Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000715

Physical Location & Seq

Genomic Coordinates Forward (+)

12182888 .. 12184623

Gene Structure 1736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0135200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTCTAGGAAAGGCTATGCTAATTTGGAAGAGAAACTAAAAATGGAGTTAGGGACTGAAGACGATATTGATAGAGCCATCTTATGGAAGAAAGGGCGTGTCTATAAAGATGGTAACTATTTGAGTGAGACAACCAAACAACGTGTTGAGAAAATTGATGCTTTAACGAAAGATGTGAGGGAGGGAATTGTGTCCGCTGTTAGTAGAAACGACATTTTGACTCAAGCTTTGGAGACACCTGAGCAATCGGGCAGTGTAAGAGGTGCTGGACAATTTGTTACACATAAGGTGTACTTTAATACATCTAGATATAAGCCTGCAACCAAGACACAATTGTTGGAACAGCAGTTGGAATTGATAAAAAACCAGATCAACATGTTTACTTTATTATTGGATCCCGAGAAGTTGGATCCAGTTAAACTAAACATGATGCGAGACATGTTCAGATCTAATAATGGATCTGAAAAAGCTAGTTGCTCCGTCGACAAGGAGAAAAATAAGTCTTCTAAGGAGGAGGTATCTAAGGTGGCATCGGAGAAAGAAAATGAGAAAAAAGCTACTGCCAAAAAGGTTCAAAAAATGGATGATACTCCACCTCCAATTGACAGCAGTAGAGAGAGCAAGAAGGCAAAACAATTGTATAAAGGGGGACTGATGATGAGGCAGAGAGGAGCATTGGAAGATGACAATGTGATAACTTCAACAGAGAAAGCATATATTCCTATTGAGACAACAAATGTTGTAAAAAAGGGGAAAAAATGCAAGCTAGTAGTAGACACCAAAGATAACATTGTTGCAATGGGAACTGTAATAATGTTGGATGGGCCGATACATGGAGTGCCACTAGGAGCAGAAAATATACGTATCTCAGTTGATGTGCCCATCAAGGAAGATGCTAAACTCCCCATCCCAAATGTGTCAGCTGAAATTTTTACAGTAAAGCAAGCTACCGGTACTCATGCCGCTTGGCCTCGACATCATGTTTTAATGTCACATGAAGAGGTATATAGTAAGTTGATTATAATTCCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009636 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043207 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

344

Amino Acids

38.55

Weight (kDa)

