MATE efflux family protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 8 - 93 | 1e-20 | Rx N-terminal domain |
| NB-ARC | PF00931 | 172 - 347 | 5e-45 | NB-ARC domain |
| WHD_DRP | PF23559 | 434 - 505 | 1.3e-21 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 549 - 872 | 3.8e-42 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 576 - 631 | 3.9e-06 | Leucine rich repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2645 |
| Acc36I | ACCTGC | 1 cut(s) | 1941 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1090 |
| AccI | GTMKAC | 1 cut(s) | 696 |
| AciI | CCGC | 5 cut(s) | 775, 1858, 2249, 2669, 2731 |
| AclWI | GGATC | 3 cut(s) | 1170, 1391, 2679 |
| AcoI | YGGCCR | 1 cut(s) | 1631 |
| AcsI | RAATTY | 6 cut(s) | 233, 722, 757, 1807, 2473, 2482 |
| AcuI | CTGAAG | 3 cut(s) | 186, 453, 1377 |
| AfaI | GTAC | 4 cut(s) | 251, 398, 2364, 2685 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1090, 1114 |
| AflIII | ACRYGT | 5 cut(s) | 246, 843, 1372, 1677, 2396 |
| AhlI | ACTAGT | 1 cut(s) | 796 |
| AjiI | CACGTC | 1 cut(s) | 844 |
| AjnI | CCWGG | 2 cut(s) | 825, 1633 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1961, 1993 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1413, 1445 |
| Alw21I | GWGCWC | 1 cut(s) | 1014 |
| Alw26I | GTCTC | 2 cut(s) | 637, 2459 |
| AlwI | GGATC | 3 cut(s) | 1170, 1391, 2679 |
| AoxI | GGCC | 8 cut(s) | 3, 147, 204, 406, 1105, 1472, 1631, 2584 |
| ApeKI | GCWGC | 2 cut(s) | 1045, 1171 |
| ApoI | RAATTY | 6 cut(s) | 233, 722, 757, 1807, 2473, 2482 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2458, 2490 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 128, 438, 1028, 1107, 2217 |
| AspLEI | GCGC | 3 cut(s) | 1938, 2005, 2619 |
| AspS9I | GGNCC | 1 cut(s) | 2584 |
| AsuHPI | GGTGA | 5 cut(s) | 649, 965, 1378, 2236, 2533 |
| AsuII | TTCGAA | 4 cut(s) | 115, 706, 2257, 2715 |
| BaeGI | GKGCMC | 1 cut(s) | 1820 |
| BalI | TGGCCA | 1 cut(s) | 1633 |
| BanII | GRGCYC | 1 cut(s) | 1014 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2346, 2378 |
| BbsI | GAAGAC | 7 cut(s) | 462, 495, 1137, 1581, 2361, 2393, 2576 |
| Bbv12I | GWGCWC | 1 cut(s) | 1014 |
| BbvI | GCAGC | 2 cut(s) | 1057, 1183 |
| BccI | CCATC | 5 cut(s) | 528, 1273, 1400, 1947, 2014 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 641, 675, 1807, 1841 |
| BciT130I | CCWGG | 2 cut(s) | 827, 1635 |
| BclI | TGATCA | 1 cut(s) | 714 |
| BcoDI | GTCTC | 2 cut(s) | 637, 2459 |
| BcuI | ACTAGT | 1 cut(s) | 796 |
| BfmI | CTRYAG | 2 cut(s) | 2443, 2508 |
