FvH4_3g19700

MATE efflux family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000715
Physical Location & Seq
Forward (+)
12888562 .. 12893082
4521 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19700.t2

Sequence Viewer

Length: 1443 bp
ATGCCAGAAAACACAGCAAGTTCAGATACTAATGCAGCAGTGCCCTTATTGGAGTCGGGAGTTGATGGAGGTGAAGGACTCAGGTGGTGGAACAAGGTTTTGGATGTGGAGGAGGCCAAGAATCAGGTCTTGTTTTCGTTGCCGATGATTCTGACCAATGTTTTCTATTACTTGATCACTTTGGTTTCGGTTATGTTTGCTGGTCACCTTGGTGAGCTTGAGCTTGCTGGGGCAACACTGGCCAATTCATGGGCTGTTGTCACTGGATTTGCTTTCATGGTTGGGTTGAGTGGAGCACTTGAGACCCTGTGTGGGCAAGGATTTGGTGCAAAGTCATACAGAATGTTGGGAATTTATCTGCAAGCCTCTTCCATCATATCTTTCCTCTTCTCTATCATCATATCTGCAGTATGGTTCTACACCGAGCCCATACTTATCTTACTCCAGCAAGATCCTCAAATTTCGATGTCTGCTGCGGTTTATATTAAGTATCTGATTCCAGGATTATTTGCATATGGGTTCTTGAATAACATATTGAGATTTCTTCAGACACAATCTGTAGTCATGCCATTGGTTTTTCTCTCAGCGATCCCATTGGTTTTTCATATTGGCATTGCATACGGTTTGGTACATTGGACAGCTCTTGGTTTCAAGGGAGCTCCACTAGCAGCTTCAATTTCATTATGTATATCGTTTCTCATGCTGGCTACGTATGTTGTTTGTGCTAAGAAATTTGAGCACACATGGGAAGGATTTTCATTAGAATCATTCCACTATGTCCTGACTGACTTGAAACTTGCTCTCCCCTCTGCAGCGATGGTTTGCTTGGAGTACTGGGCTTTTGAGATTCTTGTGCTCTTGGCAGGATTAATGCCAAACTCGGAACAAACCACTTCACTAATTGCAATGTGTGTGAATACAGAAACAATTGCTTACATGCTTACATATGGCCTCAGTGCTGCAGCAAGCACAAGGGTGTCAAATGAATTGGGAGAAGGCAATCCAGACCGAGCTAAGAATGCGATGGCTGTGACTCTGAAGCTCTCTGTGCTTCTTGGTGTCTTAGTTGTTCTGGCGCTAGCACTTGGTCACAATATCTGGGCTGGCTTCTTCAGTGACAGCACTACAATAATTAAGCAATTTGCTTACATGACACCATTTCTTGCAATTTCAATAATGCTTGATTCGGTGCAAGGTGTCTTATCAGGTGTGGCTAGAGGTTGCGGTTGGCAGCACTTGGCTGTCTATGTGAACTTGGGCACATTCTATTTGATTGGTGTGACAATCGCATGTCTTCTTGCGTTTAAGCTGAAACTATATGCCAAGGGTTTGTGGATTGGTTTAATATGTGGTCTTTCCTGTCAAGCTGGGACACTTTTATTGCTTACATTGCGCACAAAATGGACTCAATTGGATTTAGCTCATCATACAGCATCTGTTTAA

Protein Analysis

481

Amino Acids

52.07

Weight (kDa)

5.98

Isoelectric Point (pI)