9.12

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8039	PF26133	248 - 330	4.5e-13	Domain of unknown function (DUF8039)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23550 AT3G23560 AT3G23560
fragaria_vesca	FvH4_1g15630 FvH4_1g15630 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19720 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_5g31740 FvH4_7g19991
malus_domestica	MD03G1230300.v1.1 MD11G1250700.v1.1 MD11G1251300.v1.1 MD11G1251400.v1.1 MD11G1251500.v1.1 MD12G1088700.v1.1
prunus_persica	Prupe.4G177700_v2.0.a1 Prupe.4G177700_v2.0.a1 Prupe.4G177900_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G206700_v2.0.a1
pyrus_communis	pycom03g17780 pycom10g06980 pycom11g22170 pycom11g22270
rosa_chinensis	RchiOBHm_Chr5g0033011 RchiOBHm_Chr5g0033061
rosa_laevigata	RLG00000033443 RLG00000033445
rosa_multiflora	Rmu_sc0000986.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046880 Rroxscaffold_1G00046890 Rroxscaffold_1G00046990 Rroxscaffold_1G00047000 Rroxscaffold_1G00047040
rosa_rugosa	Rorug05G0135000 Rorug05G0135100 Rorug05G0135200 Rorug05G0135500 Rorug05G0135600 Rorug05G0135700 Rorug05G0135800
rosa_samantha	Rh5AG227700 Rh5AG228200 Rh5BG229300 Rh5BG229400 Rh5CG256700 Rh5CG257200 Rh5DG233900 Rh5DG234100
rosa_wichuraiana	Rw5G020860 Rw5G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1022
AccB7I	CCANNNNNTGG	1 cut(s)	84
AccI	GTMKAC	2 cut(s)	483, 774
AciI	CCGC	2 cut(s)	195, 963
AclWI	GGATC	5 cut(s)	389, 402, 404, 417, 466
AcsI	RAATTY	1 cut(s)	927
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	2 cut(s)	293, 955
AfiI	CCNNNNNNNGG	2 cut(s)	84, 833
AflIII	ACRYGT	3 cut(s)	142, 375, 438
AgeI	ACCGGT	1 cut(s)	950
AgsI	TTSAA	2 cut(s)	575, 702
AluBI	AGCT	6 cut(s)	227, 470, 557, 766, 923, 947
AluI	AGCT	6 cut(s)	227, 470, 557, 766, 923, 947
Alw26I	GTCTC	4 cut(s)	122, 227, 429, 722
AlwI	GGATC	5 cut(s)	389, 402, 404, 417, 466
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	2 cut(s)	824, 968
ApoI	RAATTY	1 cut(s)	927
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
AsiGI	ACCGGT	1 cut(s)	950
AspS9I	GGNCC	1 cut(s)	824
AvaI	CYCGRG	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	882
BamHI	GGATCC	2 cut(s)	394, 409
BbsI	GAAGAC	2 cut(s)	66, 495
BccI	CCATC	5 cut(s)	86, 104, 815, 890, 914
BcoDI	GTCTC	4 cut(s)	122, 227, 429, 722
BfaI	CTAG	5 cut(s)	6, 306, 471, 767, 845
BglII	AGATCT	1 cut(s)	446
BisI	GCNGC	1 cut(s)	963
BlsI	GCNGC	1 cut(s)	964
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	824
BmiI	GGNNCC	2 cut(s)	396, 411
BmsI	GCATC	4 cut(s)	148, 420, 539, 883
BpiI	GAAGAC	2 cut(s)	66, 495
Bpu10I	CCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	207
BsaAI	YACGTR	1 cut(s)	863
BsaWI	WCCGGW	1 cut(s)	950
BsaXI	ACNNNNNCTCC	2 cut(s)	580, 610
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 833
