AT3G23560

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
8453903 .. 8456708
2806 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23560.1

Sequence Viewer

Length: 1434 bp
ATGGCTGATCCGGCAACGAGTTCTCCGTTGTTGGATGACCATGTAGGTGGAGAAGATGAAAGAGGAAGGAGATCAAGATCATCAACTTTGGTTCAAAAAGTGATCGACGTGGAAGAAGCAAAAGCTCAAATGATTTACTCTTTGCCAATGATACTCACCAATGTTTTCTACTACTGTATTCCTATAACTTCTGTGATGTTTGCTTCTCACCTCGGTCAACTCGAGCTCGCCGGTGCCACCCTTGCCAATTCTTGGGCCACCGTCTCCGGTTTTGCCTTCATGGTAGGGTTAAGTGGATCACTTGAGACATTATGTGGACAAGGCTTTGGTGCAAAAAGATACAGGATGTTGGGAGTTCATCTACAATCATCTTGCATCGTTTCATTAGTTTTCAGCATCCTCATCACCATCTTCTGGTTCTTCACAGAATCGATTTTTGGACTTCTCAGACAAGATCCTAGCATTTCAAAACAAGCTGCACTCTATATGAAGTACCAAGCTCCCGGTTTACTAGCTTACGGGTTTTTACAAAATATTTTGAGATTTTGCCAAACACAATCGATCATTGCTCCACTAGTCATCTTCTCGTTTGTTCCCTTGGTGATAAACATTGCTACCGCATATGTTCTTGTTTATGTAGCTGGGCTTGGATTCATTGGTGCTCCAATAGCTACATCTATTTCATTGTGGATAGCTTTCCTTTCGCTTGGAACTTATGTGATGTGTTCAGAAAAGTTTAAGGAAACATGGACTGGATTTTCGTTGGAATCATTCCGTTATATCGTAATAAACTTGACATTAAGCCTCCCTTCTGCTGCTATGGTATGTTTGGAATATTGGGCATTCGAGATTCTTGTGTTCTTGGCAGGAGTGATGCCAAACCCGGAAATCAATACTTCTTTGGTCGCTATATGCGTCAACACGGAGGCGATTAGCTACATGTTAACATACGGACTTAGTGCAGCTGCAAGTACGCGTGTGTCCAATGAACTTGGAGCAGGAAATGTAAAAGGCGCAAAGAAGGCGACCTCTGTGTCCGTAAAGTTGTCTTTAGTTCTTGCTCTCGGCGTTGTAATTGTTTTACTCGTAGGTCATGATGGTTGGGTTGGGTTATTTAGCGATAGCTATGTGATTAAAGAGGAGTTTGCATCATTGAGGTTTTTTCTTGCTGCCTCTATAACTCTTGATTCAATCCAAGGAGTTTTATCAGGAGTTGCAAGAGGATGCGGATGGCAGCGTTTAGTCACGGTTATAAATTTGGCGACATTCTACTTAATTGGAATGCCGATTGCCGCCTTTTGTGGTTTCAAGTTGAAGTTTTATGCCAAGGGTTTGTGGATTGGTTTGATATGTGGAATATTTTGCCAATCATCATCTCTTTTGCTTATGACAATATTCCGGAAGTGGACAAAGCTGAATGTTGCTACGGTCTGA

Protein Analysis

477

Amino Acids

51.85

Weight (kDa)

