Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000715

Physical Location & Seq

Genomic Coordinates Reverse (-)

36353083 .. 36354959

Gene Structure 1877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1251400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAAATTTCTTATCCCGGGATTGTTTGCATATGGCTTCCTGCACAACATTTTGAGATTTCTTCAGACGCAATCTGTTGTCATGCCACTGGTCTACTTCTCGGTGATCCCAGTGGTTCTTCATGTTGGAATTGCATATAGTCTGGTACATTGGACAGGTCTTGGTTACGTGGGAGCTCCGCTGGCAGCTTCGATTTCAATATGGATATCGATGCTAATGTTGGCCTCGTACGTTTTGTGCGCAAAGAAGTTTGAGGTTACGTGGGAAGGGTTTTCATTAGAATCATTTCATTATGTCCTCACCAACTTGAAACTTGCTCTACCCTCTGCAGCAATGGTATGTTTAGAGTATTGGGCCTTCGAGATTCTGGTGTTCATGGCAGGAGTGATGCCAAACGCCGAACAAAACACTTCCCTAATTGCAATCTGTGTGAATACAGAAGCAATTGCATACATGATTACATATGGCCTCAGTGCTGCTGCAAGCACAAGGGTGTCAAATGAATTGGGAGCAGGCAATCCTGAGAAAGCCAAGAATGCAATGGCTGTGACTCTTAAGCTTTCTATACTTCTCGCTCTCGTTGTTGATCTGGCTCTGGCATTTGGTCACAATTTATGGGCCGGCTCCTTCAGCGACAGCAGTGTAATAATAAAACTATTTGCTTCCATGACACCATTGCTTGCAGTTTCAATAATTGCTGATTCTGTGCAAGGCGTCTTATCAGGTGTGGCCAGAGGATGTGCGTGGCAGCACTTGGCTGTATATGTAAACTTGGGAACATTCTATTTGGTTGGCATGACAATTGCAAGTGTTCTTGCATTTAAGTTGAAACTATATGCTAAGGGGTTGTGGATTGGTTTAATCTGCGGTCTTTCATGCCAAGCCGCCCTACTTTTGGTGGTTACGCTACGCACAAAATGGACTCAACTGGATTTACCTCGTAATGCAGATGCAGTTTTGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009636 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043207 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

322

Amino Acids

34.65

Weight (kDa)

8.47

Isoelectric Point (pI)