Bse118I	RCCGGY	1 cut(s)	950
Bse1I	ACTGG	1 cut(s)	413
Bse3DI	GCAATG	1 cut(s)	804
BseGI	GGATG	3 cut(s)	589, 826, 906
BseLI	CCNNNNNNNGG	2 cut(s)	84, 833
BseMI	GCAATG	1 cut(s)	804
BseMII	CTCAG	2 cut(s)	231, 882
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	2 cut(s)	527, 684
BseSI	GKGCMC	1 cut(s)	882
BshFI	GGCC	2 cut(s)	826, 970
BshTI	ACCGGT	1 cut(s)	950
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	1 cut(s)	951
BslFI	GGGAC	2 cut(s)	67, 663
BslI	CCNNNNNNNGG	2 cut(s)	84, 833
BsmAI	GTCTC	4 cut(s)	122, 227, 429, 722
BsmFI	GGGAC	2 cut(s)	67, 663
BsnI	GGCC	2 cut(s)	826, 970
BsoBI	CYCGRG	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	882
Bsp143I	GATC	5 cut(s)	369, 394, 409, 446, 458
BspACI	CCGC	2 cut(s)	195, 963
BspANI	GGCC	2 cut(s)	826, 970
BspCNI	CTCAG	2 cut(s)	232, 881
BspLI	GGNNCC	2 cut(s)	396, 411
BspPI	GGATC	5 cut(s)	389, 402, 404, 417, 466
BsrDI	GCAATG	1 cut(s)	804
BsrFI	RCCGGY	1 cut(s)	950
BsrI	ACTGG	1 cut(s)	413
BssAI	RCCGGY	1 cut(s)	950
BssMI	GATC	5 cut(s)	369, 394, 409, 446, 458
Bst4CI	ACNGT	2 cut(s)	808, 937
Bst6I	CTCTTC	2 cut(s)	24, 993
BstBAI	YACGTR	1 cut(s)	863
BstC8I	GCNNGC	3 cut(s)	318, 764, 945
BstDEI	CTNAG	4 cut(s)	240, 507, 522, 868
BstF5I	GGATG	3 cut(s)	589, 826, 906
BstKTI	GATC	5 cut(s)	372, 397, 412, 449, 461
BstMAI	GTCTC	4 cut(s)	122, 227, 429, 722
BstMBI	GATC	5 cut(s)	369, 394, 409, 446, 458
BstNSI	RCATGY	2 cut(s)	379, 442
BstSLI	GKGCMC	1 cut(s)	882
BstSNI	TACGTA	1 cut(s)	863
BstV2I	GAAGAC	2 cut(s)	66, 495
BstX2I	RGATCY	4 cut(s)	394, 409, 446, 458
BstYI	RGATCY	4 cut(s)	394, 409, 446, 458
BsuRI	GGCC	2 cut(s)	826, 970
BtsCI	GGATG	3 cut(s)	589, 826, 906
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	259
Cac8I	GCNNGC	3 cut(s)	318, 764, 945
Cfr10I	RCCGGY	1 cut(s)	950
Cfr13I	GGNCC	1 cut(s)	824
Csp6I	GTAC	2 cut(s)	292, 954
CspAI	ACCGGT	1 cut(s)	950
CviAII	CATG	7 cut(s)	376, 427, 439, 833, 959, 980, 995
CviQI	GTAC	2 cut(s)	292, 954
DdeI	CTNAG	4 cut(s)	240, 507, 522, 868
DpnI	GATC	5 cut(s)	371, 396, 411, 448, 460
DpnII	GATC	5 cut(s)	369, 394, 409, 446, 458
Eam1104I	CTCTTC	2 cut(s)	24, 993
EarI	CTCTTC	2 cut(s)	24, 993
Eco105I	TACGTA	1 cut(s)	863
Eco57I	CTGAAG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	398
FaeI	CATG	7 cut(s)	379, 430, 442, 836, 962, 983, 998
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	2 cut(s)	67, 663
FatI	CATG	7 cut(s)	375, 426, 438, 832, 958, 979, 994
FblI	GTMKAC	2 cut(s)	483, 774
Fnu4HI	GCNGC	1 cut(s)	963
FokI	GGATG	3 cut(s)	596, 833, 893
Fsp4HI	GCNGC	1 cut(s)	963
FspBI	CTAG	5 cut(s)	6, 306, 471, 767, 845
GluI	GCNGC	1 cut(s)	963
HaeIII	GGCC	2 cut(s)	826, 970
HapII	CCGG	1 cut(s)	951
Hin1II	CATG	7 cut(s)	379, 430, 442, 836, 962, 983, 998
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	1 cut(s)	951
Hpy166II	GTNNAC	4 cut(s)	292, 381, 484, 775
