Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000715

Physical Location & Seq

Genomic Coordinates Forward (+)

12242635 .. 12243300

Gene Structure 666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0135600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGACTCAACTTAAGAGCATCGGCATATCGAATTTGAAAGAACAAGATGGGATTGACCTTTGGGTCTCAATCGAAAAGTTGAATATGCTACAATCTATGGTTTTAATCCCAAGTAATGAAGAGGAAATTCTTCCGGTGAAAGCACAATGTCCACCTCTTCCGCACCTTCGAAAGCTTGTATTGGTTGGCAGACTCCAAAACGTAATACCTTGGTTTTCTTCACTGCATAGTCTCACAGCTCTGATTCTGCATTGGTCTAGACTTGAAGAGGATTTACTACCTCAAATTGAAGCACTGCCCAATCTGACAAGGATTCAACTTTGTAGTACATATGTTGGGGAAGAGTTGTGTTTCCGCAGAGGCTTTGTAAAGCTGGAGGTGTTGGAGTTGTTGAATTTTGACCCTGTGAAAGTGATAACTATAGAAAAAGGGGTGATGCCAAATCTCCGGGACTTAACTGTTGCCCGCTGCATGGAGTTGAAGACAGTGCCACTGGGCCTTGAATATCTTTCTAATCTACAAACTTTGGACCTGAAAGATGTTCCCATGAAAGTTATACAGCCCATTCGGAAAGGAGGTGCAGATCGCTTTAAGGTACAACACATCCCTAAGATCAGACATATTTTTCAACGATCATCCGAGCGGGTCCATGAAGACTTGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009636 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043207 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

221

Amino Acids

25.34

Weight (kDa)

