Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Reverse (-)

19898788 .. 19900235

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCGACACAGTCAGTTAACGCAGTGATCGTTGATCTTCCCGGAGATGTAAACGACGACGGCGATAATTCCGATTGTTTCATCTTCTCCACTCCTCCTCTCTCTGCACGTGGTTCCACAAAGCGTGATGCTATTTCCGTTGAGAATTACGATCGTGATCGGAAACTTCAACGTCTCTGGGTCTACCCTCCTCACAAAACCGTAATCAAGTCAGAATCTCCAATTTACATAGATCTTGATCTTTACGATGATGAAGACGATGATATCAGAATCCTCTGTTTCGCACCACCAATCCACAGAGAAAAGGGTCAGTCTTCTTCGTCAAAGACGGCGACTTTCGACTGTGAGATATGTGTTGATTCAAAATCCATAATTGAGTCGTTTCGTATCGGTGGATGCTCTCACTTCTACTGCAACGACTGTGTTTCGAAATATATAGCAGCTAAATTACAAGACAACATTCTCTCAATCGAATGTCCTGTCTCTGGTTGTTCTGGTCGGCTCGAGCCAGATCAGTGTCGTCAGATTTTGCCTAAAGAGGTTTTTGATCGGTGGGGTGATGCTTTGTGTGAAGCAGTAGTGATGCGTTCGAAGAAATTCTACTGTCCTTACAAGGATTGCTCTGCTTTGGTTTTCTTAGAAGAGAGTGAAGTAAAGATGAAAGATTCGGAGTGTCCTCATTGTCATAGAATGGTGTGTGTGGAGTGTGGGACTCAGTGGCATCCGGAGATGACTTGCGAGGAGTTTCAGAAGCTAGCGGCGAACGAGAGAGGAAGAGATGATATTTTGCTTGCGACGATGGCAAAGCAAAAGAAATGGAAAAGATGTCCTTCTTGCAAATTCTATATTGAGAAATCTCAGGGTTGCTTATACATGAAGTGCAGGTGTGGGTTGGCTTTTTGCTACAACTGTGGAACTCCATCGAGGGACCATACTCATTATTGTTATAATTGTAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

320

Amino Acids

36.55

Weight (kDa)

5.95

Isoelectric Point (pI)

