Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000715

Physical Location & Seq

Genomic Coordinates Reverse (-)

36355034 .. 36355933

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1251500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGAGAACAGAGACATGGTAGCAAACACCAACAATACGACCCCGTTGTTGGACGCAGGTAATCACGAAGGAAGAAAAGAGGGGTGGTGGAATAAGGTGCTGGACTTAGAGGAGGCAAAAAACCAGGTGTTGTTTTCGTTGCCGATGATTCTGACCAACGTTTGCTTTTACATGATCCCTCTGATTTCTGTCATGTTTGCCGGCCATCTCGGTGAGCTTCAGCTTGCCGGTGCAACCCTTGCAAATTCTTGGGCCACCGTCACCGGCTTCGCTTTCATGGTTGGATTAAGTGGAGCTCTAGAAACGTTGTGTGGGCAAGGATTCGGCGCAAAGTTATATAGAATGCTGGGGATTTATCTACAAGCCTCTTCCATCATTTCATTCCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009636 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043207 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

130

Amino Acids

14.08

Weight (kDa)

5.19

Isoelectric Point (pI)

17.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	48 - 127	3.6e-16	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23550 AT3G23560 AT3G23560
fragaria_vesca	FvH4_1g15630 FvH4_1g15630 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19720 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_5g31740 FvH4_7g19991
malus_domestica	MD03G1230300.v1.1 MD11G1250700.v1.1 MD11G1251300.v1.1 MD11G1251400.v1.1 MD11G1251500.v1.1 MD12G1088700.v1.1
prunus_persica	Prupe.4G177700_v2.0.a1 Prupe.4G177700_v2.0.a1 Prupe.4G177900_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G206700_v2.0.a1
pyrus_communis	pycom03g17780 pycom10g06980 pycom11g22170 pycom11g22270
rosa_chinensis	RchiOBHm_Chr5g0033011 RchiOBHm_Chr5g0033061
rosa_laevigata	RLG00000033443 RLG00000033445
rosa_multiflora	Rmu_sc0000986.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046880 Rroxscaffold_1G00046890 Rroxscaffold_1G00046990 Rroxscaffold_1G00047000 Rroxscaffold_1G00047040
rosa_rugosa	Rorug05G0135000 Rorug05G0135100 Rorug05G0135200 Rorug05G0135500 Rorug05G0135600 Rorug05G0135700 Rorug05G0135800
rosa_samantha	Rh5AG227700 Rh5AG228200 Rh5BG229300 Rh5BG229400 Rh5CG256700 Rh5CG257200 Rh5DG233900 Rh5DG234100
rosa_wichuraiana	Rw5G020860 Rw5G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	47
AclI	AACGTT	2 cut(s)	159, 305
AclWI	GGATC	1 cut(s)	169
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	244
AcuI	CTGAAG	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	3 cut(s)	217, 223, 296
AluI	AGCT	3 cut(s)	217, 223, 296
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	6
AlwI	GGATC	1 cut(s)	169
AoxI	GGCC	2 cut(s)	202, 252
ApoI	RAATTY	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	224, 253
BanII	GRGCYC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	298
BccI	CCATC	2 cut(s)	213, 380
BciT130I	CCWGG	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	6
BfaI	CTAG	1 cut(s)	299
BfuAI	ACCTGC	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse118I	RCCGGY	3 cut(s)	200, 227, 263
BseBI	CCWGG	1 cut(s)	125
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseRI	GAGGAG	1 cut(s)	125
BseYI	CCCAGC	1 cut(s)	346
BshFI	GGCC	2 cut(s)	204, 254
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	3 cut(s)	201, 228, 264
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	6
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	2 cut(s)	204, 254
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	1 cut(s)	174
BspANI	GGCC	2 cut(s)	204, 254
BspMI	ACCTGC	1 cut(s)	47
BspPI	GGATC	1 cut(s)	169
BsrFI	RCCGGY	3 cut(s)	200, 227, 263
