Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000715

Physical Location & Seq

Genomic Coordinates Forward (+)

12169350 .. 12171527

Gene Structure 2178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0135100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGATTCAGAAGAAAAAAATCATGCCACTGAAGATGACTTGCCATCTGACGAGAAGAAGAGAAGAGGTCCAACTCTCATGTCCGATATTATTCATGGTAGGAGTAAGGGGGCTCGAATGGAACTGACATATAACAAAAAGGGGCAACCAATTGGTCTTGGAGGGAAGAGGCTAGCTACTTTTATTGGGGTAATGGCTCGAACTACTATCCCAATCACATATGAGACTTGGCCAGCAGTGAAGAATTCACTTAAAGAAATGATATGGAGCATGGTTCAGGAAATTCATGAGGACCACTCAAGGAGACTAGCTTTGCATGAGTATGATCATCGAATGTCTAGGAAAGGCTATGCTAATTTGGAAGAGAAACTAAAAATGGAGTTAGGGACTGAAGACGATATTGATAGAGCCATCTTCTGGAAGAAAGGGCGTGTCTATAAAGATGGTAACTATTTGAGTGAGACAACCAAACAACGTGTTCAGAAAATTGATGCTTTAACGAAAGATGTGAGGGAGGGAATTGTGTCCGCTGTTAGTAGAAACGACATTTTGACTCAAGCTTTGGAGACACCTGAGCAATCGGGCAGTGTAAGAGGTGCTGGACAATTTGTTACACATAAGGTGTACTTTAATACATCTAGATATAAGCCTGCAACCAAGACACAATTGTTGGAACAGCAGTTGGAATTGATAAAAAACCAGATCAACATGTTTACTTTATTATTGGATCCCGAGAAGTTGGATCCAGTTAAACTAAACATGATGCGAGACATGTTCAGATCTAATAATGGATCTGAAAAAGCTAGTTGCTCCGTCGACAAGGAGAAAAATAAGTCTTCTAAGGAGGAGGTATCTAAGGTGGCATCGGAGAAAGAAAATGAGAAAAAAGCTACTGCCAAAAAGGTTCAAAAAATGGATGATACTCCACCTCCAATTGACAGCAGTAGAGAGAGCAAGAAGGCAAAACAATTGTATAAAGGGGGACTGATGATGAGGCAGAGAGGAGCATTGGAAGATGACAATGTGATAACTTCAACAGAGAAAGCATATATTCCTATTGAGACAACAAATGTTGTAAAAAAGGGGAAAAAATGCAAGCTAGTAGTAGACACCAAAGATAACATTGTTGCAATGGGAACTGTAATAATGTTGGATGGGCCGATACATGGAGTGCCACTAGGAGCAGAAAATATACGTATCTCAGTTGATGTGCCCATCAAGGAAGATGCTAAACTCCCCATCCCAAATGTGTCAGCTGAAATTTTTACAGTAAAGCAAGCTACCGGTACTCATGCCGCTTGGCCTCGACATCATGTTTTAATGTCACATGAAGAGGTATATAGTAAGTTGATTATAATTCCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009636 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043207 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

455

Amino Acids

51.36

Weight (kDa)

