Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000715

Physical Location & Seq

Genomic Coordinates Forward (+)

66481360 .. 66482092

Gene Structure 733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00047000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAGTTCACATATTGTGGTAGCAGTACAAGGGTGTCAAATGAATTGGGGGCAGGCAACCCGGGTCGAGCAAAGAATGCAATGCTTGTGACTCTTAAGCTCTCGCTGATTCTTTCTTTCACAATTGTTCTGGCTTTGACATTTGGTCACAATATCTGGGCACGCTTCTTCATTGACAGCAGTTCAAATTATTCAGAACTGATAGAGGACTTTGCTTCTATGACACCACTTCTTGCAGTTTCAATAATTCTTGATTCCTTGCAAGGTGTCTTTTCAGGTGTGGCAAGAGGATGTGGGTGGCAGCACTTGGCTGTGTATGTGAACTTGGGAACATTCTACTTCATTGGCATGACAATTGCTGGTCTTCTTGGATTTGAGTTCAAACTTTATGCCAAGGGCTTATGGATTGGCTTGATCTGTGGTCTCTTCTGTCAAGCAAGCACACTGTTGTTGATTACGCAGCTCAAGAAATGGACATCTGACTTCTCTCAAAATCCCAAAGAAAGAAAACCAATTTTGGAGCCTAGCTACATAAGTGTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009636 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043207 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

181

Amino Acids

19.9

Weight (kDa)

8.36

Isoelectric Point (pI)