| BfoI | RGCGCY | 1 cut(s) | 2006 |
| BfuAI | ACCTGC | 1 cut(s) | 1941 |
| BglII | AGATCT | 1 cut(s) | 2700 |
| BisI | GCNGC | 3 cut(s) | 775, 1046, 1172 |
| BlsI | GCNGC | 3 cut(s) | 776, 1047, 1173 |
| Bme1390I | CCNGG | 2 cut(s) | 827, 1635 |
| BmgBI | CACGTC | 1 cut(s) | 844 |
| BmgT120I | GGNCC | 1 cut(s) | 2584 |
| BmiI | GGNNCC | 1 cut(s) | 1966 |
| BmrFI | CCNGG | 2 cut(s) | 827, 1635 |
| BmrI | ACTGGG | 1 cut(s) | 2591 |
| BmsI | GCATC | 9 cut(s) | 130, 201, 950, 1207, 1479, 1491, 1762, 1861, 2514 |
| BmuI | ACTGGG | 1 cut(s) | 2591 |
| BpiI | GAAGAC | 7 cut(s) | 462, 495, 1137, 1581, 2361, 2393, 2576 |
| BpmI | CTGGAG | 2 cut(s) | 2483, 2519 |
| Bpu14I | TTCGAA | 4 cut(s) | 115, 706, 2257, 2715 |
| BpuEI | CTTGAG | 2 cut(s) | 71, 1816 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1410 |
| BsaJI | CCNNGG | 1 cut(s) | 2297 |
| BsaWI | WCCGGW | 1 cut(s) | 2221 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1090, 1114 |
| Bse1I | ACTGG | 6 cut(s) | 75, 501, 1710, 1966, 2536, 2586 |
| Bse3DI | GCAATG | 3 cut(s) | 1214, 1279, 2573 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1410 |
| BseBI | CCWGG | 2 cut(s) | 827, 1635 |
| BseDI | CCNNGG | 1 cut(s) | 2297 |
| BseGI | GGATG | 8 cut(s) | 145, 539, 550, 941, 1753, 1777, 2691, 2723 |
| BseJI | GATNNNNATC | 1 cut(s) | 1410 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1090, 1114 |
| BseMI | GCAATG | 3 cut(s) | 1214, 1279, 2573 |
| BseMII | CTCAG | 4 cut(s) | 456, 1238, 2113, 2505 |
| BseNI | ACTGG | 6 cut(s) | 75, 501, 1710, 1966, 2536, 2586 |
| BseRI | GAGGAG | 1 cut(s) | 122 |
| BseSI | GKGCMC | 1 cut(s) | 1820 |
| BseXI | GCAGC | 2 cut(s) | 1057, 1183 |
| BsgI | GTGCAG | 1 cut(s) | 473 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2678 |
| BshFI | GGCC | 8 cut(s) | 5, 149, 206, 408, 1107, 1474, 1633, 2586 |
| BsiEI | CGRYCG | 1 cut(s) | 2678 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1014 |
| BsiSI | CCGG | 2 cut(s) | 1769, 2222 |
| BslFI | GGGAC | 3 cut(s) | 2008, 2078, 2615 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1090, 1114 |
| BsmAI | GTCTC | 2 cut(s) | 637, 2459 |
| BsmBI | CGTCTC | 1 cut(s) | 2459 |
| BsmFI | GGGAC | 3 cut(s) | 2008, 2078, 2615 |
| BsmI | GAATGC | 2 cut(s) | 769, 1028 |
| BsnI | GGCC | 8 cut(s) | 5, 149, 206, 408, 1107, 1474, 1633, 2586 |
| Bsp119I | TTCGAA | 4 cut(s) | 115, 706, 2257, 2715 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1014, 1820 |
| Bsp143I | GATC | 7 cut(s) | 366, 714, 1162, 1383, 1495, 2671, 2700 |