9.16

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	103 - 206	1.4e-06	Plant transposase (Ptta/En/Spm family)
DUF8039	PF26133	359 - 441	7.3e-13	Domain of unknown function (DUF8039)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23550 AT3G23560 AT3G23560
fragaria_vesca	FvH4_1g15630 FvH4_1g15630 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19700 FvH4_3g19720 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_3g20060 FvH4_5g31740 FvH4_7g19991
malus_domestica	MD03G1230300.v1.1 MD11G1250700.v1.1 MD11G1251300.v1.1 MD11G1251400.v1.1 MD11G1251500.v1.1 MD12G1088700.v1.1
prunus_persica	Prupe.4G177700_v2.0.a1 Prupe.4G177700_v2.0.a1 Prupe.4G177900_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178700_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G178900_v2.0.a1 Prupe.4G206700_v2.0.a1
pyrus_communis	pycom03g17780 pycom10g06980 pycom11g22170 pycom11g22270
rosa_chinensis	RchiOBHm_Chr5g0033011 RchiOBHm_Chr5g0033061
rosa_laevigata	RLG00000033443 RLG00000033445
rosa_multiflora	Rmu_sc0000986.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046880 Rroxscaffold_1G00046890 Rroxscaffold_1G00046990 Rroxscaffold_1G00047000 Rroxscaffold_1G00047040
rosa_rugosa	Rorug05G0135000 Rorug05G0135100 Rorug05G0135200 Rorug05G0135500 Rorug05G0135600 Rorug05G0135700 Rorug05G0135800
rosa_samantha	Rh5AG227700 Rh5AG228200 Rh5BG229300 Rh5BG229400 Rh5CG256700 Rh5CG257200 Rh5DG233900 Rh5DG234100
rosa_wichuraiana	Rw5G020860 Rw5G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1355
AccB7I	CCANNNNNTGG	1 cut(s)	417
AccI	GTMKAC	2 cut(s)	816, 1107
AciI	CCGC	2 cut(s)	528, 1296
AclWI	GGATC	5 cut(s)	722, 735, 737, 750, 799
AcoI	YGGCCR	1 cut(s)	230
AcsI	RAATTY	3 cut(s)	244, 282, 1260
AcuI	CTGAAG	2 cut(s)	51, 411
AfaI	GTAC	2 cut(s)	626, 1288
AfiI	CCNNNNNNNGG	2 cut(s)	417, 1166
AflIII	ACRYGT	3 cut(s)	475, 708, 771
AgeI	ACCGGT	1 cut(s)	1283
AgsI	TTSAA	2 cut(s)	908, 1035
AluBI	AGCT	8 cut(s)	176, 311, 560, 803, 890, 1099, 1256, 1280
AluI	AGCT	8 cut(s)	176, 311, 560, 803, 890, 1099, 1256, 1280
Alw26I	GTCTC	6 cut(s)	218, 298, 455, 560, 762, 1055
AlwI	GGATC	5 cut(s)	722, 735, 737, 750, 799
Ama87I	CYCGRG	1 cut(s)	731
AoxI	GGCC	3 cut(s)	230, 1157, 1301
ApoI	RAATTY	3 cut(s)	244, 282, 1260
ArsI	GACNNNNNNTTYG	2 cut(s)	544, 576
AsiGI	ACCGGT	1 cut(s)	1283
AspS9I	GGNCC	3 cut(s)	68, 292, 1157
AsuNHI	GCTAGC	1 cut(s)	172
AvaI	CYCGRG	1 cut(s)	731
AvaII	GGWCC	2 cut(s)	68, 292
BaeGI	GKGCMC	1 cut(s)	1215
BalI	TGGCCA	1 cut(s)	232