23.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	108 - 268	4.9e-25	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23550 AT3G23560 AT3G23560
fragaria_vesca	FvH4_1g15630 FvH4_1g15630 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19720 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_5g31740 FvH4_7g19991
malus_domestica	MD03G1230300.v1.1 MD11G1250700.v1.1 MD11G1251300.v1.1 MD11G1251400.v1.1 MD11G1251500.v1.1 MD12G1088700.v1.1
prunus_persica	Prupe.4G177700_v2.0.a1 Prupe.4G177700_v2.0.a1 Prupe.4G177900_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G206700_v2.0.a1
pyrus_communis	pycom03g17780 pycom10g06980 pycom11g22170 pycom11g22270
rosa_chinensis	RchiOBHm_Chr5g0033011 RchiOBHm_Chr5g0033061
rosa_laevigata	RLG00000033443 RLG00000033445
rosa_multiflora	Rmu_sc0000986.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046880 Rroxscaffold_1G00046890 Rroxscaffold_1G00046990 Rroxscaffold_1G00047000 Rroxscaffold_1G00047040
rosa_rugosa	Rorug05G0135000 Rorug05G0135100 Rorug05G0135200 Rorug05G0135500 Rorug05G0135600 Rorug05G0135700 Rorug05G0135800
rosa_samantha	Rh5AG227700 Rh5AG228200 Rh5BG229300 Rh5BG229400 Rh5CG256700 Rh5CG257200 Rh5DG233900 Rh5DG234100
rosa_wichuraiana	Rw5G020860 Rw5G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	3 cut(s)	179, 867, 885
AclWI	GGATC	1 cut(s)	100
AcoI	YGGCCR	1 cut(s)	729
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	2 cut(s)	47, 613
AcyI	GRCGYC	1 cut(s)	714
AfaI	GTAC	2 cut(s)	147, 230
AfiI	CCNNNNNNNGG	1 cut(s)	895
AflII	CTTAAG	1 cut(s)	554
AgsI	TTSAA	4 cut(s)	198, 310, 690, 829
AleI	CACNNNNGTG	1 cut(s)	491
AluBI	AGCT	3 cut(s)	176, 188, 559
AluI	AGCT	3 cut(s)	176, 188, 559
Alw21I	GWGCWC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	100
Ama87I	CYCGRG	1 cut(s)	16
AoxI	GGCC	6 cut(s)	222, 354, 466, 618, 729, 960
ApeKI	GCWGC	5 cut(s)	185, 329, 476, 479, 748
ApoI	RAATTY	1 cut(s)	5
Asp700I	GAANNNNTTC	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	2 cut(s)	354, 618
AsuC2I	CCSGG	2 cut(s)	17, 18
AsuHPI	GGTGA	2 cut(s)	115, 292
AvaI	CYCGRG	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	731
BanII	GRGCYC	1 cut(s)	178
BarI	GAAGNNNNNNTAC	2 cut(s)	341, 373
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	5 cut(s)	197, 341, 463, 466, 760
BcnI	CCSGG	2 cut(s)	17, 18
BfmI	CTRYAG	1 cut(s)	327
BfrI	CTTAAG	1 cut(s)	554
BisI	GCNGC	6 cut(s)	186, 330, 477, 480, 749, 885
BlsI	GCNGC	6 cut(s)	187, 331, 478, 481, 750, 886
Bme1390I	CCNGG	2 cut(s)	17, 18
BmeT110I	CYCGRG	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	354, 618
BmiI	GGNNCC	1 cut(s)	625
BmrFI	CCNGG	2 cut(s)	17, 18
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	3 cut(s)	201, 378, 940
BmuI	ACTGGG	1 cut(s)	104
Bpu10I	CCTNAGC	1 cut(s)	840
BpuMI	CCSGG	2 cut(s)	17, 18
Bsa29I	ATCGAT	1 cut(s)	209
BsaAI	YACGTR	2 cut(s)	169, 261
BsaHI	GRCGYC	1 cut(s)	714
BsaJI	CCNNGG	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	1 cut(s)	895
Bse118I	RCCGGY	1 cut(s)	620
Bse1I	ACTGG	3 cut(s)	93, 110, 933
Bse3DI	GCAATG	3 cut(s)	339, 546, 674
BseCI	ATCGAT	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	743
BseLI	CCNNNNNNNGG	1 cut(s)	895
BseMI	GCAATG	3 cut(s)	339, 546, 674
BseMII	CTCAG	2 cut(s)	484, 513
BseNI	ACTGG	3 cut(s)	93, 110, 933
BseXI	GCAGC	5 cut(s)	197, 341, 463, 466, 760
BsgI	GTGCAG	1 cut(s)	26
BshFI	GGCC	6 cut(s)	224, 356, 468, 620, 731, 962