BssAI	RCCGGY	3 cut(s)	200, 227, 263
BssMI	GATC	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	1 cut(s)	373
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	202, 225
BstDEI	CTNAG	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	1 cut(s)	177
BstMAI	GTCTC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	204, 254
BveI	ACCTGC	1 cut(s)	47
Cac8I	GCNNGC	2 cut(s)	202, 225
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	3 cut(s)	200, 227, 263
Cfr13I	GGNCC	1 cut(s)	252
CseI	GACGC	1 cut(s)	62
CsiI	ACCWGGT	1 cut(s)	123
CviAII	CATG	4 cut(s)	16, 172, 193, 277
CviJI	RGCY	7 cut(s)	204, 217, 223, 254, 267, 296, 365
CviKI_1	RGCY	7 cut(s)	204, 217, 223, 254, 267, 296, 365
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	373
Ecl136II	GAGCTC	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	298
FaeI	CATG	4 cut(s)	19, 175, 196, 280
FaiI	YATR	6 cut(s)	17, 173, 194, 278, 337, 339
FatI	CATG	4 cut(s)	15, 171, 192, 276
FriOI	GRGCYC	1 cut(s)	298
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	1 cut(s)	328
GsaI	CCCAGC	1 cut(s)	350
HaeIII	GGCC	2 cut(s)	204, 254
HapII	CCGG	3 cut(s)	201, 228, 264
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	4 cut(s)	19, 175, 196, 280
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HinfI	GANTC	2 cut(s)	148, 321
HpaII	CCGG	3 cut(s)	201, 228, 264
HphI	GGTGA	2 cut(s)	224, 253
Hpy188I	TCNGA	2 cut(s)	153, 183
Hpy188III	TCNNGA	2 cut(s)	65, 299
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	2 cut(s)	159, 305
HpyCH4V	TGCA	2 cut(s)	233, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	1 cut(s)	106
HpySE526I	ACGT	2 cut(s)	159, 305
Hsp92II	CATG	4 cut(s)	19, 175, 196, 280
HspAI	GCGC	1 cut(s)	327
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	293
LpnPI	CCDG	8 cut(s)	42, 86, 110, 137, 214, 241, 277, 332
MabI	ACCWGGT	1 cut(s)	123
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	2 cut(s)	159, 305
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	2 cut(s)	84, 360
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	1 cut(s)	244
MmeI	TCCRAC	2 cut(s)	30, 262
MnlI	CCTC	5 cut(s)	73, 103, 106, 189, 376
MroNI	GCCGGC	1 cut(s)	200
MseI	TTAA	1 cut(s)	287
MslI	CAYNNNNRTG	1 cut(s)	210
MspI	CCGG	3 cut(s)	201, 228, 264
MspR9I	CCNGG	1 cut(s)	125
Mva1269I	GAATGC	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	239
NaeI	GCCGGC	1 cut(s)	202
NdeII	GATC	1 cut(s)	174
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	4 cut(s)	19, 175, 196, 280
NmuCI	GTSAC	1 cut(s)	259
PctI	GAATGC	1 cut(s)	348
PdiI	GCCGGC	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	148, 321
Psp124BI	GAGCTC	1 cut(s)	298
Psp1406I	AACGTT	2 cut(s)	159, 305
Psp6I	CCWGG	1 cut(s)	123
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	252
RseI	CAYNNNNRTG	1 cut(s)	210
SacI	GAGCTC	1 cut(s)	298
SaqAI	TTAA	1 cut(s)	287
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	1 cut(s)	252
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	8 cut(s)	61, 99, 129, 162, 219, 225, 298, 308
SexAI	ACCWGGT	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	1 cut(s)	244
SspMI	CTAG	1 cut(s)	299
SstI	GAGCTC	1 cut(s)	298
StyD4I	CCNGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	2 cut(s)	162, 308
TasI	AATT	1 cut(s)	244
TfiI	GAWTC	2 cut(s)	148, 321
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TseFI	GTSAC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	265, 369
XapI	RAATTY	1 cut(s)	244
XbaI	TCTAGA	1 cut(s)	298
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.