30.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 48 - 207 1.1e-32 MatE
MatE PF01554 269 - 430 4.2e-26 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000715)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23550 AT3G23560 AT3G23560
fragaria_vesca FvH4_1g15630 FvH4_1g15630 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19720 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_5g31740 FvH4_7g19991
malus_domestica MD03G1230300.v1.1 MD11G1250700.v1.1 MD11G1251300.v1.1 MD11G1251400.v1.1 MD11G1251500.v1.1 MD12G1088700.v1.1
prunus_persica Prupe.4G177700_v2.0.a1 Prupe.4G177700_v2.0.a1 Prupe.4G177900_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G206700_v2.0.a1
pyrus_communis pycom03g17780 pycom10g06980 pycom11g22170 pycom11g22270
rosa_chinensis RchiOBHm_Chr5g0033011 RchiOBHm_Chr5g0033061
rosa_laevigata RLG00000033443 RLG00000033445
rosa_multiflora Rmu_sc0000986.1_g000015
rosa_roxburghii Rroxscaffold_1G00046880 Rroxscaffold_1G00046890 Rroxscaffold_1G00046990 Rroxscaffold_1G00047000 Rroxscaffold_1G00047040
rosa_rugosa Rorug05G0135000 Rorug05G0135100 Rorug05G0135200 Rorug05G0135500 Rorug05G0135600 Rorug05G0135700 Rorug05G0135800
rosa_samantha Rh5AG227700 Rh5AG228200 Rh5BG229300 Rh5BG229400 Rh5CG256700 Rh5CG257200 Rh5DG233900 Rh5DG234100
rosa_wichuraiana Rw5G020860 Rw5G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1394
AccB7I CCANNNNNTGG 1 cut(s) 249
AciI CCGC 2 cut(s) 476, 1224
AclWI GGATC 2 cut(s) 446, 583
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 3 cut(s) 351, 459, 731
AcuI CTGAAG 3 cut(s) 530, 1058, 1096
AfaI GTAC 2 cut(s) 630, 833
AfiI CCNNNNNNNGG 2 cut(s) 249, 312
AgsI TTSAA 5 cut(s) 526, 652, 675, 793, 1173
AjnI CCWGG 1 cut(s) 499
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AleI CACNNNNGTG 2 cut(s) 210, 974
Alw21I GWGCWC 4 cut(s) 298, 661, 741, 858
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 2 cut(s) 446, 583
AlwNI CAGNNNCTG 1 cut(s) 1436
AoxI GGCC 3 cut(s) 114, 240, 949
ApeKI GCWGC 7 cut(s) 35, 473, 668, 812, 959, 962, 1231
ApoI RAATTY 3 cut(s) 351, 459, 731
AseI ATTAAT 1 cut(s) 869
AspLEI GCGC 2 cut(s) 1078, 1395
AsuHPI GGTGA 3 cut(s) 83, 197, 224
AsuNHI GCTAGC 1 cut(s) 1078
BaeGI GKGCMC 2 cut(s) 45, 1262
BalI TGGCCA 1 cut(s) 242
BanII GRGCYC 2 cut(s) 429, 661
BbsI GAAGAC 1 cut(s) 1286
Bbv12I GWGCWC 4 cut(s) 298, 661, 741, 858
BbvI GCAGC 7 cut(s) 47, 460, 680, 824, 946, 974, 1243
BccI CCATC 4 cut(s) 59, 380, 811, 1018
BciT130I CCWGG 1 cut(s) 501
BclI TGATCA 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 3 cut(s) 665, 1079, 1215
BfmI CTRYAG 4 cut(s) 405, 558, 810, 960
BfoI RGCGCY 1 cut(s) 1079
BisI GCNGC 7 cut(s) 36, 474, 669, 813, 960, 963, 1232
BlsI GCNGC 7 cut(s) 37, 475, 670, 814, 961, 964, 1233
BmcAI AGTACT 1 cut(s) 833
Bme1390I CCNGG 1 cut(s) 501
