut(s) 596, 791, 1082, 1085
ApoI RAATTY 4 cut(s) 582, 611, 917, 1387
ArsI GACNNNNNNTTYG 2 cut(s) 234, 266
AsiGI ACCGGT 1 cut(s) 386
AspS9I GGNCC 2 cut(s) 375, 1198
AsuC2I CCSGG 1 cut(s) 624
AsuHPI GGTGA 3 cut(s) 268, 347, 898
BalI TGGCCA 2 cut(s) 327, 365
BanII GRGCYC 3 cut(s) 421, 552, 784
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
BbsI GAAGAC 2 cut(s) 694, 1421
Bbv12I GWGCWC 2 cut(s) 421, 784
BbvI GCAGC 4 cut(s) 583, 803, 1069, 1097
BccI CCATC 3 cut(s) 170, 576, 820
BceAI ACGGC 1 cut(s) 777
BciT130I CCWGG 1 cut(s) 1128
BcnI CCSGG 1 cut(s) 624
BcoDI GTCTC 3 cut(s) 313, 419, 1493
BfaI CTAG 2 cut(s) 1350, 1591
BfmI CTRYAG 2 cut(s) 45, 1083
BfrI CTTAAG 1 cut(s) 1160
BisI GCNGC 4 cut(s) 597, 792, 1083, 1086
BlsI GCNGC 4 cut(s) 598, 793, 1084, 1087
Bme1390I CCNGG 2 cut(s) 624, 1128
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 375, 1198
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 2 cut(s) 624, 1128
BmrI ACTGGG 1 cut(s) 1574
BmsI GCATC 2 cut(s) 504, 984
BmuI ACTGGG 1 cut(s) 1574
BpiI GAAGAC 2 cut(s) 694, 1421
BpuEI CTTGAG 3 cut(s) 443, 679, 1514
BpuMI CCSGG 1 cut(s) 624
BsaI GGTCTC 2 cut(s) 313, 1493
BsaJI CCNNGG 2 cut(s) 622, 1458
BsaWI WCCGGW 2 cut(s) 154, 386
Bsc4I CCNNNNNNNGG 3 cut(s) 372, 1571, 1585
Bse118I RCCGGY 2 cut(s) 386, 908
Bse1I ACTGG 1 cut(s) 1580
Bse3DI GCAATG 3 cut(s) 1152, 1252, 1292
BseAI TCCGGA 1 cut(s) 154
BseBI CCWGG 1 cut(s) 1128
BseDI CCNNGG 2 cut(s) 622, 1458
BseGI GGATG 2 cut(s) 1361, 1561
BseLI CCNNNNNNNGG 3 cut(s) 372, 1571, 1585
BseMI GCAATG 3 cut(s) 1152, 1252, 1292
BseMII CTCAG 4 cut(s) 324, 720, 1017, 1090
BseNI ACTGG 1 cut(s) 1580
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 4 cut(s) 583, 803, 1069, 1097
Bsh1236I CGCG 1 cut(s) 1187
BshFI GGCC 7 cut(s) 239, 327, 365, 377, 830, 1074, 1199
BshTI ACCGGT 1 cut(s) 386
BsiHKAI GWGCWC 2 cut(s) 421, 784
BsiSI CCGG 4 cut(s) 155, 387, 624, 909
BslI CCNNNNNNNGG 3 cut(s) 372, 1571, 1585
BsmAI GTCTC 3 cut(s) 313, 419, 1493
BsmI GAATGC 1 cut(s) 1147
BsnI GGCC 7 cut(s) 239, 327, 365, 377, 830, 1074, 1199
Bso31I GGTCTC 2 cut(s) 313, 1493
Bsp1286I GDGCHC 3 cut(s) 421, 552, 784
Bsp13I TCCGGA 1 cut(s) 154
Bsp143I GATC 5 cut(s) 165, 194, 297, 574, 1115
Bsp68I TCGCGA 1 cut(s) 1187
BspACI CCGC 3 cut(s) 103, 435, 1485
BspANI GGCC 7 cut(s) 239, 327, 365, 377, 830, 1074, 1199