7.72

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	4 - 177	9.1e-13	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23550 AT3G23560 AT3G23560
fragaria_vesca	FvH4_1g15630 FvH4_1g15630 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19720 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_5g31740 FvH4_7g19991
malus_domestica	MD03G1230300.v1.1 MD11G1250700.v1.1 MD11G1251300.v1.1 MD11G1251400.v1.1 MD11G1251500.v1.1 MD12G1088700.v1.1
prunus_persica	Prupe.4G177700_v2.0.a1 Prupe.4G177700_v2.0.a1 Prupe.4G177900_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G206700_v2.0.a1
pyrus_communis	pycom03g17780 pycom10g06980 pycom11g22170 pycom11g22270
rosa_chinensis	RchiOBHm_Chr5g0033011 RchiOBHm_Chr5g0033061
rosa_laevigata	RLG00000033443 RLG00000033445
rosa_multiflora	Rmu_sc0000986.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046880 Rroxscaffold_1G00046890 Rroxscaffold_1G00046990 Rroxscaffold_1G00047000 Rroxscaffold_1G00047040
rosa_rugosa	Rorug05G0135000 Rorug05G0135100 Rorug05G0135200 Rorug05G0135500 Rorug05G0135600 Rorug05G0135700 Rorug05G0135800
rosa_samantha	Rh5AG227700 Rh5AG228200 Rh5BG229300 Rh5BG229400 Rh5CG256700 Rh5CG257200 Rh5DG233900 Rh5DG234100
rosa_wichuraiana	Rw5G020860 Rw5G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
AccBSI	CCGCTC	1 cut(s)	643
AciI	CCGC	4 cut(s)	161, 355, 466, 643
AcsI	RAATTY	3 cut(s)	31, 126, 394
AfaI	GTAC	2 cut(s)	328, 597
AfiI	CCNNNNNNNGG	1 cut(s)	472
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	9 cut(s)	37, 82, 266, 290, 317, 394, 481, 503, 629
AluBI	AGCT	3 cut(s)	175, 239, 373
AluI	AGCT	3 cut(s)	175, 239, 373
Alw26I	GTCTC	2 cut(s)	70, 236
AoxI	GGCC	1 cut(s)	496
ApeKI	GCWGC	1 cut(s)	468
ApoI	RAATTY	3 cut(s)	31, 126, 394
Asp700I	GAANNNNTTC	1 cut(s)	129
AspS9I	GGNCC	3 cut(s)	496, 529, 646
AsuC2I	CCSGG	1 cut(s)	449
AsuHPI	GGTGA	2 cut(s)	148, 445
AsuII	TTCGAA	1 cut(s)	169
AvaII	GGWCC	2 cut(s)	529, 646
BarI	GAAGNNNNNNTAC	2 cut(s)	258, 290
BbsI	GAAGAC	2 cut(s)	488, 660
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	449
BcoDI	GTCTC	2 cut(s)	70, 236
BfaI	CTAG	2 cut(s)	258, 664
BfmI	CTRYAG	1 cut(s)	420
BfrI	CTTAAG	1 cut(s)	11
BisI	GCNGC	1 cut(s)	469
BlsI	GCNGC	1 cut(s)	470
Bme1390I	CCNGG	1 cut(s)	449
Bme18I	GGWCC	2 cut(s)	529, 646
BmgT120I	GGNCC	3 cut(s)	496, 529, 646
BmiI	GGNNCC	1 cut(s)	647
BmrFI	CCNGG	1 cut(s)	449
BmrI	ACTGGG	1 cut(s)	503
BmsI	GCATC	2 cut(s)	27, 426
BmuI	ACTGGG	1 cut(s)	503
BpiI	GAAGAC	2 cut(s)	488, 660
BpmI	CTGGAG	1 cut(s)	395
Bpu14I	TTCGAA	1 cut(s)	169
BpuMI	CCSGG	1 cut(s)	449
BsaI	GGTCTC	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	209
BsaWI	WCCGGW	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	472
Bse1I	ACTGG	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	2 cut(s)	603, 635
BseLI	CCNNNNNNNGG	1 cut(s)	472
BseNI	ACTGG	1 cut(s)	498
BseXI	GCAGC	1 cut(s)	455
BsgI	GTGCAG	1 cut(s)	600
BshFI	GGCC	1 cut(s)	498
BsiSI	CCGG	2 cut(s)	134, 448
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	1 cut(s)	472
BsmAI	GTCTC	2 cut(s)	70, 236
BsmFI	GGGAC	1 cut(s)	464
BsnI	GGCC	1 cut(s)	498
Bso31I	GGTCTC	1 cut(s)	70
Bsp119I	TTCGAA	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	583, 612, 632
BspACI	CCGC	4 cut(s)	161, 355, 466, 643
BspANI	GGCC	1 cut(s)	498
BspLI	GGNNCC	1 cut(s)	647
BspT104I	TTCGAA	1 cut(s)	169
BspTI	CTTAAG	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	70
BsrBI	CCGCTC	1 cut(s)	643
BsrI	ACTGG	1 cut(s)	498
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	3 cut(s)	583, 612, 632
BssT1I	CCWWGG	1 cut(s)	209
Bst4CI	ACNGT	2 cut(s)	460, 487
Bst6I	CTCTTC	4 cut(s)	114, 162, 261, 336
BstAFI	CTTAAG	1 cut(s)	11
BstBI	TTCGAA	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	1 cut(s)	609
BstF5I	GGATG	2 cut(s)	603, 635
BstKTI	GATC	3 cut(s)	586, 615, 635
BstMAI	GTCTC	2 cut(s)	70, 236
BstMBI	GATC	3 cut(s)	583, 612, 632
BstSCI	CCNGG	1 cut(s)	447
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	1 cut(s)	455
BstV2I	GAAGAC	2 cut(s)	488, 660
BsuRI	GGCC	1 cut(s)	498