BamHI	GGATCC	2 cut(s)	727, 742
BanII	GRGCYC	1 cut(s)	115
BbsI	GAAGAC	2 cut(s)	399, 828
BccI	CCATC	6 cut(s)	52, 419, 437, 1148, 1223, 1247
BclI	TGATCA	1 cut(s)	325
BcoDI	GTCTC	6 cut(s)	218, 298, 455, 560, 762, 1055
BfaI	CTAG	7 cut(s)	173, 308, 339, 639, 804, 1100, 1178
BglII	AGATCT	1 cut(s)	779
BisI	GCNGC	1 cut(s)	1296
BlsI	GCNGC	1 cut(s)	1297
Bme18I	GGWCC	2 cut(s)	68, 292
BmeT110I	CYCGRG	1 cut(s)	731
BmgT120I	GGNCC	3 cut(s)	68, 292, 1157
BmiI	GGNNCC	2 cut(s)	729, 744
BmsI	GCATC	4 cut(s)	481, 753, 872, 1216
BmtI	GCTAGC	1 cut(s)	176
BpiI	GAAGAC	2 cut(s)	399, 828
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
Bpu10I	CCTNAGC	1 cut(s)	573
BpuEI	CTTGAG	2 cut(s)	283, 540
BsaAI	YACGTR	1 cut(s)	1196
BsaWI	WCCGGW	1 cut(s)	1283
BsaXI	ACNNNNNCTCC	2 cut(s)	913, 943
Bsc4I	CCNNNNNNNGG	2 cut(s)	417, 1166
Bse118I	RCCGGY	1 cut(s)	1283
Bse1I	ACTGG	1 cut(s)	746
Bse3DI	GCAATG	1 cut(s)	1137
BseGI	GGATG	3 cut(s)	922, 1159, 1239
BseLI	CCNNNNNNNGG	2 cut(s)	417, 1166
BseMI	GCAATG	1 cut(s)	1137
BseMII	CTCAG	2 cut(s)	564, 1215
BseNI	ACTGG	1 cut(s)	746
BseRI	GAGGAG	2 cut(s)	860, 1017
BseSI	GKGCMC	1 cut(s)	1215
BshFI	GGCC	3 cut(s)	232, 1159, 1303
BshTI	ACCGGT	1 cut(s)	1283
BsiHKCI	CYCGRG	1 cut(s)	731
BsiSI	CCGG	1 cut(s)	1284
BslFI	GGGAC	2 cut(s)	400, 996
BslI	CCNNNNNNNGG	2 cut(s)	417, 1166
BsmAI	GTCTC	6 cut(s)	218, 298, 455, 560, 762, 1055
BsmFI	GGGAC	2 cut(s)	400, 996
BsnI	GGCC	3 cut(s)	232, 1159, 1303
BsoBI	CYCGRG	1 cut(s)	731
Bsp1286I	GDGCHC	2 cut(s)	115, 1215
Bsp143I	GATC	6 cut(s)	325, 702, 727, 742, 779, 791
BspACI	CCGC	2 cut(s)	528, 1296
BspANI	GGCC	3 cut(s)	232, 1159, 1303
BspCNI	CTCAG	2 cut(s)	565, 1214
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	729, 744
BspOI	GCTAGC	1 cut(s)	176
BspPI	GGATC	5 cut(s)	722, 735, 737, 750, 799
BsrDI	GCAATG	1 cut(s)	1137
BsrFI	RCCGGY	1 cut(s)	1283
BsrI	ACTGG	1 cut(s)	746
BssAI	RCCGGY	1 cut(s)	1283
BssMI	GATC	6 cut(s)	325, 702, 727, 742, 779, 791
Bst4CI	ACNGT	2 cut(s)	1141, 1270
Bst6I	CTCTTC	5 cut(s)	53, 58, 161, 357, 1326
BstBAI	YACGTR	1 cut(s)	1196
BstC8I	GCNNGC	5 cut(s)	174, 234, 651, 1097, 1278
BstDEI	CTNAG	4 cut(s)	573, 840, 855, 1201
BstF5I	GGATG	3 cut(s)	922, 1159, 1239
BstKTI	GATC	6 cut(s)	328, 705, 730, 745, 782, 794
BstMAI	GTCTC	6 cut(s)	218, 298, 455, 560, 762, 1055
BstMBI	GATC	6 cut(s)	325, 702, 727, 742, 779, 791
BstNSI	RCATGY	2 cut(s)	712, 775
BstSLI	GKGCMC	1 cut(s)	1215
BstSNI	TACGTA	1 cut(s)	1196
BstV2I	GAAGAC	2 cut(s)	399, 828