| BspACI | CCGC | 5 cut(s) | 775, 1858, 2249, 2669, 2731 |
| BspANI | GGCC | 8 cut(s) | 5, 149, 206, 408, 1107, 1474, 1633, 2586 |
| BspCNI | CTCAG | 4 cut(s) | 457, 1239, 2112, 2504 |
| BspLI | GGNNCC | 1 cut(s) | 1966 |
| BspMAI | CTGCAG | 1 cut(s) | 2447 |
| BspMI | ACCTGC | 1 cut(s) | 1941 |
| BspPI | GGATC | 3 cut(s) | 1170, 1391, 2679 |
| BspQI | GCTCTTC | 2 cut(s) | 543, 1019 |
| BspT104I | TTCGAA | 4 cut(s) | 115, 706, 2257, 2715 |
| BsrDI | GCAATG | 3 cut(s) | 1214, 1279, 2573 |
| BsrI | ACTGG | 6 cut(s) | 75, 501, 1710, 1966, 2536, 2586 |
| BssECI | CCNNGG | 1 cut(s) | 2297 |
| BssMI | GATC | 7 cut(s) | 366, 714, 1162, 1383, 1495, 2671, 2700 |
| BssT1I | CCWWGG | 1 cut(s) | 2297 |
| Bst2UI | CCWGG | 2 cut(s) | 827, 1635 |
| Bst4CI | ACNGT | 4 cut(s) | 401, 565, 673, 2556 |
| Bst6I | CTCTTC | 5 cut(s) | 543, 635, 1019, 1662, 2250 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2032 |
| BstBI | TTCGAA | 4 cut(s) | 115, 706, 2257, 2715 |
| BstC8I | GCNNGC | 2 cut(s) | 1081, 1512 |
| BstDEI | CTNAG | 6 cut(s) | 465, 1247, 1943, 2099, 2491, 2697 |
| BstF5I | GGATG | 8 cut(s) | 145, 539, 550, 941, 1753, 1777, 2691, 2723 |
| BstH2I | RGCGCY | 1 cut(s) | 2006 |
| BstHHI | GCGC | 3 cut(s) | 1938, 2005, 2619 |
| BstKTI | GATC | 7 cut(s) | 369, 717, 1165, 1386, 1498, 2674, 2703 |
| BstMAI | GTCTC | 2 cut(s) | 637, 2459 |
| BstMBI | GATC | 7 cut(s) | 366, 714, 1162, 1383, 1495, 2671, 2700 |
| BstMCI | CGRYCG | 1 cut(s) | 2678 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 155, 1124, 1434, 1933, 2032, 2173 |
| BstNI | CCWGG | 2 cut(s) | 827, 1635 |
| BstNSI | RCATGY | 5 cut(s) | 250, 1376, 1441, 1681, 2400 |
| BstSCI | CCNGG | 2 cut(s) | 825, 1633 |
| BstSFI | CTRYAG | 2 cut(s) | 2443, 2508 |
| BstSLI | GKGCMC | 1 cut(s) | 1820 |
| BstV1I | GCAGC | 2 cut(s) | 1057, 1183 |
| BstV2I | GAAGAC | 7 cut(s) | 462, 495, 1137, 1581, 2361, 2393, 2576 |
| BstX2I | RGATCY | 1 cut(s) | 2700 |
| BstYI | RGATCY | 1 cut(s) | 2700 |
| BsuRI | GGCC | 8 cut(s) | 5, 149, 206, 408, 1107, 1474, 1633, 2586 |
| BtgZI | GCGATG | 1 cut(s) | 782 |
| BtrI | CACGTC | 1 cut(s) | 844 |
| BtsCI | GGATG | 8 cut(s) | 145, 539, 550, 941, 1753, 1777, 2691, 2723 |
| BtsI | GCAGTG | 2 cut(s) | 2309, 2381 |
| BtsIMutI | CAGTG | 7 cut(s) | 82, 1703, 2309, 2381, 2499, 2561, 2579 |
| BveI | ACCTGC | 1 cut(s) | 1941 |
| Cac8I | GCNNGC | 2 cut(s) | 1081, 1512 |
| CfoI | GCGC | 3 cut(s) | 1938, 2005, 2619 |
| Cfr13I | GGNCC | 1 cut(s) | 2584 |
| CsiI | ACCWGGT | 1 cut(s) | 825 |
| Csp6I | GTAC | 4 cut(s) | 250, 397, 2363, 2684 |