Hpy188I	TCNGA	3 cut(s)	446, 463, 535
Hpy188III	TCNNGA	2 cut(s)	306, 398
Hpy8I	GTNNAC	4 cut(s)	292, 381, 484, 775
Hpy99I	CGWCG	1 cut(s)	485
HpyAV	CCTTC	1 cut(s)	619
HpyCH4III	ACNGT	2 cut(s)	808, 937
HpyCH4IV	ACGT	2 cut(s)	142, 862
HpyCH4V	TGCA	3 cut(s)	320, 762, 797
HpyF3I	CTNAG	4 cut(s)	240, 507, 522, 868
HpySE526I	ACGT	2 cut(s)	142, 862
Hsp92II	CATG	7 cut(s)	379, 430, 442, 836, 962, 983, 998
Kzo9I	GATC	5 cut(s)	369, 394, 409, 446, 458
LmnI	GCTCC	3 cut(s)	482, 671, 848
LpnPI	CCDG	6 cut(s)	252, 252, 330, 380, 426, 964
LweI	GCATC	4 cut(s)	148, 420, 539, 883
MaeI	CTAG	5 cut(s)	6, 306, 471, 767, 845
MaeII	ACGT	2 cut(s)	142, 862
MaeIII	GTNAC	3 cut(s)	113, 277, 990
MalI	GATC	5 cut(s)	371, 396, 411, 448, 460
MboI	GATC	5 cut(s)	369, 394, 409, 446, 458
MboII	GAAGA	7 cut(s)	41, 71, 100, 495, 692, 902, 1010
MfeI	CAATTG	3 cut(s)	332, 600, 635
MflI	RGATCY	4 cut(s)	394, 409, 446, 458
MhlI	GDGCHC	1 cut(s)	882
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	4 cut(s)	318, 330, 387, 798
MseI	TTAA	4 cut(s)	164, 297, 417, 986
MspA1I	CMGCKG	2 cut(s)	197, 923
MspI	CCGG	1 cut(s)	951
MunI	CAATTG	3 cut(s)	332, 600, 635
NdeII	GATC	5 cut(s)	369, 394, 409, 446, 458
NlaIII	CATG	7 cut(s)	379, 430, 442, 836, 962, 983, 998
NlaIV	GGNNCC	2 cut(s)	396, 411
NmuCI	GTSAC	1 cut(s)	990
NspI	RCATGY	2 cut(s)	379, 442
PciI	ACATGT	2 cut(s)	375, 438
PflMI	CCANNNNNTGG	1 cut(s)	84
PinAI	ACCGGT	1 cut(s)	950
PkrI	GCNGC	1 cut(s)	964
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Ppu21I	YACGTR	1 cut(s)	863
PscI	ACATGT	2 cut(s)	375, 438
PsiI	TTATAA	1 cut(s)	1022
PspN4I	GGNNCC	2 cut(s)	396, 411
PspPI	GGNCC	1 cut(s)	824
PsuI	RGATCY	4 cut(s)	394, 409, 446, 458
PvuII	CAGCTG	1 cut(s)	923
RsaI	GTAC	2 cut(s)	293, 955
RsaNI	GTAC	2 cut(s)	292, 954
SalI	GTCGAC	1 cut(s)	482
SaqAI	TTAA	4 cut(s)	164, 297, 417, 986
SatI	GCNGC	1 cut(s)	963
Sau3AI	GATC	5 cut(s)	369, 394, 409, 446, 458
Sau96I	GGNCC	1 cut(s)	824
SchI	GAGTC	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	882
SfaNI	GCATC	4 cut(s)	148, 420, 539, 883
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
SnaBI	TACGTA	1 cut(s)	863
SsiI	CCGC	2 cut(s)	195, 963
SspMI	CTAG	5 cut(s)	6, 306, 471, 767, 845
TaaI	ACNGT	2 cut(s)	808, 937
TaiI	ACGT	2 cut(s)	145, 865
TaqI	TCGA	2 cut(s)	483, 973
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	1 cut(s)	965
Tru1I	TTAA	4 cut(s)	164, 297, 417, 986
Tru9I	TTAA	4 cut(s)	164, 297, 417, 986
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	990
Tsp45I	GTSAC	1 cut(s)	990
TspDTI	ATGAA	1 cut(s)	1011
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	1 cut(s)	259
Van91I	CCANNNNNTGG	1 cut(s)	84
XapI	RAATTY	1 cut(s)	927
XbaI	TCTAGA	1 cut(s)	305
XceI	RCATGY	2 cut(s)	379, 442
XmiI	GTMKAC	2 cut(s)	483, 774
XspI	CTAG	5 cut(s)	6, 306, 471, 767, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.