BmrFI CCNGG 1 cut(s) 501
BmrI ACTGGG 1 cut(s) 844
BmtI GCTAGC 1 cut(s) 1082
BmuI ACTGGG 1 cut(s) 844
BpiI GAAGAC 1 cut(s) 1286
BpmI CTGGAG 1 cut(s) 428
BpuEI CTTGAG 2 cut(s) 239, 320
BsaAI YACGTR 1 cut(s) 711
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 208, 1323
BsaXI ACNNNNNCTCC 2 cut(s) 786, 816
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 312
Bse1I ACTGG 3 cut(s) 243, 268, 839
Bse3DI GCAATG 3 cut(s) 612, 912, 1388
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 2 cut(s) 208, 1323
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 2 cut(s) 249, 312
BseMI GCAATG 3 cut(s) 612, 912, 1388
BseMII CTCAG 3 cut(s) 94, 597, 967
BseNI ACTGG 3 cut(s) 243, 268, 839
BseRI GAGGAG 1 cut(s) 125
BseSI GKGCMC 2 cut(s) 45, 1262
BseXI GCAGC 7 cut(s) 47, 460, 680, 824, 946, 974, 1243
BseYI CCCAGC 2 cut(s) 227, 1367
BshFI GGCC 3 cut(s) 116, 242, 951
BsiHKAI GWGCWC 4 cut(s) 298, 661, 741, 858
BslFI GGGAC 1 cut(s) 1384
BslI CCNNNNNNNGG 2 cut(s) 249, 312
BsmAI GTCTC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 1384
BsmI GAATGC 1 cut(s) 1024
BsnI GGCC 3 cut(s) 116, 242, 951
Bso31I GGTCTC 1 cut(s) 296
Bsp1286I GDGCHC 7 cut(s) 45, 298, 429, 661, 741, 858, 1262
Bsp143I GATC 3 cut(s) 174, 451, 588
BspACI CCGC 2 cut(s) 476, 1224
BspANI GGCC 3 cut(s) 116, 242, 951
BspCNI CTCAG 3 cut(s) 93, 596, 966
BspMAI CTGCAG 3 cut(s) 409, 814, 964
BspOI GCTAGC 1 cut(s) 1082
BspPI GGATC 2 cut(s) 446, 583
BspTNI GGTCTC 1 cut(s) 296
BsrDI GCAATG 3 cut(s) 612, 912, 1388
BsrI ACTGG 3 cut(s) 243, 268, 839
BssECI CCNNGG 2 cut(s) 208, 1323
BssMI GATC 3 cut(s) 174, 451, 588
BssT1I CCWWGG 2 cut(s) 208, 1323
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 1 cut(s) 623
Bst6I CTCTTC 2 cut(s) 373, 392
BstBAI YACGTR 1 cut(s) 711
BstC8I GCNNGC 6 cut(s) 225, 363, 705, 967, 1080, 1105
BstDEI CTNAG 6 cut(s) 80, 583, 726, 953, 1014, 1063
BstEII GGTNACC 1 cut(s) 203
BstF5I GGATG 1 cut(s) 109
BstH2I RGCGCY 1 cut(s) 1079
BstHHI GCGC 2 cut(s) 1078, 1395
BstKTI GATC 3 cut(s) 177, 454, 591
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 3 cut(s) 174, 451, 588
BstMWI GCNNNNNNNGC 5 cut(s) 239, 665, 1019, 1048, 1390
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 2 cut(s) 940, 1293
BstPI GGTNACC 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 499
BstSFI CTRYAG 4 cut(s) 405, 558, 810, 960
BstSLI GKGCMC 2 cut(s) 45, 1262
BstSNI TACGTA 1 cut(s) 711
BstV1I GCAGC 7 cut(s) 47, 460, 680, 824, 946, 974, 1243
BstV2I GAAGAC 1 cut(s) 1286
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BsuRI GGCC 3 cut(s) 116, 242, 951
BtgZI GCGATG 2 cut(s) 830, 1037
BtsCI GGATG 1 cut(s) 109
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 5 cut(s) 45, 236, 261, 961, 1120
Cac8I GCNNGC 6 cut(s) 225, 363, 705, 967, 1080, 1105