BspCNI CTCAG 4 cut(s) 323, 719, 1016, 1089
BspEI TCCGGA 1 cut(s) 154
BspFNI CGCG 1 cut(s) 1187
BspHI TCATGA 1 cut(s) 519
BspLI GGNNCC 1 cut(s) 153
BspMAI CTGCAG 1 cut(s) 1087
BspPI GGATC 4 cut(s) 202, 292, 569, 1123
BspTI CTTAAG 1 cut(s) 1160
BspTNI GGTCTC 2 cut(s) 313, 1493
BsrDI GCAATG 3 cut(s) 1152, 1252, 1292
BsrFI RCCGGY 2 cut(s) 386, 908
BsrI ACTGG 1 cut(s) 1580
BssAI RCCGGY 2 cut(s) 386, 908
BssECI CCNNGG 2 cut(s) 622, 1458
BssMI GATC 5 cut(s) 165, 194, 297, 574, 1115
BssT1I CCWWGG 1 cut(s) 1458
Bst2UI CCWGG 1 cut(s) 1128
Bst4CI ACNGT 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 515
BstAFI CTTAAG 1 cut(s) 1160
BstAPI GCANNNNNTGC 1 cut(s) 1256
BstC8I GCNNGC 6 cut(s) 325, 437, 1090, 1228, 1299, 1504
BstDEI CTNAG 5 cut(s) 310, 706, 1003, 1076, 1137
BstF5I GGATG 2 cut(s) 1361, 1561
BstFNI CGCG 1 cut(s) 1187
BstKTI GATC 5 cut(s) 168, 197, 300, 577, 1118
BstMAI GTCTC 3 cut(s) 313, 419, 1493
BstMBI GATC 5 cut(s) 165, 194, 297, 574, 1115
BstMWI GCNNNNNNNGC 7 cut(s) 362, 441, 788, 1128, 1142, 1171, 1256
BstNI CCWGG 1 cut(s) 1128
BstSCI CCNGG 2 cut(s) 622, 1126
BstSFI CTRYAG 2 cut(s) 45, 1083
BstUI CGCG 1 cut(s) 1187
BstV1I GCAGC 4 cut(s) 583, 803, 1069, 1097
BstV2I GAAGAC 2 cut(s) 694, 1421
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
BsuRI GGCC 7 cut(s) 239, 327, 365, 377, 830, 1074, 1199
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 2 cut(s) 1361, 1561
BtsI GCAGTG 2 cut(s) 260, 1523
BtsIMutI CAGTG 3 cut(s) 260, 1084, 1523
BtuMI TCGCGA 1 cut(s) 1187
Cac8I GCNNGC 6 cut(s) 325, 437, 1090, 1228, 1299, 1504
CciI TCATGA 1 cut(s) 519
Cfr10I RCCGGY 2 cut(s) 386, 908
Cfr13I GGNCC 2 cut(s) 375, 1198
Csp6I GTAC 4 cut(s) 121, 245, 460, 864
CspAI ACCGGT 1 cut(s) 386
CviQI GTAC 4 cut(s) 121, 245, 460, 864
DdeI CTNAG 5 cut(s) 310, 706, 1003, 1076, 1137
DpnI GATC 5 cut(s) 167, 196, 299, 576, 1117
DpnII GATC 5 cut(s) 165, 194, 297, 574, 1115
EaeI YGGCCR 2 cut(s) 325, 363
Eam1104I CTCTTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 515
Ecl136II GAGCTC 2 cut(s) 419, 782
Eco130I CCWWGG 1 cut(s) 1458
Eco24I GRGCYC 3 cut(s) 421, 552, 784
Eco31I GGTCTC 2 cut(s) 313, 1493
Eco32I GATATC 2 cut(s) 525, 813
Eco53kI GAGCTC 2 cut(s) 419, 782
Eco57I CTGAAG 2 cut(s) 192, 326
EcoICRI GAGCTC 2 cut(s) 419, 782
EcoRII CCWGG 1 cut(s) 1126