BstX2I	RGATCY	4 cut(s)	727, 742, 779, 791
BstYI	RGATCY	4 cut(s)	727, 742, 779, 791
BsuRI	GGCC	3 cut(s)	232, 1159, 1303
BtsCI	GGATG	3 cut(s)	922, 1159, 1239
BtsI	GCAGTG	2 cut(s)	243, 592
BtsIMutI	CAGTG	3 cut(s)	27, 243, 592
Cac8I	GCNNGC	5 cut(s)	174, 234, 651, 1097, 1278
CciI	TCATGA	1 cut(s)	286
Cfr10I	RCCGGY	1 cut(s)	1283
Cfr13I	GGNCC	3 cut(s)	68, 292, 1157
Csp6I	GTAC	2 cut(s)	625, 1287
CspAI	ACCGGT	1 cut(s)	1283
CviQI	GTAC	2 cut(s)	625, 1287
DdeI	CTNAG	4 cut(s)	573, 840, 855, 1201
DpnI	GATC	6 cut(s)	327, 704, 729, 744, 781, 793
DpnII	GATC	6 cut(s)	325, 702, 727, 742, 779, 791
EaeI	YGGCCR	1 cut(s)	230
Eam1104I	CTCTTC	5 cut(s)	53, 58, 161, 357, 1326
EarI	CTCTTC	5 cut(s)	53, 58, 161, 357, 1326
Eco105I	TACGTA	1 cut(s)	1196
Eco24I	GRGCYC	1 cut(s)	115
Eco47I	GGWCC	2 cut(s)	68, 292
Eco57I	CTGAAG	2 cut(s)	51, 411
Eco88I	CYCGRG	1 cut(s)	731
EcoRI	GAATTC	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	115
FalI	AAGNNNNNCTT	2 cut(s)	611, 643
FaqI	GGGAC	2 cut(s)	400, 996
FauNDI	CATATG	1 cut(s)	220
FbaI	TGATCA	1 cut(s)	325
FblI	GTMKAC	2 cut(s)	816, 1107
Fnu4HI	GCNGC	1 cut(s)	1296
FokI	GGATG	3 cut(s)	929, 1166, 1226
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	1 cut(s)	1296
FspBI	CTAG	7 cut(s)	173, 308, 339, 639, 804, 1100, 1178
GluI	GCNGC	1 cut(s)	1296
HaeIII	GGCC	3 cut(s)	232, 1159, 1303
HapII	CCGG	1 cut(s)	1284
HincII	GTYRAC	1 cut(s)	817
HindII	GTYRAC	1 cut(s)	817
HindIII	AAGCTT	1 cut(s)	558
HinfI	GANTC	2 cut(s)	5, 553
HpaII	CCGG	1 cut(s)	1284
Hpy166II	GTNNAC	4 cut(s)	625, 714, 817, 1108
Hpy188I	TCNGA	7 cut(s)	10, 49, 85, 483, 779, 796, 868
Hpy188III	TCNNGA	5 cut(s)	278, 287, 418, 639, 731
Hpy8I	GTNNAC	4 cut(s)	625, 714, 817, 1108
Hpy99I	CGWCG	1 cut(s)	818
HpyAV	CCTTC	1 cut(s)	952
HpyCH4III	ACNGT	2 cut(s)	1141, 1270
HpyCH4IV	ACGT	2 cut(s)	475, 1195
HpyCH4V	TGCA	4 cut(s)	316, 653, 1095, 1130
HpyF3I	CTNAG	4 cut(s)	573, 840, 855, 1201
HpySE526I	ACGT	2 cut(s)	475, 1195
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	6 cut(s)	325, 702, 727, 742, 779, 791
LmnI	GCTCC	4 cut(s)	267, 815, 1004, 1181
LpnPI	CCDG	9 cut(s)	246, 263, 403, 585, 585, 663, 713, 759, 1297
LweI	GCATC	4 cut(s)	481, 753, 872, 1216
MaeI	CTAG	7 cut(s)	173, 308, 339, 639, 804, 1100, 1178
MaeII	ACGT	2 cut(s)	475, 1195
MaeIII	GTNAC	3 cut(s)	446, 610, 1323
MalI	GATC	6 cut(s)	327, 704, 729, 744, 781, 793
MboI	GATC	6 cut(s)	325, 702, 727, 742, 779, 791
MfeI	CAATTG	4 cut(s)	150, 665, 933, 968
MflI	RGATCY	4 cut(s)	727, 742, 779, 791