| CviQI | GTAC | 4 cut(s) | 250, 397, 2363, 2684 |
| DdeI | CTNAG | 6 cut(s) | 465, 1247, 1943, 2099, 2491, 2697 |
| DpnI | GATC | 7 cut(s) | 368, 716, 1164, 1385, 1497, 2673, 2702 |
| DpnII | GATC | 7 cut(s) | 366, 714, 1162, 1383, 1495, 2671, 2700 |
| DraI | TTTAAA | 1 cut(s) | 2043 |
| EaeI | YGGCCR | 1 cut(s) | 1631 |
| Eam1104I | CTCTTC | 5 cut(s) | 543, 635, 1019, 1662, 2250 |
| EarI | CTCTTC | 5 cut(s) | 543, 635, 1019, 1662, 2250 |
| Ecl136II | GAGCTC | 1 cut(s) | 1012 |
| Eco130I | CCWWGG | 1 cut(s) | 2297 |
| Eco147I | AGGCCT | 1 cut(s) | 1107 |
| Eco24I | GRGCYC | 1 cut(s) | 1014 |
| Eco32I | GATATC | 1 cut(s) | 223 |
| Eco53kI | GAGCTC | 1 cut(s) | 1012 |
| Eco57I | CTGAAG | 3 cut(s) | 186, 453, 1377 |
| EcoICRI | GAGCTC | 1 cut(s) | 1012 |
| EcoRI | GAATTC | 2 cut(s) | 233, 722 |
| EcoRII | CCWGG | 2 cut(s) | 825, 1633 |
| EcoRV | GATATC | 1 cut(s) | 223 |
| EcoT14I | CCWWGG | 1 cut(s) | 2297 |
| EcoT22I | ATGCAT | 3 cut(s) | 664, 1494, 2419 |
| EcoT38I | GRGCYC | 1 cut(s) | 1014 |
| ErhI | CCWWGG | 1 cut(s) | 2297 |
| Esp3I | CGTCTC | 1 cut(s) | 2459 |
| FaqI | GGGAC | 3 cut(s) | 2008, 2078, 2615 |
| FauI | CCCGC | 1 cut(s) | 2724 |
| FauNDI | CATATG | 1 cut(s) | 2419 |
| FbaI | TGATCA | 1 cut(s) | 714 |
| FblI | GTMKAC | 1 cut(s) | 696 |
| Fnu4HI | GCNGC | 3 cut(s) | 775, 1046, 1172 |
| FokI | GGATG | 8 cut(s) | 152, 546, 557, 928, 1760, 1784, 2678, 2710 |
| FriOI | GRGCYC | 1 cut(s) | 1014 |
| Fsp4HI | GCNGC | 3 cut(s) | 775, 1046, 1172 |
| GlaI | GCGC | 3 cut(s) | 1937, 2004, 2618 |
| GluI | GCNGC | 3 cut(s) | 775, 1046, 1172 |
| GsuI | CTGGAG | 2 cut(s) | 2483, 2519 |
| HaeII | RGCGCY | 1 cut(s) | 2006 |
| HaeIII | GGCC | 8 cut(s) | 5, 149, 206, 408, 1107, 1474, 1633, 2586 |
| HapII | CCGG | 2 cut(s) | 1769, 2222 |
| HhaI | GCGC | 3 cut(s) | 1938, 2005, 2619 |
| Hin6I | GCGC | 3 cut(s) | 1936, 2003, 2617 |
| HinP1I | GCGC | 3 cut(s) | 1936, 2003, 2617 |
| HincII | GTYRAC | 3 cut(s) | 802, 1521, 1959 |
| HindII | GTYRAC | 3 cut(s) | 802, 1521, 1959 |
| HindIII | AAGCTT | 3 cut(s) | 126, 709, 2261 |
| HpaI | GTTAAC | 1 cut(s) | 802 |
| HpaII | CCGG | 2 cut(s) | 1769, 2222 |
| HphI | GGTGA | 5 cut(s) | 649, 965, 1378, 2236, 2533 |
| Hpy166II | GTNNAC | 8 cut(s) | 697, 802, 973, 1058, 1521, 1783, 1959, 2240 |
| Hpy188I | TCNGA | 6 cut(s) | 197, 433, 1500, 2059, 2394, 2658 |
| Hpy8I | GTNNAC | 8 cut(s) | 697, 802, 973, 1058, 1521, 1783, 1959, 2240 |
| Hpy99I | CGWCG | 2 cut(s) | 1559, 1593 |
| HpyCH4III | ACNGT | 4 cut(s) | 401, 565, 673, 2556 |