8.55

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 49 - 209 4.5e-32 MatE
MatE PF01554 270 - 431 2.1e-24 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000715)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1253
AasI GACNNNNNNGTC 1 cut(s) 1033
AccB1I GGYRCC 1 cut(s) 233
AccB7I CCANNNNNTGG 2 cut(s) 252, 414
AccII CGCG 1 cut(s) 976
AccIII TCCGGA 1 cut(s) 1398
AciI CCGC 3 cut(s) 618, 1227, 1293
AclWI GGATC 3 cut(s) 2, 304, 449
AcsI RAATTY 1 cut(s) 1255
AfaI GTAC 2 cut(s) 494, 973
AfiI CCNNNNNNNGG 2 cut(s) 252, 414
AflIII ACRYGT 2 cut(s) 939, 974
AgsI TTSAA 5 cut(s) 95, 468, 1191, 1309, 1315
AhlI ACTAGT 1 cut(s) 574
AjiI CACGTC 1 cut(s) 109
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
Alw21I GWGCWC 2 cut(s) 228, 664
Alw26I GTCTC 2 cut(s) 268, 299
AlwI GGATC 3 cut(s) 2, 304, 449
Ama87I CYCGRG 1 cut(s) 221
Aor13HI TCCGGA 1 cut(s) 1398
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 6 cut(s) 476, 815, 962, 965, 1169, 1234
ApoI RAATTY 1 cut(s) 1255
ArsI GACNNNNNNTTYG 2 cut(s) 742, 774
AspLEI GCGC 1 cut(s) 1016
AspS9I GGNCC 1 cut(s) 255
AsuC2I CCSGG 2 cut(s) 504, 884
AsuHPI GGTGA 4 cut(s) 148, 200, 397, 613
AvaI CYCGRG 1 cut(s) 221
BanI GGYRCC 1 cut(s) 233
BanII GRGCYC 1 cut(s) 228
Bbv12I GWGCWC 2 cut(s) 228, 664
BbvI GCAGC 6 cut(s) 463, 802, 952, 974, 1156, 1246
BccI CCATC 3 cut(s) 416, 1091, 1224
BcnI CCSGG 2 cut(s) 504, 884
BcoDI GTCTC 2 cut(s) 268, 299
BcuI ACTAGT 1 cut(s) 574
BfaI CTAG 3 cut(s) 459, 512, 575
BisI GCNGC 7 cut(s) 477, 816, 963, 966, 1170, 1235, 1293
BlsI GCNGC 7 cut(s) 478, 817, 964, 967, 1171, 1236, 1294
Bme1390I CCNGG 2 cut(s) 504, 884
BmeT110I CYCGRG 1 cut(s) 221
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 235
BmrFI CCNGG 2 cut(s) 504, 884
BmsI GCATC 5 cut(s) 384, 405, 864, 1157, 1214
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 2 cut(s) 504, 884
Bsa29I ATCGAT 2 cut(s) 431, 560
BsaBI GATNNNNATC 1 cut(s) 76
BsaJI CCNNGG 4 cut(s) 211, 597, 1195, 1326
BsaWI WCCGGW 2 cut(s) 266, 1398
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 414
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 757
Bse3DI GCAATG 2 cut(s) 564, 609
Bse8I GATNNNNATC 1 cut(s) 76
BseAI TCCGGA 1 cut(s) 1398
BseCI ATCGAT 2 cut(s) 431, 560
BseDI CCNNGG 4 cut(s) 211, 597, 1195, 1326
BseGI GGATG 5 cut(s) 40, 351, 396, 1229, 1235
BseJI GATNNNNATC 1 cut(s) 76
BseLI CCNNNNNNNGG 2 cut(s) 252, 414
BseMI GCAATG 2 cut(s) 564, 609
BseMII CTCAG 1 cut(s) 460
BseNI ACTGG 1 cut(s) 757
BseRI GAGGAG 1 cut(s) 1154
BseXI GCAGC 6 cut(s) 463, 802, 952, 974, 1156, 1246
BseYI CCCAGC 1 cut(s) 641