MhlI	GDGCHC	2 cut(s)	115, 1215
MlsI	TGGCCA	1 cut(s)	232
MluNI	TGGCCA	1 cut(s)	232
MlyI	GAGTC	1 cut(s)	547
MmeI	TCCRAC	5 cut(s)	95, 651, 663, 720, 1131
Mox20I	TGGCCA	1 cut(s)	232
MscI	TGGCCA	1 cut(s)	232
MseI	TTAA	5 cut(s)	252, 497, 630, 750, 1319
MslI	CAYNNNNRTG	1 cut(s)	321
Msp20I	TGGCCA	1 cut(s)	232
MspA1I	CMGCKG	2 cut(s)	530, 1256
MspI	CCGG	1 cut(s)	1284
MunI	CAATTG	4 cut(s)	150, 665, 933, 968
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	6 cut(s)	325, 702, 727, 742, 779, 791
NheI	GCTAGC	1 cut(s)	172
NlaIV	GGNNCC	2 cut(s)	729, 744
NmuCI	GTSAC	1 cut(s)	1323
NspI	RCATGY	2 cut(s)	712, 775
PagI	TCATGA	1 cut(s)	286
PciI	ACATGT	2 cut(s)	708, 771
PfeI	GAWTC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	417
PinAI	ACCGGT	1 cut(s)	1283
PkrI	GCNGC	1 cut(s)	1297
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
Ppu21I	YACGTR	1 cut(s)	1196
PscI	ACATGT	2 cut(s)	708, 771
PsiI	TTATAA	1 cut(s)	1355
PspN4I	GGNNCC	2 cut(s)	729, 744
PspPI	GGNCC	3 cut(s)	68, 292, 1157
PsuI	RGATCY	4 cut(s)	727, 742, 779, 791
PvuII	CAGCTG	1 cut(s)	1256
RsaI	GTAC	2 cut(s)	626, 1288
RsaNI	GTAC	2 cut(s)	625, 1287
RseI	CAYNNNNRTG	1 cut(s)	321
SalI	GTCGAC	1 cut(s)	815
SaqAI	TTAA	5 cut(s)	252, 497, 630, 750, 1319
SatI	GCNGC	1 cut(s)	1296
Sau3AI	GATC	6 cut(s)	325, 702, 727, 742, 779, 791
Sau96I	GGNCC	3 cut(s)	68, 292, 1157
SchI	GAGTC	1 cut(s)	547
SduI	GDGCHC	2 cut(s)	115, 1215
SfaNI	GCATC	4 cut(s)	481, 753, 872, 1216
SinI	GGWCC	2 cut(s)	68, 292
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	2 cut(s)	298, 555
SmoI	CTYRAG	2 cut(s)	298, 555
SnaBI	TACGTA	1 cut(s)	1196
SsiI	CCGC	2 cut(s)	528, 1296
SspMI	CTAG	7 cut(s)	173, 308, 339, 639, 804, 1100, 1178
TaaI	ACNGT	2 cut(s)	1141, 1270
TaiI	ACGT	2 cut(s)	478, 1198
TaqI	TCGA	5 cut(s)	115, 199, 331, 816, 1306
TatI	WGTACW	1 cut(s)	624
TauI	GCSGC	1 cut(s)	1298
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	5 cut(s)	252, 497, 630, 750, 1319
Tru9I	TTAA	5 cut(s)	252, 497, 630, 750, 1319
TscAI	CASTG	3 cut(s)	34, 243, 592
TseFI	GTSAC	1 cut(s)	1323
Tsp45I	GTSAC	1 cut(s)	1323
TspDTI	ATGAA	3 cut(s)	83, 275, 1344
TspGWI	ACGGA	1 cut(s)	802
TspRI	CASTG	3 cut(s)	34, 243, 592
Van91I	CCANNNNNTGG	1 cut(s)	417
VpaK11BI	GGWCC	2 cut(s)	68, 292
XapI	RAATTY	3 cut(s)	244, 282, 1260
XbaI	TCTAGA	1 cut(s)	638
XceI	RCATGY	2 cut(s)	712, 775
XmiI	GTMKAC	2 cut(s)	816, 1107
XspI	CTAG	7 cut(s)	173, 308, 339, 639, 804, 1100, 1178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.