EcoRV GATATC 2 cut(s) 525, 813
EcoT14I CCWWGG 1 cut(s) 1458
EcoT38I GRGCYC 3 cut(s) 421, 552, 784
ErhI CCWWGG 1 cut(s) 1458
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FauI CCCGC 1 cut(s) 428
FauNDI CATATG 1 cut(s) 637
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 4 cut(s) 597, 792, 1083, 1086
FokI GGATG 2 cut(s) 1368, 1548
FriOI GRGCYC 3 cut(s) 421, 552, 784
Fsp4HI GCNGC 4 cut(s) 597, 792, 1083, 1086
FspBI CTAG 2 cut(s) 1350, 1591
GluI GCNGC 4 cut(s) 597, 792, 1083, 1086
HaeIII GGCC 7 cut(s) 239, 327, 365, 377, 830, 1074, 1199
HapII CCGG 4 cut(s) 155, 387, 624, 909
HindIII AAGCTT 1 cut(s) 486
HinfI GANTC 9 cut(s) 17, 642, 887, 970, 1156, 1319, 1332, 1540, 1550
HpaII CCGG 4 cut(s) 155, 387, 624, 909
HphI GGTGA 3 cut(s) 268, 347, 898
Hpy166II GTNNAC 2 cut(s) 121, 253
Hpy188I TCNGA 4 cut(s) 22, 31, 672, 1549
Hpy188III TCNNGA 9 cut(s) 155, 422, 520, 572, 658, 808, 1186, 1531, 1565
Hpy8I GTNNAC 2 cut(s) 121, 253
HpyAV CCTTC 6 cut(s) 77, 185, 198, 841, 866, 1565
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4IV ACGT 3 cut(s) 129, 228, 381
HpyF10VI GCNNNNNNNGC 7 cut(s) 362, 441, 788, 1128, 1142, 1171, 1256
HpyF3I CTNAG 5 cut(s) 310, 706, 1003, 1076, 1137
HpySE526I ACGT 3 cut(s) 129, 228, 381
Kpn2I TCCGGA 1 cut(s) 154
Kzo9I GATC 5 cut(s) 165, 194, 297, 574, 1115
LmnI GCTCC 3 cut(s) 416, 779, 787
Lsp1109I GCAGC 4 cut(s) 583, 803, 1069, 1097
LweI GCATC 2 cut(s) 504, 984
MaeI CTAG 2 cut(s) 1350, 1591
MaeII ACGT 3 cut(s) 129, 228, 381
MaeIII GTNAC 5 cut(s) 382, 1055, 1063, 1153, 1211
MalI GATC 5 cut(s) 167, 196, 299, 576, 1117
MboI GATC 5 cut(s) 165, 194, 297, 574, 1115
MfeI CAATTG 1 cut(s) 1419
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 3 cut(s) 421, 552, 784
MlsI TGGCCA 2 cut(s) 327, 365
MluNI TGGCCA 2 cut(s) 327, 365
MlyI GAGTC 3 cut(s) 1150, 1341, 1534
Mox20I TGGCCA 2 cut(s) 327, 365
MroI TCCGGA 1 cut(s) 154
MscI TGGCCA 2 cut(s) 327, 365
MseI TTAA 5 cut(s) 410, 840, 914, 1161, 1440
MslI CAYNNNNRTG 5 cut(s) 281, 333, 695, 1097, 1511
Msp20I TGGCCA 2 cut(s) 327, 365
MspCI CTTAAG 1 cut(s) 1160
MspI CCGG 4 cut(s) 155, 387, 624, 909
MspR9I CCNGG 2 cut(s) 624, 1128
MunI CAATTG 1 cut(s) 1419
Mva1269I GAATGC 1 cut(s) 1147
MvaI CCWGG 1 cut(s) 1128
MvnI CGCG 1 cut(s) 1187
MwoI GCNNNNNNNGC 7 cut(s) 362, 441, 788, 1128, 1142, 1171, 1256
NciI CCSGG 1 cut(s) 624