CaiI CAGNNNCTG 1 cut(s) 1436
CfoI GCGC 2 cut(s) 1078, 1395
Csp6I GTAC 2 cut(s) 629, 832
CviAII CATG 8 cut(s) 249, 277, 565, 700, 744, 937, 1150, 1290
CviQI GTAC 2 cut(s) 629, 832
DdeI CTNAG 6 cut(s) 80, 583, 726, 953, 1014, 1063
DpnI GATC 3 cut(s) 176, 453, 590
DpnII GATC 3 cut(s) 174, 451, 588
EaeI YGGCCR 1 cut(s) 240
Eam1104I CTCTTC 2 cut(s) 373, 392
EarI CTCTTC 2 cut(s) 373, 392
Ecl136II GAGCTC 1 cut(s) 659
Eco105I TACGTA 1 cut(s) 711
Eco130I CCWWGG 2 cut(s) 208, 1323
Eco24I GRGCYC 2 cut(s) 429, 661
Eco31I GGTCTC 1 cut(s) 296
Eco53kI GAGCTC 1 cut(s) 659
Eco57I CTGAAG 3 cut(s) 530, 1058, 1096
Eco91I GGTNACC 1 cut(s) 203
EcoICRI GAGCTC 1 cut(s) 659
EcoO65I GGTNACC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 499
EcoT14I CCWWGG 2 cut(s) 208, 1323
EcoT38I GRGCYC 2 cut(s) 429, 661
ErhI CCWWGG 2 cut(s) 208, 1323
FaeI CATG 8 cut(s) 252, 280, 568, 703, 747, 940, 1153, 1293
FaqI GGGAC 1 cut(s) 1384
FatI CATG 8 cut(s) 248, 276, 564, 699, 743, 936, 1149, 1289
FauNDI CATATG 2 cut(s) 514, 946
FbaI TGATCA 1 cut(s) 174
Fnu4HI GCNGC 7 cut(s) 36, 474, 669, 813, 960, 963, 1232
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 2 cut(s) 429, 661
Fsp4HI GCNGC 7 cut(s) 36, 474, 669, 813, 960, 963, 1232
FspBI CTAG 3 cut(s) 665, 1079, 1215
FspI TGCGCA 1 cut(s) 1394
GlaI GCGC 2 cut(s) 1077, 1394
GluI GCNGC 7 cut(s) 36, 474, 669, 813, 960, 963, 1232
GsaI CCCAGC 2 cut(s) 231, 1371
GsuI CTGGAG 1 cut(s) 428
HaeII RGCGCY 1 cut(s) 1079
HaeIII GGCC 3 cut(s) 116, 242, 951
HhaI GCGC 2 cut(s) 1078, 1395
Hin1II CATG 8 cut(s) 252, 280, 568, 703, 747, 940, 1153, 1293
Hin6I GCGC 2 cut(s) 1076, 1393
HinP1I GCGC 2 cut(s) 1076, 1393
HphI GGTGA 3 cut(s) 83, 197, 224
Hpy166II GTNNAC 1 cut(s) 1252
Hpy188I TCNGA 6 cut(s) 25, 153, 495, 549, 883, 1038
Hpy188III TCNNGA 4 cut(s) 57, 523, 781, 1004
Hpy8I GTNNAC 1 cut(s) 1252
HpyAV CCTTC 3 cut(s) 68, 743, 989
HpyCH4III ACNGT 1 cut(s) 623
HpyCH4IV ACGT 1 cut(s) 710
HpyF10VI GCNNNNNNNGC 5 cut(s) 239, 665, 1019, 1048, 1390
HpyF3I CTNAG 6 cut(s) 80, 583, 726, 953, 1014, 1063
HpySE526I ACGT 1 cut(s) 710
Hsp92II CATG 8 cut(s) 252, 280, 568, 703, 747, 940, 1153, 1293
HspAI GCGC 2 cut(s) 1076, 1393
Ksp22I TGATCA 1 cut(s) 174
Kzo9I GATC 3 cut(s) 174, 451, 588
LmnI GCTCC 3 cut(s) 293, 656, 664
Lsp1109I GCAGC 7 cut(s) 47, 460, 680, 824, 946, 974, 1243
MaeI CTAG 3 cut(s) 665, 1079, 1215
MaeII ACGT 1 cut(s) 710
MaeIII GTNAC 6 cut(s) 203, 259, 1030, 1088, 1115, 1279
MalI GATC 3 cut(s) 176, 453, 590
MboI GATC 3 cut(s) 174, 451, 588
MboII GAAGA 5 cut(s) 360, 379, 536, 1102, 1286
MfeI CAATTG 2 cut(s) 927, 1409
MflI RGATCY 1 cut(s) 451
MhlI GDGCHC 7 cut(s) 45, 298, 429, 661, 741, 858, 1262
MlsI TGGCCA 1 cut(s) 242
MluNI TGGCCA 1 cut(s) 242
MlyI GAGTC 4 cut(s) 62, 72, 1027, 1399
MnlI CCTC 9 cut(s) 62, 103, 106, 376, 395, 465, 817, 962, 1211