BshVI	ATCGAT	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	178
BsiHKCI	CYCGRG	1 cut(s)	16
BsiSI	CCGG	2 cut(s)	17, 621
BsiWI	CGTACG	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	895
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	6 cut(s)	224, 356, 468, 620, 731, 962
BsoBI	CYCGRG	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	105, 586
BspACI	CCGC	3 cut(s)	179, 867, 885
BspANI	GGCC	6 cut(s)	224, 356, 468, 620, 731, 962
BspCNI	CTCAG	2 cut(s)	483, 514
BspDI	ATCGAT	1 cut(s)	209
BspLI	GGNNCC	1 cut(s)	625
BspMAI	CTGCAG	1 cut(s)	331
BspPI	GGATC	1 cut(s)	100
BspTI	CTTAAG	1 cut(s)	554
BsrDI	GCAATG	3 cut(s)	339, 546, 674
BsrFI	RCCGGY	1 cut(s)	620
BsrI	ACTGG	3 cut(s)	93, 110, 933
BssAI	RCCGGY	1 cut(s)	620
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	2 cut(s)	105, 586
BssNI	GRCGYC	1 cut(s)	714
BstACI	GRCGYC	1 cut(s)	714
BstAFI	CTTAAG	1 cut(s)	554
BstBAI	YACGTR	2 cut(s)	169, 261
BstC8I	GCNNGC	5 cut(s)	183, 484, 514, 622, 681
BstDEI	CTNAG	3 cut(s)	470, 522, 840
BstF5I	GGATG	1 cut(s)	743
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	2 cut(s)	108, 589
BstMBI	GATC	2 cut(s)	105, 586
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 536, 630, 959
BstSCI	CCNGG	2 cut(s)	15, 16
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	5 cut(s)	197, 341, 463, 466, 760
Bsu15I	ATCGAT	1 cut(s)	209
BsuRI	GGCC	6 cut(s)	224, 356, 468, 620, 731, 962
BsuTUI	ATCGAT	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	743
BtsI	GCAGTG	1 cut(s)	646
BtsIMutI	CAGTG	4 cut(s)	86, 117, 478, 646
Cac8I	GCNNGC	5 cut(s)	183, 484, 514, 622, 681
CfoI	GCGC	1 cut(s)	242
Cfr10I	RCCGGY	1 cut(s)	620
Cfr13I	GGNCC	2 cut(s)	354, 618
Cfr9I	CCCGGG	1 cut(s)	16
ClaI	ATCGAT	1 cut(s)	209
CseI	GACGC	2 cut(s)	76, 703
Csp6I	GTAC	2 cut(s)	146, 229
CviAII	CATG	7 cut(s)	82, 122, 376, 454, 667, 796, 876
CviQI	GTAC	2 cut(s)	146, 229
DdeI	CTNAG	3 cut(s)	470, 522, 840
DpnI	GATC	2 cut(s)	107, 588
DpnII	GATC	2 cut(s)	105, 586
EaeI	YGGCCR	1 cut(s)	729
Ecl136II	GAGCTC	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	176
Eco57I	CTGAAG	2 cut(s)	47, 613
Eco88I	CYCGRG	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	176
EcoRV	GATATC	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	7 cut(s)	85, 125, 379, 457, 670, 799, 879
FatI	CATG	7 cut(s)	81, 121, 375, 453, 666, 795, 875
FauNDI	CATATG	2 cut(s)	31, 463
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	6 cut(s)	186, 330, 477, 480, 749, 885
FokI	GGATG	1 cut(s)	750
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	6 cut(s)	186, 330, 477, 480, 749, 885
FspI	TGCGCA	1 cut(s)	241
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	6 cut(s)	186, 330, 477, 480, 749, 885
HaeIII	GGCC	6 cut(s)	224, 356, 468, 620, 731, 962
HapII	CCGG	2 cut(s)	17, 621
HgaI	GACGC	2 cut(s)	76, 703
HhaI	GCGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	714
Hin1II	CATG	7 cut(s)	85, 125, 379, 457, 670, 799, 879
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	5 cut(s)	281, 364, 550, 701, 922
HpaII	CCGG	2 cut(s)	17, 621
HphI	GGTGA	2 cut(s)	115, 292
Hpy166II	GTNNAC	2 cut(s)	94, 769
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	2 cut(s)	361, 521
Hpy8I	GTNNAC	2 cut(s)	94, 769
HpyAV	CCTTC	3 cut(s)	260, 367, 637
HpyCH4IV	ACGT	3 cut(s)	168, 231, 260
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 536, 630, 959
HpyF3I	CTNAG	3 cut(s)	470, 522, 840