BsgI GTGCAG 2 cut(s) 462, 981
Bsh1236I CGCG 1 cut(s) 976
BshFI GGCC 1 cut(s) 257
BshNI GGYRCC 1 cut(s) 233
BshVI ATCGAT 2 cut(s) 431, 560
BsiHKAI GWGCWC 2 cut(s) 228, 664
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 6 cut(s) 11, 231, 267, 504, 884, 1399
BslI CCNNNNNNNGG 2 cut(s) 252, 414
BsmAI GTCTC 2 cut(s) 268, 299
BsmBI CGTCTC 1 cut(s) 268
BsmI GAATGC 2 cut(s) 842, 1287
BsnI GGCC 1 cut(s) 257
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 2 cut(s) 228, 664
Bsp13I TCCGGA 1 cut(s) 1398
Bsp143I GATC 7 cut(s) 7, 71, 77, 102, 296, 454, 561
BspACI CCGC 3 cut(s) 618, 1227, 1293
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 1 cut(s) 459
BspDI ATCGAT 2 cut(s) 431, 560
BspEI TCCGGA 1 cut(s) 1398
BspFNI CGCG 1 cut(s) 976
BspHI TCATGA 1 cut(s) 1093
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 3 cut(s) 2, 304, 449
BspT107I GGYRCC 1 cut(s) 233
BsrDI GCAATG 2 cut(s) 564, 609
BsrFI RCCGGY 1 cut(s) 230
BsrI ACTGG 1 cut(s) 757
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 4 cut(s) 211, 597, 1195, 1326
BssMI GATC 7 cut(s) 7, 71, 77, 102, 296, 454, 561
BssT1I CCWWGG 3 cut(s) 597, 1195, 1326
Bst4CI ACNGT 4 cut(s) 176, 262, 1249, 1429
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 2 cut(s) 446, 956
BstF5I GGATG 5 cut(s) 40, 351, 396, 1229, 1235
BstFNI CGCG 1 cut(s) 976
BstHHI GCGC 1 cut(s) 1016
BstKTI GATC 7 cut(s) 10, 74, 80, 105, 299, 457, 564
BstMAI GTCTC 2 cut(s) 268, 299
BstMBI GATC 7 cut(s) 7, 71, 77, 102, 296, 454, 561
BstMWI GCNNNNNNNGC 4 cut(s) 11, 242, 668, 1022
BstNSI RCATGY 1 cut(s) 943
BstSCI CCNGG 2 cut(s) 502, 882
BstUI CGCG 1 cut(s) 976
BstV1I GCAGC 6 cut(s) 463, 802, 952, 974, 1156, 1246
BstX2I RGATCY 1 cut(s) 454
BstXI CCANNNNNNTGG 1 cut(s) 47
BstYI RGATCY 1 cut(s) 454
Bsu15I ATCGAT 2 cut(s) 431, 560
BsuRI GGCC 1 cut(s) 257
BsuTUI ATCGAT 2 cut(s) 431, 560
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 5 cut(s) 40, 351, 396, 1229, 1235
Cac8I GCNNGC 1 cut(s) 228
CciI TCATGA 1 cut(s) 1093
CfoI GCGC 1 cut(s) 1016
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 255
ClaI ATCGAT 2 cut(s) 431, 560
CseI GACGC 1 cut(s) 904
Csp6I GTAC 2 cut(s) 493, 972
CviAII CATG 5 cut(s) 41, 280, 747, 940, 1094
CviQI GTAC 2 cut(s) 493, 972
DdeI CTNAG 2 cut(s) 446, 956
DpnI GATC 7 cut(s) 9, 73, 79, 104, 298, 456, 563
DpnII GATC 7 cut(s) 7, 71, 77, 102, 296, 454, 561
DrdI GACNNNNNNGTC 1 cut(s) 1033
DseDI GACNNNNNNGTC 1 cut(s) 1033
Ecl136II GAGCTC 1 cut(s) 226
Eco130I CCWWGG 3 cut(s) 597, 1195, 1326
Eco24I GRGCYC 1 cut(s) 228
Eco53kI GAGCTC 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 226