Mox20I TGGCCA 1 cut(s) 242
MscI TGGCCA 1 cut(s) 242
MseI TTAA 6 cut(s) 486, 869, 1134, 1305, 1343, 1441
MslI CAYNNNNRTG 2 cut(s) 210, 974
Msp20I TGGCCA 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 501
MunI CAATTG 2 cut(s) 927, 1409
Mva1269I GAATGC 1 cut(s) 1024
MvaI CCWGG 1 cut(s) 501
MwoI GCNNNNNNNGC 5 cut(s) 239, 665, 1019, 1048, 1390
NdeI CATATG 2 cut(s) 514, 946
NdeII GATC 3 cut(s) 174, 451, 588
NheI GCTAGC 1 cut(s) 1078
NlaIII CATG 8 cut(s) 252, 280, 568, 703, 747, 940, 1153, 1293
NmuCI GTSAC 6 cut(s) 203, 259, 1030, 1088, 1115, 1279
NsbI TGCGCA 1 cut(s) 1394
NspI RCATGY 2 cut(s) 940, 1293
OliI CACNNNNGTG 2 cut(s) 210, 974
PctI GAATGC 1 cut(s) 1024
PfeI GAWTC 6 cut(s) 121, 148, 496, 764, 847, 1184
PflMI CCANNNNNTGG 1 cut(s) 249
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 7 cut(s) 37, 475, 670, 814, 961, 964, 1233
PleI GAGTC 4 cut(s) 61, 72, 1027, 1399
PpsI GAGTC 4 cut(s) 61, 72, 1027, 1399
Ppu21I YACGTR 1 cut(s) 711
PshBI ATTAAT 1 cut(s) 869
Psp124BI GAGCTC 1 cut(s) 661
Psp6I CCWGG 1 cut(s) 499
PspEI GGTNACC 1 cut(s) 203
PspFI CCCAGC 2 cut(s) 227, 1367
PspGI CCWGG 1 cut(s) 499
PstI CTGCAG 3 cut(s) 409, 814, 964
PstNI CAGNNNCTG 1 cut(s) 1436
PsuI RGATCY 1 cut(s) 451
RsaI GTAC 2 cut(s) 630, 833
RsaNI GTAC 2 cut(s) 629, 832
RseI CAYNNNNRTG 2 cut(s) 210, 974
SacI GAGCTC 1 cut(s) 661
SaqAI TTAA 6 cut(s) 486, 869, 1134, 1305, 1343, 1441
SatI GCNGC 7 cut(s) 36, 474, 669, 813, 960, 963, 1232
Sau3AI GATC 3 cut(s) 174, 451, 588
ScaI AGTACT 1 cut(s) 833
SchI GAGTC 4 cut(s) 62, 72, 1027, 1399
ScrFI CCNGG 1 cut(s) 501
SduI GDGCHC 7 cut(s) 45, 298, 429, 661, 741, 858, 1262
SfcI CTRYAG 4 cut(s) 405, 558, 810, 960
SmiMI CAYNNNNRTG 2 cut(s) 210, 974
SmlI CTYRAG 2 cut(s) 218, 299
SmoI CTYRAG 2 cut(s) 218, 299
SnaBI TACGTA 1 cut(s) 711
SsiI CCGC 2 cut(s) 476, 1224
SspMI CTAG 3 cut(s) 665, 1079, 1215
SstI GAGCTC 1 cut(s) 661
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 2 cut(s) 208, 1323
TaaI ACNGT 1 cut(s) 623
TaiI ACGT 1 cut(s) 713
TaqI TCGA 1 cut(s) 464
TaqII GACCGA 1 cut(s) 1023
TatI WGTACW 1 cut(s) 831
TfiI GAWTC 6 cut(s) 121, 148, 496, 764, 847, 1184
Tru1I TTAA 6 cut(s) 486, 869, 1134, 1305, 1343, 1441
Tru9I TTAA 6 cut(s) 486, 869, 1134, 1305, 1343, 1441
TscAI CASTG 5 cut(s) 45, 243, 268, 961, 1120
TseFI GTSAC 6 cut(s) 203, 259, 1030, 1088, 1115, 1279
TseI GCWGC 7 cut(s) 35, 473, 668, 812, 959, 962, 1231
Tsp45I GTSAC 6 cut(s) 203, 259, 1030, 1088, 1115, 1279
TspDTI ATGAA 6 cut(s) 237, 265, 593, 669, 747, 999
TspRI CASTG 5 cut(s) 45, 243, 268, 961, 1120
Van91I CCANNNNNTGG 1 cut(s) 249
VspI ATTAAT 1 cut(s) 869
XapI RAATTY 3 cut(s) 351, 459, 731
XceI RCATGY 2 cut(s) 940, 1293
XspI CTAG 3 cut(s) 665, 1079, 1215
ZrmI AGTACT 1 cut(s) 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.