| HpyCH4IV | ACGT | 5 cut(s) | 328, 683, 843, 2289, 2468 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 155, 1124, 1434, 1933, 2032, 2173 |
| HpyF3I | CTNAG | 6 cut(s) | 465, 1247, 1943, 2099, 2491, 2697 |
| HpySE526I | ACGT | 5 cut(s) | 328, 683, 843, 2289, 2468 |
| HspAI | GCGC | 3 cut(s) | 1936, 2003, 2617 |
| Ksp22I | TGATCA | 1 cut(s) | 714 |
| KspAI | GTTAAC | 1 cut(s) | 802 |
| Kzo9I | GATC | 7 cut(s) | 366, 714, 1162, 1383, 1495, 2671, 2700 |
| LguI | GCTCTTC | 2 cut(s) | 543, 1019 |
| LmnI | GCTCC | 3 cut(s) | 109, 419, 1009 |
| Lsp1109I | GCAGC | 2 cut(s) | 1057, 1183 |
| LweI | GCATC | 9 cut(s) | 130, 201, 950, 1207, 1479, 1491, 1762, 1861, 2514 |
| MabI | ACCWGGT | 1 cut(s) | 825 |
| MaeII | ACGT | 5 cut(s) | 328, 683, 843, 2289, 2468 |
| MaeIII | GTNAC | 5 cut(s) | 13, 345, 792, 916, 1440 |
| MalI | GATC | 7 cut(s) | 368, 716, 1164, 1385, 1497, 2673, 2702 |
| MboI | GATC | 7 cut(s) | 366, 714, 1162, 1383, 1495, 2671, 2700 |
| MfeI | CAATTG | 1 cut(s) | 1271 |
| MflI | RGATCY | 1 cut(s) | 2700 |
| MhlI | GDGCHC | 2 cut(s) | 1014, 1820 |
| MlsI | TGGCCA | 1 cut(s) | 1633 |
| MluNI | TGGCCA | 1 cut(s) | 1633 |
| MlyI | GAGTC | 5 cut(s) | 476, 821, 1726, 1850, 2086 |
| MmeI | TCCRAC | 1 cut(s) | 1381 |
| Mox20I | TGGCCA | 1 cut(s) | 1633 |
| Mph1103I | ATGCAT | 3 cut(s) | 664, 1494, 2419 |
| MroXI | GAANNNNTTC | 5 cut(s) | 128, 438, 1028, 1107, 2217 |
| MscI | TGGCCA | 1 cut(s) | 1633 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1078 |
| Msp20I | TGGCCA | 1 cut(s) | 1633 |
| MspI | CCGG | 2 cut(s) | 1769, 2222 |
| MspR9I | CCNGG | 2 cut(s) | 827, 1635 |
| MunI | CAATTG | 1 cut(s) | 1271 |
| Mva1269I | GAATGC | 2 cut(s) | 769, 1028 |
| MvaI | CCWGG | 2 cut(s) | 827, 1635 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 155, 1124, 1434, 1933, 2032, 2173 |
| NdeI | CATATG | 1 cut(s) | 2419 |
| NdeII | GATC | 7 cut(s) | 366, 714, 1162, 1383, 1495, 2671, 2700 |
| NlaIV | GGNNCC | 1 cut(s) | 1966 |
| NmeAIII | GCCGAG | 2 cut(s) | 1500, 1552 |
| NsiI | ATGCAT | 3 cut(s) | 664, 1494, 2419 |
| NspI | RCATGY | 5 cut(s) | 250, 1376, 1441, 1681, 2400 |
| NspV | TTCGAA | 4 cut(s) | 115, 706, 2257, 2715 |
| PceI | AGGCCT | 1 cut(s) | 1107 |
| PciI | ACATGT | 4 cut(s) | 246, 1372, 1677, 2396 |
| PciSI | GCTCTTC | 2 cut(s) | 543, 1019 |
| PctI | GAATGC | 2 cut(s) | 769, 1028 |
| PdmI | GAANNNNTTC | 5 cut(s) | 128, 438, 1028, 1107, 2217 |
| PfeI | GAWTC | 5 cut(s) | 268, 388, 909, 1648, 2054 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1090 |
| PkrI | GCNGC | 3 cut(s) | 776, 1047, 1173 |
