Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000715

Physical Location & Seq

Genomic Coordinates Reverse (-)

12156256 .. 12157165

Gene Structure 910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0135000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAGAAATGCCCTATGCTTATCCTTAATTTTGATTTATCATTTTGCTCAAGTAGGATTTATAGTTGAATATAAAATTTTCCAACAAGTAGCATCCCAAACTTCTGTAGTTGAGATGGCATCTGAAACTAAAGGCTTGAAAGGTCTTAAGTGGGAGGTATTTGTGGAGAAAGCTGGGATCTGGGGTGAAGCTGACTTTGTCAAAACTGGATTTGTAGATCACATCAATACCACAAAAGTTACCACTACCTGTGGTATACAACAAGCATTTTTGTTGATGAAAATGAAGAGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009636 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043207 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

98

Amino Acids

10.98

Weight (kDa)

8.62

Isoelectric Point (pI)

15.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23550 AT3G23560 AT3G23560
fragaria_vesca	FvH4_1g15630 FvH4_1g15630 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19720 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_5g31740 FvH4_7g19991
malus_domestica	MD03G1230300.v1.1 MD11G1250700.v1.1 MD11G1251300.v1.1 MD11G1251400.v1.1 MD11G1251500.v1.1 MD12G1088700.v1.1
prunus_persica	Prupe.4G177700_v2.0.a1 Prupe.4G177700_v2.0.a1 Prupe.4G177900_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G206700_v2.0.a1
pyrus_communis	pycom03g17780 pycom10g06980 pycom11g22170 pycom11g22270
rosa_chinensis	RchiOBHm_Chr5g0033011 RchiOBHm_Chr5g0033061
rosa_laevigata	RLG00000033443 RLG00000033445
rosa_multiflora	Rmu_sc0000986.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046880 Rroxscaffold_1G00046890 Rroxscaffold_1G00046990 Rroxscaffold_1G00047000 Rroxscaffold_1G00047040
rosa_rugosa	Rorug05G0135000 Rorug05G0135100 Rorug05G0135200 Rorug05G0135500 Rorug05G0135600 Rorug05G0135700 Rorug05G0135800
rosa_samantha	Rh5AG227700 Rh5AG228200 Rh5BG229300 Rh5BG229400 Rh5CG256700 Rh5CG257200 Rh5DG233900 Rh5DG234100
rosa_wichuraiana	Rw5G020860 Rw5G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	256
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	75
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	68, 139
AluBI	AGCT	2 cut(s)	173, 191
AluI	AGCT	2 cut(s)	173, 191
AlwI	GGATC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	197
BccI	CCATC	1 cut(s)	109
BfmI	CTRYAG	1 cut(s)	105
BfrI	CTTAAG	1 cut(s)	146
BmsI	GCATC	2 cut(s)	101, 128
BpuEI	CTTGAG	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	211
BseGI	GGATG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	211
BseYI	CCCAGC	1 cut(s)	173
Bsp143I	GATC	2 cut(s)	177, 217
BspPI	GGATC	1 cut(s)	185
BspTI	CTTAAG	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	211
BssMI	GATC	2 cut(s)	177, 217
BssNAI	GTATAC	1 cut(s)	257
Bst1107I	GTATAC	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	281
BstAFI	CTTAAG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	92
BstKTI	GATC	2 cut(s)	180, 220
BstMBI	GATC	2 cut(s)	177, 217
BstSFI	CTRYAG	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BstZ17I	GTATAC	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	92
CviJI	RGCY	3 cut(s)	135, 173, 191
CviKI_1	RGCY	3 cut(s)	135, 173, 191
DpnI	GATC	2 cut(s)	179, 219
DpnII	GATC	2 cut(s)	177, 217
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
FaiI	YATR	4 cut(s)	16, 62, 72, 257
FblI	GTMKAC	1 cut(s)	256
FokI	GGATG	1 cut(s)	79
GsaI	CCCAGC	1 cut(s)	177
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	257
Kzo9I	GATC	2 cut(s)	177, 217
LpnPI	CCDG	4 cut(s)	159, 166, 192, 262
LweI	GCATC	2 cut(s)	101, 128
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	2 cut(s)	179, 219
MboI	GATC	2 cut(s)	177, 217
MflI	RGATCY	1 cut(s)	177
MluCI	AATT	2 cut(s)	27, 75
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	1 cut(s)	148
MseI	TTAA	3 cut(s)	26, 147, 295
MspCI	CTTAAG	1 cut(s)	146
NdeII	GATC	2 cut(s)	177, 217
PflFI	GACNNNGTC	1 cut(s)	197
PspFI	CCCAGC	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	177
PsyI	GACNNNGTC	1 cut(s)	197
SaqAI	TTAA	3 cut(s)	26, 147, 295
Sau3AI	GATC	2 cut(s)	177, 217
SetI	ASST	5 cut(s)	145, 159, 175, 193, 251
SfaNI	GCATC	2 cut(s)	101, 128
SfcI	CTRYAG	1 cut(s)	105
SgeI	CNNG	8 cut(s)	62, 98, 148, 186, 193, 219, 261, 275
SmlI	CTYRAG	2 cut(s)	48, 146
SmoI	CTYRAG	2 cut(s)	48, 146
Sse9I	AATT	2 cut(s)	27, 75
TasI	AATT	2 cut(s)	27, 75
Tru1I	TTAA	3 cut(s)	26, 147, 295
Tru9I	TTAA	3 cut(s)	26, 147, 295
TspDTI	ATGAA	1 cut(s)	293
Tth111I	GACNNNGTC	1 cut(s)	197
Vha464I	CTTAAG	1 cut(s)	146
XapI	RAATTY	1 cut(s)	75
XmiI	GTMKAC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.