Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000715

Physical Location & Seq

Genomic Coordinates Reverse (-)

13203108 .. 13207250

Gene Structure 4143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g20060.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGATTGTGGAAGGAGAAGAAGGATCAAAAGGAAGGTGGTGGAAGAAAATCTTAGATATTGAAGAGACCAAAAAACAGGTCCTGTTTTTACTGCCAGCAATTCTAACTAATGTGCTCTATTCCTTCATCATAATTGTTTCCGTCATGTTTGCTGGCCACCTCGGTGAGCTTCAGTTGGCTGGTGCAACCTTGGCCAAGTCATGGGCCAATATTACTGGTTTCGCATTCATGGTTGGGTTAAGTGGAGCTCTTGAGACGCATTGTGGGCAAGGGTTTGGTGCAAAGTCATATAGATTGTTGGGGATTTATCTCCAAGCTTCCTGTATCATATCTTTGCAAAATATCTTGAGATTTCTTCAGACGCAATCCGCATCTGTAATGCCAATAATCTTCTCTGTAATATCCATCGTTAGTCACATTGGTATTACATATGGTTTGGTACATTGGACAGCTCTTGGTTTTAGGGGAGCTCCACTAGCAGCTTCAATTTCACTGTGGATATCGGTTCTTATGTTGGCCTTGAACATTCGATGTTCAAAGAATTTTGAGCATACATGGGAAGGATTTTCGTTGGAATCATTCAGTTACATCCACACTGGTTTGAAACTTGCCCTCCCCTCTGCAGCAATGGAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009636 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043207 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

213

Amino Acids

23.28

Weight (kDa)