HpySE526I	ACGT	3 cut(s)	168, 231, 260
Hsp92I	GRCGYC	1 cut(s)	714
Hsp92II	CATG	7 cut(s)	85, 125, 379, 457, 670, 799, 879
HspAI	GCGC	1 cut(s)	240
KroI	GCCGGC	1 cut(s)	620
KroNI	GCCGGC	1 cut(s)	622
Kzo9I	GATC	2 cut(s)	105, 586
LmnI	GCTCC	4 cut(s)	173, 181, 509, 629
Lsp1109I	GCAGC	5 cut(s)	197, 341, 463, 466, 760
LweI	GCATC	3 cut(s)	201, 378, 940
MaeII	ACGT	3 cut(s)	168, 231, 260
MaeIII	GTNAC	5 cut(s)	164, 256, 547, 605, 901
MalI	GATC	2 cut(s)	107, 588
MboI	GATC	2 cut(s)	105, 586
MboII	GAAGA	2 cut(s)	53, 110
MfeI	CAATTG	2 cut(s)	444, 801
MhlI	GDGCHC	1 cut(s)	178
MlsI	TGGCCA	1 cut(s)	731
MluCI	AATT	8 cut(s)	5, 129, 417, 444, 503, 610, 693, 801
MluNI	TGGCCA	1 cut(s)	731
MlyI	GAGTC	2 cut(s)	544, 916
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	7 cut(s)	235, 247, 308, 334, 479, 728, 948
Mox20I	TGGCCA	1 cut(s)	731
MroNI	GCCGGC	1 cut(s)	620
MroXI	GAANNNNTTC	1 cut(s)	285
MscI	TGGCCA	1 cut(s)	731
MseI	TTAA	3 cut(s)	555, 822, 860
MslI	CAYNNNNRTG	1 cut(s)	491
Msp20I	TGGCCA	1 cut(s)	731
MspA1I	CMGCKG	1 cut(s)	181
MspCI	CTTAAG	1 cut(s)	554
MspI	CCGG	2 cut(s)	17, 621
MspR9I	CCNGG	2 cut(s)	17, 18
MunI	CAATTG	2 cut(s)	444, 801
Mva1269I	GAATGC	1 cut(s)	541
MwoI	GCNNNNNNNGC	4 cut(s)	182, 536, 630, 959
NaeI	GCCGGC	1 cut(s)	622
NciI	CCSGG	2 cut(s)	17, 18
NdeI	CATATG	2 cut(s)	31, 463
NdeII	GATC	2 cut(s)	105, 586
NgoMIV	GCCGGC	1 cut(s)	620
NlaIII	CATG	7 cut(s)	85, 125, 379, 457, 670, 799, 879
NlaIV	GGNNCC	1 cut(s)	625
NmuCI	GTSAC	2 cut(s)	547, 605
NsbI	TGCGCA	1 cut(s)	241
OliI	CACNNNNGTG	1 cut(s)	491
PctI	GAATGC	1 cut(s)	541
PdiI	GCCGGC	1 cut(s)	622
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	3 cut(s)	281, 364, 701
Pfl23II	CGTACG	1 cut(s)	228
PkrI	GCNGC	6 cut(s)	187, 331, 478, 481, 750, 886
PleI	GAGTC	2 cut(s)	544, 916
PpsI	GAGTC	2 cut(s)	544, 916
Ppu21I	YACGTR	2 cut(s)	169, 261
Psp124BI	GAGCTC	1 cut(s)	178
PspLI	CGTACG	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	625
PspPI	GGNCC	2 cut(s)	354, 618
PstI	CTGCAG	1 cut(s)	331
RsaI	GTAC	2 cut(s)	147, 230
RsaNI	GTAC	2 cut(s)	146, 229
RseI	CAYNNNNRTG	1 cut(s)	491
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	3 cut(s)	555, 822, 860
SatI	GCNGC	6 cut(s)	186, 330, 477, 480, 749, 885
Sau3AI	GATC	2 cut(s)	105, 586
Sau96I	GGNCC	2 cut(s)	354, 618
SchI	GAGTC	2 cut(s)	544, 916
ScrFI	CCNGG	2 cut(s)	17, 18
SduI	GDGCHC	1 cut(s)	178
SfaNI	GCATC	3 cut(s)	201, 378, 940
SfcI	CTRYAG	1 cut(s)	327
SmaI	CCCGGG	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	8 cut(s)	5, 129, 417, 444, 503, 610, 693, 801
SsiI	CCGC	3 cut(s)	179, 867, 885
SstI	GAGCTC	1 cut(s)	178
StyD4I	CCNGG	2 cut(s)	15, 16
TaiI	ACGT	3 cut(s)	171, 234, 263
TaqI	TCGA	3 cut(s)	191, 209, 360
TasI	AATT	8 cut(s)	5, 129, 417, 444, 503, 610, 693, 801
TauI	GCSGC	1 cut(s)	887
TfiI	GAWTC	3 cut(s)	281, 364, 701
Tru1I	TTAA	3 cut(s)	555, 822, 860
Tru9I	TTAA	3 cut(s)	555, 822, 860
TscAI	CASTG	4 cut(s)	93, 117, 478, 646
TseFI	GTSAC	2 cut(s)	547, 605
TseI	GCWGC	5 cut(s)	185, 329, 476, 479, 748
Tsp45I	GTSAC	2 cut(s)	547, 605
TspDTI	ATGAA	7 cut(s)	17, 110, 264, 278, 364, 516, 864
TspMI	CCCGGG	1 cut(s)	16
TspRI	CASTG	4 cut(s)	93, 117, 478, 646
Vha464I	CTTAAG	1 cut(s)	554
XapI	RAATTY	1 cut(s)	5
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XmaI	CCCGGG	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	93
XmnI	GAANNNNTTC	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.