EcoT14I CCWWGG 3 cut(s) 597, 1195, 1326
EcoT38I GRGCYC 1 cut(s) 228
ErhI CCWWGG 3 cut(s) 597, 1195, 1326
Esp3I CGTCTC 1 cut(s) 268
FaeI CATG 5 cut(s) 44, 283, 750, 943, 1097
FalI AAGNNNNNCTT 2 cut(s) 793, 825
FatI CATG 5 cut(s) 40, 279, 746, 939, 1093
FauNDI CATATG 1 cut(s) 622
Fnu4HI GCNGC 7 cut(s) 477, 816, 963, 966, 1170, 1235, 1293
FokI GGATG 5 cut(s) 47, 358, 383, 1236, 1242
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 7 cut(s) 477, 816, 963, 966, 1170, 1235, 1293
FspBI CTAG 3 cut(s) 459, 512, 575
GlaI GCGC 1 cut(s) 1015
GluI GCNGC 7 cut(s) 477, 816, 963, 966, 1170, 1235, 1293
GsaI CCCAGC 1 cut(s) 645
HaeIII GGCC 1 cut(s) 257
HapII CCGG 6 cut(s) 11, 231, 267, 504, 884, 1399
HgaI GACGC 1 cut(s) 904
HhaI GCGC 1 cut(s) 1016
Hin1II CATG 5 cut(s) 44, 283, 750, 943, 1097
Hin6I GCGC 1 cut(s) 1014
HinP1I GCGC 1 cut(s) 1014
HincII GTYRAC 3 cut(s) 218, 919, 945
HindII GTYRAC 3 cut(s) 218, 919, 945
HinfI GANTC 5 cut(s) 428, 651, 767, 850, 1187
HpaI GTTAAC 1 cut(s) 945
HpaII CCGG 6 cut(s) 11, 231, 267, 504, 884, 1399
HphI GGTGA 4 cut(s) 148, 200, 397, 613
Hpy166II GTNNAC 6 cut(s) 218, 317, 509, 919, 945, 1407
Hpy188I TCNGA 3 cut(s) 449, 730, 1433
Hpy188III TCNNGA 6 cut(s) 75, 847, 1094, 1184, 1209, 1399
Hpy8I GTNNAC 6 cut(s) 218, 317, 509, 919, 945, 1407
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 4 cut(s) 60, 286, 819, 1015
HpyCH4III ACNGT 4 cut(s) 176, 262, 1249, 1429
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 7 cut(s) 332, 375, 479, 962, 968, 1148, 1217
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 242, 668, 1022
HpyF3I CTNAG 2 cut(s) 446, 956
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 5 cut(s) 44, 283, 750, 943, 1097
HspAI GCGC 1 cut(s) 1014
Kpn2I TCCGGA 1 cut(s) 1398
KspAI GTTAAC 1 cut(s) 945
Kzo9I GATC 7 cut(s) 7, 71, 77, 102, 296, 454, 561
LmnI GCTCC 4 cut(s) 505, 574, 667, 995
Lsp1109I GCAGC 6 cut(s) 463, 802, 952, 974, 1156, 1246
LweI GCATC 5 cut(s) 384, 405, 864, 1157, 1214
MaeI CTAG 3 cut(s) 459, 512, 575
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 1243
MalI GATC 7 cut(s) 9, 73, 79, 104, 298, 456, 563
MboI GATC 7 cut(s) 7, 71, 77, 102, 296, 454, 561
MboII GAAGA 5 cut(s) 65, 125, 403, 412, 574
MflI RGATCY 1 cut(s) 454
MhlI GDGCHC 2 cut(s) 228, 664
MluCI AATT 4 cut(s) 247, 1074, 1255, 1275
MluI ACGCGT 1 cut(s) 974
MmeI TCCRAC 2 cut(s) 12, 744
MroI TCCGGA 1 cut(s) 1398
MseI TTAA 6 cut(s) 290, 738, 800, 944, 1134, 1274
MslI CAYNNNNRTG 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 965
MspI CCGG 6 cut(s) 11, 231, 267, 504, 884, 1399