8.45

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	32 - 191	9.3e-33	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23550 AT3G23560 AT3G23560
fragaria_vesca	FvH4_1g15630 FvH4_1g15630 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19720 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_5g31740 FvH4_7g19991
malus_domestica	MD03G1230300.v1.1 MD11G1250700.v1.1 MD11G1251300.v1.1 MD11G1251400.v1.1 MD11G1251500.v1.1 MD12G1088700.v1.1
prunus_persica	Prupe.4G177700_v2.0.a1 Prupe.4G177700_v2.0.a1 Prupe.4G177900_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G206700_v2.0.a1
pyrus_communis	pycom03g17780 pycom10g06980 pycom11g22170 pycom11g22270
rosa_chinensis	RchiOBHm_Chr5g0033011 RchiOBHm_Chr5g0033061
rosa_laevigata	RLG00000033443 RLG00000033445
rosa_multiflora	Rmu_sc0000986.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046880 Rroxscaffold_1G00046890 Rroxscaffold_1G00046990 Rroxscaffold_1G00047000 Rroxscaffold_1G00047040
rosa_rugosa	Rorug05G0135000 Rorug05G0135100 Rorug05G0135200 Rorug05G0135500 Rorug05G0135600 Rorug05G0135700 Rorug05G0135800
rosa_samantha	Rh5AG227700 Rh5AG228200 Rh5BG229300 Rh5BG229400 Rh5CG256700 Rh5CG257200 Rh5DG233900 Rh5DG234100
rosa_wichuraiana	Rw5G020860 Rw5G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	201
AciI	CCGC	1 cut(s)	369
AclWI	GGATC	1 cut(s)	31
AcoI	YGGCCR	2 cut(s)	154, 192
AcsI	RAATTY	1 cut(s)	541
AcuI	CTGAAG	2 cut(s)	155, 341
AfaI	GTAC	1 cut(s)	441
AfiI	CCNNNNNNNGG	1 cut(s)	201
AgsI	TTSAA	5 cut(s)	62, 486, 523, 537, 604
AleI	CACNNNNGTG	1 cut(s)	162
AluBI	AGCT	6 cut(s)	169, 248, 317, 452, 470, 482
AluI	AGCT	6 cut(s)	169, 248, 317, 452, 470, 482
Alw21I	GWGCWC	3 cut(s)	117, 250, 472
Alw26I	GTCTC	2 cut(s)	59, 248
AlwI	GGATC	1 cut(s)	31
AlwNI	CAGNNNCTG	1 cut(s)	82
AoxI	GGCC	4 cut(s)	154, 192, 204, 516
ApeKI	GCWGC	2 cut(s)	479, 623
ApoI	RAATTY	1 cut(s)	541
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
AspS9I	GGNCC	2 cut(s)	79, 204
AsuHPI	GGTGA	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	79
BalI	TGGCCA	2 cut(s)	156, 194
BanII	GRGCYC	2 cut(s)	250, 472
Bbv12I	GWGCWC	3 cut(s)	117, 250, 472
BbvI	GCAGC	2 cut(s)	491, 635
BccI	CCATC	1 cut(s)	413
BcoDI	GTCTC	2 cut(s)	59, 248
BfaI	CTAG	1 cut(s)	476
BfmI	CTRYAG	1 cut(s)	621
BisI	GCNGC	2 cut(s)	480, 624
BlsI	GCNGC	2 cut(s)	481, 625
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	2 cut(s)	79, 204
BmsI	GCATC	1 cut(s)	380
BpuEI	CTTGAG	2 cut(s)	272, 367
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	160, 189
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse1I	ACTGG	2 cut(s)	220, 601
Bse3DI	GCAATG	1 cut(s)	633
BseDI	CCNNGG	2 cut(s)	160, 189
BseGI	GGATG	1 cut(s)	588
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMI	GCAATG	1 cut(s)	633
BseNI	ACTGG	2 cut(s)	220, 601
BseXI	GCAGC	2 cut(s)	491, 635
BshFI	GGCC	4 cut(s)	156, 194, 206, 518
BsiHKAI	GWGCWC	3 cut(s)	117, 250, 472
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	2 cut(s)	59, 248
BsmBI	CGTCTC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	224
BsnI	GGCC	4 cut(s)	156, 194, 206, 518
Bso31I	GGTCTC	1 cut(s)	59
Bsp1286I	GDGCHC	3 cut(s)	117, 250, 472
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	1 cut(s)	369
BspANI	GGCC	4 cut(s)	156, 194, 206, 518
BspMAI	CTGCAG	1 cut(s)	625
BspPI	GGATC	1 cut(s)	31
BspTNI	GGTCTC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	633
BsrI	ACTGG	2 cut(s)	220, 601
BssECI	CCNNGG	2 cut(s)	160, 189
BssMI	GATC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	495
Bst6I	CTCTTC	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	96, 154
BstDEI	CTNAG	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	588
BstKTI	GATC	1 cut(s)	26
BstMAI	GTCTC	2 cut(s)	59, 248
BstMBI	GATC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 265, 476
BstSFI	CTRYAG	1 cut(s)	621
BstV1I	GCAGC	2 cut(s)	491, 635
BsuRI	GGCC	4 cut(s)	156, 194, 206, 518
BtsCI	GGATG	1 cut(s)	588
BtsIMutI	CAGTG	2 cut(s)	491, 594
Cac8I	GCNNGC	2 cut(s)	96, 154
CaiI	CAGNNNCTG	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	79, 204