27.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	6 - 119	5.7e-17	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23550 AT3G23560 AT3G23560
fragaria_vesca	FvH4_1g15630 FvH4_1g15630 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19720 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_5g31740 FvH4_7g19991
malus_domestica	MD03G1230300.v1.1 MD11G1250700.v1.1 MD11G1251300.v1.1 MD11G1251400.v1.1 MD11G1251500.v1.1 MD12G1088700.v1.1
prunus_persica	Prupe.4G177700_v2.0.a1 Prupe.4G177700_v2.0.a1 Prupe.4G177900_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G206700_v2.0.a1
pyrus_communis	pycom03g17780 pycom10g06980 pycom11g22170 pycom11g22270
rosa_chinensis	RchiOBHm_Chr5g0033011 RchiOBHm_Chr5g0033061
rosa_laevigata	RLG00000033443 RLG00000033445
rosa_multiflora	Rmu_sc0000986.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046880 Rroxscaffold_1G00046890 Rroxscaffold_1G00046990 Rroxscaffold_1G00047000 Rroxscaffold_1G00047040
rosa_rugosa	Rorug05G0135000 Rorug05G0135100 Rorug05G0135200 Rorug05G0135500 Rorug05G0135600 Rorug05G0135700 Rorug05G0135800
rosa_samantha	Rh5AG227700 Rh5AG228200 Rh5BG229300 Rh5BG229400 Rh5CG256700 Rh5CG257200 Rh5DG233900 Rh5DG234100
rosa_wichuraiana	Rw5G020860 Rw5G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	28
AflII	CTTAAG	1 cut(s)	95
AgsI	TTSAA	3 cut(s)	186, 243, 382
AhdI	GACNNNNNGTC	1 cut(s)	144
AluBI	AGCT	3 cut(s)	100, 463, 528
AluI	AGCT	3 cut(s)	100, 463, 528
Alw26I	GTCTC	1 cut(s)	428
Ama87I	CYCGRG	1 cut(s)	61
ApeKI	GCWGC	2 cut(s)	301, 460
AsuC2I	CCSGG	2 cut(s)	62, 63
AvaI	CYCGRG	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	356
BbvI	GCAGC	2 cut(s)	313, 472
BcnI	CCSGG	2 cut(s)	62, 63
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	1 cut(s)	525
BfrI	CTTAAG	1 cut(s)	95
BisI	GCNGC	2 cut(s)	302, 461
BlsI	GCNGC	2 cut(s)	303, 462
Bme1390I	CCNGG	2 cut(s)	62, 63
BmeRI	GACNNNNNGTC	1 cut(s)	144
BmeT110I	CYCGRG	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	522
BmrFI	CCNGG	2 cut(s)	62, 63
BpiI	GAAGAC	1 cut(s)	356
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	2 cut(s)	62, 63
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	2 cut(s)	61, 393
Bse3DI	GCAATG	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	61, 393
BseGI	GGATG	1 cut(s)	296
BseMI	GCAATG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	313, 472
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	428
BsmI	GAATGC	1 cut(s)	82
Bso31I	GGTCTC	1 cut(s)	428
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	522
BspTI	CTTAAG	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	87
BssECI	CCNNGG	2 cut(s)	61, 393
BssMI	GATC	1 cut(s)	414
BssT1I	CCWWGG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	447
Bst6I	CTCTTC	1 cut(s)	431
BstAFI	CTTAAG	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstC8I	GCNNGC	3 cut(s)	55, 163, 439
BstF5I	GGATG	1 cut(s)	296
BstKTI	GATC	1 cut(s)	417
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	1 cut(s)	414
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstSCI	CCNGG	2 cut(s)	60, 61
BstSLI	GKGCMC	1 cut(s)	163
BstV1I	GCAGC	2 cut(s)	313, 472
BstV2I	GAAGAC	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	296
BtsIMutI	CAGTG	1 cut(s)	443
Cac8I	GCNNGC	3 cut(s)	55, 163, 439
Cfr9I	CCCGGG	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	1 cut(s)	349
CviJI	RGCY	8 cut(s)	100, 134, 311, 399, 411, 463, 523, 528
CviKI_1	RGCY	8 cut(s)	100, 134, 311, 399, 411, 463, 523, 528
CviQI	GTAC	1 cut(s)	27
DpnI	GATC	1 cut(s)	416
DpnII	GATC	1 cut(s)	414
DriI	GACNNNNNGTC	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	431
Eam1105I	GACNNNNNGTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	431
Eco130I	CCWWGG	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	428
Eco88I	CYCGRG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	1 cut(s)	352
FaiI	YATR	8 cut(s)	13, 221, 318, 350, 390, 403, 533, 544
FatI	CATG	1 cut(s)	348
Fnu4HI	GCNGC	2 cut(s)	302, 461
FokI	GGATG	1 cut(s)	303
Fsp4HI	GCNGC	2 cut(s)	302, 461
FspBI	CTAG	1 cut(s)	525
GluI	GCNGC	2 cut(s)	302, 461
HapII	CCGG	1 cut(s)	62
Hin1II	CATG	1 cut(s)	352
HinfI	GANTC	3 cut(s)	91, 109, 254
HpaII	CCGG	1 cut(s)	62
Hpy166II	GTNNAC	2 cut(s)	9, 322
Hpy188I	TCNGA	2 cut(s)	196, 481
Hpy188III	TCNNGA	2 cut(s)	251, 466
Hpy8I	GTNNAC	2 cut(s)	9, 322
HpyCH4III	ACNGT	1 cut(s)	447
HpyCH4V	TGCA	3 cut(s)	80, 236, 262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	414
LmnI	GCTCC	1 cut(s)	520
LpnPI	CCDG	6 cut(s)	39, 75, 116, 142, 261, 345
Lsp1109I	GCAGC	2 cut(s)	313, 472
MaeI	CTAG	1 cut(s)	525
MaeIII	GTNAC	2 cut(s)	88, 146
MalI	GATC	1 cut(s)	416
MboI	GATC	1 cut(s)	414
MboII	GAAGA	3 cut(s)	160, 356, 418
MfeI	CAATTG	2 cut(s)	123, 354
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	6 cut(s)	44, 123, 187, 246, 354, 513
MlyI	GAGTC	1 cut(s)	85
MnlI	CCTC	2 cut(s)	199, 281
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	2 cut(s)	347, 536
MspCI	CTTAAG	1 cut(s)	95
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	2 cut(s)	62, 63
MunI	CAATTG	2 cut(s)	123, 354
Mva1269I	GAATGC	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	77
NciI	CCSGG	2 cut(s)	62, 63
NdeII	GATC	1 cut(s)	414
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	1 cut(s)	522
NmuCI	GTSAC	2 cut(s)	88, 146
PctI	GAATGC	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	109, 254
PkrI	GCNGC	2 cut(s)	303, 462
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	522
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
RseI	CAYNNNNRTG	2 cut(s)	347, 536
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	2 cut(s)	302, 461
Sau3AI	GATC	1 cut(s)	414
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	2 cut(s)	62, 63
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	5 cut(s)	102, 268, 280, 465, 530
SmaI	CCCGGG	1 cut(s)	63
SmiMI	CAYNNNNRTG	2 cut(s)	347, 536
SmlI	CTYRAG	2 cut(s)	95, 464
SmoI	CTYRAG	2 cut(s)	95, 464
Sse9I	AATT	6 cut(s)	44, 123, 187, 246, 354, 513
SspMI	CTAG	1 cut(s)	525
StyD4I	CCNGG	2 cut(s)	60, 61
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	447
TaqI	TCGA	1 cut(s)	67
TasI	AATT	6 cut(s)	44, 123, 187, 246, 354, 513
TatI	WGTACW	1 cut(s)	26
TfiI	GAWTC	2 cut(s)	109, 254
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	450
TseFI	GTSAC	2 cut(s)	88, 146
TseI	GCWGC	2 cut(s)	301, 460
Tsp45I	GTSAC	2 cut(s)	88, 146
TspDTI	ATGAA	3 cut(s)	57, 160, 331
TspMI	CCCGGG	1 cut(s)	61
TspRI	CASTG	1 cut(s)	450
Vha464I	CTTAAG	1 cut(s)	95
XmaI	CCCGGG	1 cut(s)	61
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.