BtsCI	GGATG	2 cut(s)	603, 635
BtsI	GCAGTG	2 cut(s)	221, 293
BtsIMutI	CAGTG	4 cut(s)	221, 293, 491, 492
Cac8I	GCNNGC	1 cut(s)	466
Cfr13I	GGNCC	3 cut(s)	496, 529, 646
Csp6I	GTAC	2 cut(s)	327, 596
CviAII	CATG	3 cut(s)	472, 547, 650
CviJI	RGCY	6 cut(s)	175, 239, 363, 373, 498, 562
CviKI_1	RGCY	6 cut(s)	175, 239, 363, 373, 498, 562
CviQI	GTAC	2 cut(s)	327, 596
DdeI	CTNAG	1 cut(s)	609
DpnI	GATC	3 cut(s)	585, 614, 634
DpnII	GATC	3 cut(s)	583, 612, 632
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
Eam1104I	CTCTTC	4 cut(s)	114, 162, 261, 336
EarI	CTCTTC	4 cut(s)	114, 162, 261, 336
Eco130I	CCWWGG	1 cut(s)	209
Eco31I	GGTCTC	1 cut(s)	70
Eco47I	GGWCC	2 cut(s)	529, 646
EcoT14I	CCWWGG	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	3 cut(s)	475, 550, 653
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	3 cut(s)	471, 546, 649
FauI	CCCGC	2 cut(s)	473, 636
FauNDI	CATATG	1 cut(s)	331
Fnu4HI	GCNGC	1 cut(s)	469
FokI	GGATG	2 cut(s)	590, 622
Fsp4HI	GCNGC	1 cut(s)	469
FspBI	CTAG	2 cut(s)	258, 664
GluI	GCNGC	1 cut(s)	469
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	1 cut(s)	498
HapII	CCGG	2 cut(s)	134, 448
Hin1II	CATG	3 cut(s)	475, 550, 653
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	4 cut(s)	4, 192, 244, 313
HpaII	CCGG	2 cut(s)	134, 448
HphI	GGTGA	2 cut(s)	148, 445
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	5 cut(s)	243, 306, 570, 617, 640
Hpy188III	TCNNGA	1 cut(s)	258
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	2 cut(s)	460, 487
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	4 cut(s)	226, 250, 471, 581
HpyF3I	CTNAG	1 cut(s)	609
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	475, 550, 653
Kzo9I	GATC	3 cut(s)	583, 612, 632
LpnPI	CCDG	6 cut(s)	147, 359, 417, 461, 479, 545
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	2 cut(s)	27, 426
MaeI	CTAG	2 cut(s)	258, 664
MaeII	ACGT	1 cut(s)	201
MalI	GATC	3 cut(s)	585, 614, 634
MbiI	CCGCTC	1 cut(s)	643
MboI	GATC	3 cut(s)	583, 612, 632
MboII	GAAGA	8 cut(s)	122, 131, 149, 210, 278, 353, 493, 665
MluCI	AATT	4 cut(s)	31, 126, 285, 394
MlyI	GAGTC	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	7 cut(s)	115, 165, 262, 291, 353, 370, 569
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	4 cut(s)	12, 104, 455, 591
MspA1I	CMGCKG	1 cut(s)	468
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	2 cut(s)	134, 448
MspR9I	CCNGG	1 cut(s)	449
NciI	CCSGG	1 cut(s)	449
NdeI	CATATG	1 cut(s)	331
NdeII	GATC	3 cut(s)	583, 612, 632
NlaIII	CATG	3 cut(s)	475, 550, 653
NlaIV	GGNNCC	1 cut(s)	647
NspV	TTCGAA	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	244, 313
PfoI	TCCNGGA	1 cut(s)	447
PkrI	GCNGC	1 cut(s)	470
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	647
PspPI	GGNCC	3 cut(s)	496, 529, 646
RsaI	GTAC	2 cut(s)	328, 597
RsaNI	GTAC	2 cut(s)	327, 596
SaqAI	TTAA	4 cut(s)	12, 104, 455, 591
SatI	GCNGC	1 cut(s)	469
Sau3AI	GATC	3 cut(s)	583, 612, 632
Sau96I	GGNCC	3 cut(s)	496, 529, 646
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	1 cut(s)	449
SfaNI	GCATC	2 cut(s)	27, 426
SfcI	CTRYAG	1 cut(s)	420
SfuI	TTCGAA	1 cut(s)	169
SinI	GGWCC	2 cut(s)	529, 646
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	4 cut(s)	31, 126, 285, 394
SsiI	CCGC	4 cut(s)	161, 355, 466, 643
SspMI	CTAG	2 cut(s)	258, 664
StyD4I	CCNGG	1 cut(s)	447
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	2 cut(s)	460, 487
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	3 cut(s)	29, 72, 169
TasI	AATT	4 cut(s)	31, 126, 285, 394
TatI	WGTACW	1 cut(s)	326
TfiI	GAWTC	2 cut(s)	244, 313
Tru1I	TTAA	4 cut(s)	12, 104, 455, 591
Tru9I	TTAA	4 cut(s)	12, 104, 455, 591
TscAI	CASTG	4 cut(s)	228, 300, 492, 498
TseI	GCWGC	1 cut(s)	468
TspDTI	ATGAA	3 cut(s)	132, 563, 666
TspRI	CASTG	4 cut(s)	228, 300, 492, 498
Vha464I	CTTAAG	1 cut(s)	11
VpaK11BI	GGWCC	2 cut(s)	529, 646
XapI	RAATTY	3 cut(s)	31, 126, 394
XbaI	TCTAGA	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	2 cut(s)	258, 664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.