CseI	GACGC	2 cut(s)	265, 370
Csp6I	GTAC	1 cut(s)	440
CviAII	CATG	4 cut(s)	145, 201, 229, 555
CviQI	GTAC	1 cut(s)	440
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
EaeI	YGGCCR	2 cut(s)	154, 192
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Ecl136II	GAGCTC	2 cut(s)	248, 470
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	2 cut(s)	250, 472
Eco31I	GGTCTC	1 cut(s)	59
Eco32I	GATATC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	79
Eco53kI	GAGCTC	2 cut(s)	248, 470
Eco57I	CTGAAG	2 cut(s)	155, 341
EcoICRI	GAGCTC	2 cut(s)	248, 470
EcoO109I	RGGNCCY	1 cut(s)	79
EcoRV	GATATC	1 cut(s)	501
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	2 cut(s)	250, 472
ErhI	CCWWGG	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	4 cut(s)	148, 204, 232, 558
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	4 cut(s)	144, 200, 228, 554
FauNDI	CATATG	1 cut(s)	430
Fnu4HI	GCNGC	2 cut(s)	480, 624
FokI	GGATG	1 cut(s)	575
FriOI	GRGCYC	2 cut(s)	250, 472
Fsp4HI	GCNGC	2 cut(s)	480, 624
FspBI	CTAG	1 cut(s)	476
GluI	GCNGC	2 cut(s)	480, 624
HaeIII	GGCC	4 cut(s)	156, 194, 206, 518
HgaI	GACGC	2 cut(s)	265, 370
Hin1II	CATG	4 cut(s)	148, 204, 232, 558
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	1 cut(s)	575
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	1 cut(s)	360
Hpy188III	TCNNGA	2 cut(s)	251, 346
HpyAV	CCTTC	5 cut(s)	5, 14, 27, 133, 554
HpyCH4III	ACNGT	1 cut(s)	495
HpyCH4V	TGCA	4 cut(s)	185, 281, 337, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 265, 476
HpyF3I	CTNAG	1 cut(s)	52
Hsp92II	CATG	4 cut(s)	148, 204, 232, 558
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	3 cut(s)	245, 467, 475
LpnPI	CCDG	8 cut(s)	62, 95, 108, 138, 165, 201, 334, 582
Lsp1109I	GCAGC	2 cut(s)	491, 635
LweI	GCATC	1 cut(s)	380
MaeI	CTAG	1 cut(s)	476
MaeIII	GTNAC	2 cut(s)	413, 584
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MboII	GAAGA	5 cut(s)	29, 55, 74, 347, 382
MhlI	GDGCHC	3 cut(s)	117, 250, 472
MlsI	TGGCCA	2 cut(s)	156, 194
MluCI	AATT	4 cut(s)	99, 132, 486, 541
MluNI	TGGCCA	2 cut(s)	156, 194
MmeI	TCCRAC	1 cut(s)	552
MnlI	CCTC	3 cut(s)	170, 623, 628
Mox20I	TGGCCA	2 cut(s)	156, 194
MscI	TGGCCA	2 cut(s)	156, 194
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	1 cut(s)	162
Msp20I	TGGCCA	2 cut(s)	156, 194
Mva1269I	GAATGC	1 cut(s)	224
MwoI	GCNNNNNNNGC	3 cut(s)	191, 265, 476
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	1 cut(s)	23
NlaIII	CATG	4 cut(s)	148, 204, 232, 558
NmuCI	GTSAC	1 cut(s)	413
OliI	CACNNNNGTG	1 cut(s)	162
PctI	GAATGC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	575
PflMI	CCANNNNNTGG	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	481, 625
PpuMI	RGGWCCY	1 cut(s)	79
Psp124BI	GAGCTC	2 cut(s)	250, 472
Psp5II	RGGWCCY	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	79, 204
PspPPI	RGGWCCY	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	625
PstNI	CAGNNNCTG	1 cut(s)	82
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
RseI	CAYNNNNRTG	1 cut(s)	162
SacI	GAGCTC	2 cut(s)	250, 472
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	2 cut(s)	480, 624
Sau3AI	GATC	1 cut(s)	23
Sau96I	GGNCC	2 cut(s)	79, 204
SduI	GDGCHC	3 cut(s)	117, 250, 472
SfaNI	GCATC	1 cut(s)	380
SfcI	CTRYAG	1 cut(s)	621
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	2 cut(s)	251, 346
SmoI	CTYRAG	2 cut(s)	251, 346
Sse9I	AATT	4 cut(s)	99, 132, 486, 541
SsiI	CCGC	1 cut(s)	369
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	1 cut(s)	476
SstI	GAGCTC	2 cut(s)	250, 472
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	495
TaqI	TCGA	1 cut(s)	529
TasI	AATT	4 cut(s)	99, 132, 486, 541
TfiI	GAWTC	1 cut(s)	575
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	2 cut(s)	498, 601
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	2 cut(s)	479, 623
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	2 cut(s)	115, 217
TspGWI	ACGGA	1 cut(s)	130
TspRI	CASTG	2 cut(s)	498, 601
Van91I	CCANNNNNTGG	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	541
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.