MspR9I CCNGG 2 cut(s) 504, 884
Mva1269I GAATGC 2 cut(s) 842, 1287
MvnI CGCG 1 cut(s) 976
MwoI GCNNNNNNNGC 4 cut(s) 11, 242, 668, 1022
NciI CCSGG 2 cut(s) 504, 884
NdeI CATATG 1 cut(s) 622
NdeII GATC 7 cut(s) 7, 71, 77, 102, 296, 454, 561
NlaIII CATG 5 cut(s) 44, 283, 750, 943, 1097
NlaIV GGNNCC 1 cut(s) 235
NmeAIII GCCGAG 1 cut(s) 1044
NmuCI GTSAC 1 cut(s) 1243
NspI RCATGY 1 cut(s) 943
PaeR7I CTCGAG 1 cut(s) 221
PagI TCATGA 1 cut(s) 1093
PciI ACATGT 1 cut(s) 939
PcsI WCGNNNNNNNCGW 3 cut(s) 23, 219, 912
PctI GAATGC 2 cut(s) 842, 1287
PfeI GAWTC 5 cut(s) 428, 651, 767, 850, 1187
PflMI CCANNNNNTGG 2 cut(s) 252, 414
PkrI GCNGC 7 cut(s) 478, 817, 964, 967, 1171, 1236, 1294
PscI ACATGT 1 cut(s) 939
PsiI TTATAA 1 cut(s) 1253
Psp124BI GAGCTC 1 cut(s) 228
PspFI CCCAGC 1 cut(s) 641
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 255
PspXI VCTCGAGB 1 cut(s) 221
PsuI RGATCY 1 cut(s) 454
PvuII CAGCTG 1 cut(s) 965
RsaI GTAC 2 cut(s) 494, 973
RsaNI GTAC 2 cut(s) 493, 972
RseI CAYNNNNRTG 1 cut(s) 45
SacI GAGCTC 1 cut(s) 228
SaqAI TTAA 6 cut(s) 290, 738, 800, 944, 1134, 1274
SatI GCNGC 7 cut(s) 477, 816, 963, 966, 1170, 1235, 1293
Sau3AI GATC 7 cut(s) 7, 71, 77, 102, 296, 454, 561
Sau96I GGNCC 1 cut(s) 255
ScrFI CCNGG 2 cut(s) 504, 884
SduI GDGCHC 2 cut(s) 228, 664
SfaNI GCATC 5 cut(s) 384, 405, 864, 1157, 1214
Sfr274I CTCGAG 1 cut(s) 221
SgrAI CRCCGGYG 1 cut(s) 230
SlaI CTCGAG 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 45
SmlI CTYRAG 2 cut(s) 221, 302
SmoI CTYRAG 2 cut(s) 221, 302
SpeI ACTAGT 1 cut(s) 574
Sse9I AATT 4 cut(s) 247, 1074, 1255, 1275
SsiI CCGC 3 cut(s) 618, 1227, 1293
SspI AATATT 4 cut(s) 535, 836, 1359, 1395
SspMI CTAG 3 cut(s) 459, 512, 575
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 2 cut(s) 502, 882
StyI CCWWGG 3 cut(s) 597, 1195, 1326
TaaI ACNGT 4 cut(s) 176, 262, 1249, 1429
TaiI ACGT 1 cut(s) 111
TaqI TCGA 5 cut(s) 105, 222, 431, 560, 846
TaqII GACCGA 1 cut(s) 203
TasI AATT 4 cut(s) 247, 1074, 1255, 1275
TauI GCSGC 1 cut(s) 1295
TfiI GAWTC 5 cut(s) 428, 651, 767, 850, 1187
Tru1I TTAA 6 cut(s) 290, 738, 800, 944, 1134, 1274
Tru9I TTAA 6 cut(s) 290, 738, 800, 944, 1134, 1274
TseFI GTSAC 1 cut(s) 1243
TseI GCWGC 6 cut(s) 476, 815, 962, 965, 1169, 1234
Tsp45I GTSAC 1 cut(s) 1243
TspDTI ATGAA 8 cut(s) 72, 268, 347, 372, 503, 643, 672, 1002
TspGWI ACGGA 5 cut(s) 15, 764, 938, 966, 1027
Van91I CCANNNNNTGG 2 cut(s) 252, 414
XapI RAATTY 1 cut(s) 1255
XceI RCATGY 1 cut(s) 943
XhoI CTCGAG 1 cut(s) 221
XspI CTAG 3 cut(s) 459, 512, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.