| PleI | GAGTC | 5 cut(s) | 475, 820, 1726, 1849, 2086 |
| PpsI | GAGTC | 5 cut(s) | 475, 820, 1726, 1849, 2086 |
| PscI | ACATGT | 4 cut(s) | 246, 1372, 1677, 2396 |
| PsiI | TTATAA | 1 cut(s) | 2645 |
| Psp124BI | GAGCTC | 1 cut(s) | 1014 |
| Psp6I | CCWGG | 2 cut(s) | 825, 1633 |
| PspGI | CCWGG | 2 cut(s) | 825, 1633 |
| PspN4I | GGNNCC | 1 cut(s) | 1966 |
| PspPI | GGNCC | 1 cut(s) | 2584 |
| PstI | CTGCAG | 1 cut(s) | 2447 |
| PsuI | RGATCY | 1 cut(s) | 2700 |
| RsaI | GTAC | 4 cut(s) | 251, 398, 2364, 2685 |
| RsaNI | GTAC | 4 cut(s) | 250, 397, 2363, 2684 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1078 |
| SacI | GAGCTC | 1 cut(s) | 1014 |
| SapI | GCTCTTC | 2 cut(s) | 543, 1019 |
| SatI | GCNGC | 3 cut(s) | 775, 1046, 1172 |
| Sau3AI | GATC | 7 cut(s) | 366, 714, 1162, 1383, 1495, 2671, 2700 |
| Sau96I | GGNCC | 1 cut(s) | 2584 |
| SchI | GAGTC | 5 cut(s) | 476, 821, 1726, 1850, 2086 |
| ScrFI | CCNGG | 2 cut(s) | 827, 1635 |
| SduI | GDGCHC | 2 cut(s) | 1014, 1820 |
| SexAI | ACCWGGT | 1 cut(s) | 825 |
| SfaNI | GCATC | 9 cut(s) | 130, 201, 950, 1207, 1479, 1491, 1762, 1861, 2514 |
| SfcI | CTRYAG | 2 cut(s) | 2443, 2508 |
| SfuI | TTCGAA | 4 cut(s) | 115, 706, 2257, 2715 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1078 |
| SmlI | CTYRAG | 2 cut(s) | 50, 1795 |
| SmoI | CTYRAG | 2 cut(s) | 50, 1795 |
| SpeI | ACTAGT | 1 cut(s) | 796 |
| SseBI | AGGCCT | 1 cut(s) | 1107 |
| SsiI | CCGC | 5 cut(s) | 775, 1858, 2249, 2669, 2731 |
| SstI | GAGCTC | 1 cut(s) | 1014 |
| StuI | AGGCCT | 1 cut(s) | 1107 |
| StyD4I | CCNGG | 2 cut(s) | 825, 1633 |
| StyI | CCWWGG | 1 cut(s) | 2297 |
| TaaI | ACNGT | 4 cut(s) | 401, 565, 673, 2556 |
| TaiI | ACGT | 5 cut(s) | 331, 686, 846, 2292, 2471 |
| TaqII | GACCGA | 1 cut(s) | 2664 |
| TatI | WGTACW | 1 cut(s) | 2362 |
| TauI | GCSGC | 1 cut(s) | 777 |
| TfiI | GAWTC | 5 cut(s) | 268, 388, 909, 1648, 2054 |
| TscAI | CASTG | 7 cut(s) | 82, 1710, 2316, 2388, 2499, 2561, 2586 |
| TseI | GCWGC | 2 cut(s) | 1045, 1171 |
| TspGWI | ACGGA | 1 cut(s) | 1421 |
| TspRI | CASTG | 7 cut(s) | 82, 1710, 2316, 2388, 2499, 2561, 2586 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1090 |
| XapI | RAATTY | 6 cut(s) | 233, 722, 757, 1807, 2473, 2482 |
| XbaI | TCTAGA | 3 cut(s) | 835, 1201, 1735 |
| XceI | RCATGY | 5 cut(s) | 250, 1376, 1441, 1681, 2400 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 315, 823, 1156 |
| XmiI | GTMKAC | 1 cut(s) | 696 |
| XmnI | GAANNNNTTC | 5 cut(s) | 128, 438, 1028, 1107, 2217 |
| Zsp2I | ATGCAT | 3 cut(s) | 664, 1494, 2419 |