NdeI CATATG 1 cut(s) 637
NdeII GATC 5 cut(s) 165, 194, 297, 574, 1115
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 2 cut(s) 1153, 1211
NruI TCGCGA 1 cut(s) 1187
OliI CACNNNNGTG 3 cut(s) 281, 333, 1097
PagI TCATGA 1 cut(s) 519
PcsI WCGNNNNNNNCGW 1 cut(s) 887
PctI GAATGC 1 cut(s) 1147
PfeI GAWTC 6 cut(s) 17, 642, 887, 970, 1319, 1550
PflMI CCANNNNNTGG 1 cut(s) 372
PinAI ACCGGT 1 cut(s) 386
PkrI GCNGC 4 cut(s) 598, 793, 1084, 1087
PleI GAGTC 3 cut(s) 1150, 1340, 1534
PpsI GAGTC 3 cut(s) 1150, 1340, 1534
Psp124BI GAGCTC 2 cut(s) 421, 784
Psp1406I AACGTT 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 1126
PspGI CCWGG 1 cut(s) 1126
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 2 cut(s) 375, 1198
PstI CTGCAG 1 cut(s) 1087
PsuI RGATCY 1 cut(s) 574
RruI TCGCGA 1 cut(s) 1187
RsaI GTAC 4 cut(s) 122, 246, 461, 865
RsaNI GTAC 4 cut(s) 121, 245, 460, 864
RseI CAYNNNNRTG 5 cut(s) 281, 333, 695, 1097, 1511
SacI GAGCTC 2 cut(s) 421, 784
SaqAI TTAA 5 cut(s) 410, 840, 914, 1161, 1440
SatI GCNGC 4 cut(s) 597, 792, 1083, 1086
Sau3AI GATC 5 cut(s) 165, 194, 297, 574, 1115
Sau96I GGNCC 2 cut(s) 375, 1198
SchI GAGTC 3 cut(s) 1150, 1341, 1534
ScrFI CCNGG 2 cut(s) 624, 1128
SduI GDGCHC 3 cut(s) 421, 552, 784
SfaNI GCATC 2 cut(s) 504, 984
SfcI CTRYAG 2 cut(s) 45, 1083
SmiMI CAYNNNNRTG 5 cut(s) 281, 333, 695, 1097, 1511
SmlI CTYRAG 4 cut(s) 422, 658, 1160, 1529
SmoI CTYRAG 4 cut(s) 422, 658, 1160, 1529
SsiI CCGC 3 cut(s) 103, 435, 1485
SspMI CTAG 2 cut(s) 1350, 1591
SstI GAGCTC 2 cut(s) 421, 784
StyD4I CCNGG 2 cut(s) 622, 1126
StyI CCWWGG 1 cut(s) 1458
TaaI ACNGT 1 cut(s) 222
TaiI ACGT 3 cut(s) 132, 231, 384
TaqI TCGA 2 cut(s) 135, 881
TatI WGTACW 2 cut(s) 120, 244
TfiI GAWTC 6 cut(s) 17, 642, 887, 970, 1319, 1550
Tru1I TTAA 5 cut(s) 410, 840, 914, 1161, 1440
Tru9I TTAA 5 cut(s) 410, 840, 914, 1161, 1440
TscAI CASTG 3 cut(s) 267, 1084, 1530
TseFI GTSAC 2 cut(s) 1153, 1211
TseI GCWGC 4 cut(s) 596, 791, 1082, 1085
Tsp45I GTSAC 2 cut(s) 1153, 1211
TspDTI ATGAA 8 cut(s) 360, 508, 656, 716, 970, 1122, 1225, 1542
TspRI CASTG 3 cut(s) 267, 1084, 1530
Van91I CCANNNNNTGG 1 cut(s) 372
Vha464I CTTAAG 1 cut(s) 1160
XapI RAATTY 4 cut(s) 582, 611, 917, 1387
XmiI GTMKAC 1 cut(s) 252
XspI CTAG 2 cut(s) 1350, 1591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.