64.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	185 - 246	1.9e-10	IBR domain, a half RING-finger domain
IBR	PF01485	265 - 311	9.4e-06	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	948
AarI	CACCTGC	1 cut(s)	873
Acc36I	ACCTGC	1 cut(s)	873
AccI	GTMKAC	1 cut(s)	183
AccIII	TCCGGA	1 cut(s)	724
AciI	CCGC	1 cut(s)	758
AcsI	RAATTY	2 cut(s)	596, 839
AcvI	CACGTG	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	485
AgsI	TTSAA	2 cut(s)	170, 363
AluBI	AGCT	2 cut(s)	443, 754
AluI	AGCT	2 cut(s)	443, 754
Alw26I	GTCTC	2 cut(s)	179, 487
Ama87I	CYCGRG	1 cut(s)	503
Aor13HI	TCCGGA	1 cut(s)	724
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	2 cut(s)	596, 839
ArsI	GACNNNNNNTTYG	2 cut(s)	465, 497
Asp700I	GAANNNNTTC	1 cut(s)	596
AspS9I	GGNCC	1 cut(s)	928
AsuC2I	CCSGG	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	569
AsuII	TTCGAA	2 cut(s)	428, 590
AsuNHI	GCTAGC	1 cut(s)	754
AvaI	CYCGRG	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	928
BarI	GAAGNNNNNNTAC	2 cut(s)	584, 616
BbrPI	CACGTG	1 cut(s)	110
BbsI	GAAGAC	2 cut(s)	261, 306
BbvI	GCAGC	1 cut(s)	452
BccI	CCATC	2 cut(s)	793, 928
BceAI	ACGGC	2 cut(s)	76, 345
BcnI	CCSGG	1 cut(s)	42
BcoDI	GTCTC	2 cut(s)	179, 487
BfaI	CTAG	1 cut(s)	755
BfuAI	ACCTGC	1 cut(s)	873
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	2 cut(s)	441, 759
BlsI	GCNGC	2 cut(s)	442, 760
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	1 cut(s)	928
BmeT110I	CYCGRG	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	928
BmiI	GGNNCC	2 cut(s)	115, 929
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	5 cut(s)	118, 386, 550, 573, 730
BmtI	GCTAGC	1 cut(s)	758
BpiI	GAAGAC	2 cut(s)	261, 306
Bpu14I	TTCGAA	2 cut(s)	428, 590
BpuMI	CCSGG	1 cut(s)	42
BsaAI	YACGTR	1 cut(s)	110
BsaBI	GATNNNNATC	2 cut(s)	156, 237
BsaWI	WCCGGW	1 cut(s)	724
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse8I	GATNNNNATC	2 cut(s)	156, 237
BseAI	TCCGGA	1 cut(s)	724
BseGI	GGATG	2 cut(s)	401, 721
BseJI	GATNNNNATC	2 cut(s)	156, 237
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMII	CTCAG	2 cut(s)	728, 872
BseRI	GAGGAG	4 cut(s)	84, 87, 180, 755
BseXI	GCAGC	1 cut(s)	452
BsgI	GTGCAG	2 cut(s)	90, 901
Bsh1285I	CGRYCG	1 cut(s)	154
BsiEI	CGRYCG	1 cut(s)	154
BsiHKCI	CYCGRG	1 cut(s)	503
BsiSI	CCGG	2 cut(s)	42, 725
BslFI	GGGAC	2 cut(s)	724, 941
BslI	CCNNNNNNNGG	1 cut(s)	485
BsmAI	GTCTC	2 cut(s)	179, 487
BsmBI	CGTCTC	1 cut(s)	179
BsmFI	GGGAC	2 cut(s)	724, 941
BsoBI	CYCGRG	1 cut(s)	503
Bsp119I	TTCGAA	2 cut(s)	428, 590
Bsp13I	TCCGGA	1 cut(s)	724
Bsp143I	GATC	8 cut(s)	27, 34, 151, 157, 232, 238, 511, 547
BspACI	CCGC	1 cut(s)	758
BspCNI	CTCAG	2 cut(s)	727, 871
BspEI	TCCGGA	1 cut(s)	724
BspLI	GGNNCC	2 cut(s)	115, 929
BspMI	ACCTGC	1 cut(s)	873
BspOI	GCTAGC	1 cut(s)	758
BspT104I	TTCGAA	2 cut(s)	428, 590
BssMI	GATC	8 cut(s)	27, 34, 151, 157, 232, 238, 511, 547
Bst4CI	ACNGT	6 cut(s)	12, 202, 344, 422, 605, 911
Bst6I	CTCTTC	2 cut(s)	636, 769
BstBAI	YACGTR	1 cut(s)	110
BstBI	TTCGAA	2 cut(s)	428, 590
BstC8I	GCNNGC	2 cut(s)	756, 792
BstDEI	CTNAG	3 cut(s)	637, 714, 858
BstF5I	GGATG	2 cut(s)	401, 721
BstKTI	GATC	8 cut(s)	30, 37, 154, 160, 235, 241, 514, 550
BstMAI	GTCTC	2 cut(s)	179, 487
BstMBI	GATC	8 cut(s)	27, 34, 151, 157, 232, 238, 511, 547
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	800
BstSCI	CCNGG	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	452
BstV2I	GAAGAC	2 cut(s)	261, 306
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	401, 721
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	3 cut(s)	30, 521, 722
BveI	ACCTGC	1 cut(s)	873
Cac8I	GCNNGC	2 cut(s)	756, 792
Cfr13I	GGNCC	1 cut(s)	928
CviAII	CATG	1 cut(s)	874
CviJI	RGCY	5 cut(s)	443, 502, 508, 754, 896
CviKI_1	RGCY	5 cut(s)	443, 502, 508, 754, 896
DdeI	CTNAG	3 cut(s)	637, 714, 858
DpnI	GATC	8 cut(s)	29, 36, 153, 159, 234, 240, 513, 549
DpnII	GATC	8 cut(s)	27, 34, 151, 157, 232, 238, 511, 547
Eam1104I	CTCTTC	2 cut(s)	636, 769
EarI	CTCTTC	2 cut(s)	636, 769
Eco32I	GATATC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	928
Eco72I	CACGTG	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	503
EcoRV	GATATC	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	1 cut(s)	877
FalI	AAGNNNNNCTT	2 cut(s)	814, 846
FaqI	GGGAC	2 cut(s)	724, 941
FatI	CATG	1 cut(s)	873
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	441, 759
FokI	GGATG	2 cut(s)	408, 708
Fsp4HI	GCNGC	2 cut(s)	441, 759
FspBI	CTAG	1 cut(s)	755
GluI	GCNGC	2 cut(s)	441, 759
HapII	CCGG	2 cut(s)	42, 725
Hin1II	CATG	1 cut(s)	877
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	6 cut(s)	215, 270, 359, 377, 665, 712
HpaI	GTTAAC	1 cut(s)	19
HpaII	CCGG	2 cut(s)	42, 725
HphI	GGTGA	1 cut(s)	569
Hpy166II	GTNNAC	3 cut(s)	19, 52, 184
Hpy188I	TCNGA	7 cut(s)	73, 162, 214, 269, 525, 670, 750
Hpy188III	TCNNGA	3 cut(s)	155, 236, 725
Hpy8I	GTNNAC	3 cut(s)	19, 52, 184
Hpy99I	CGWCG	3 cut(s)	59, 62, 799
HpyAV	CCTTC	1 cut(s)	840
HpyCH4III	ACNGT	6 cut(s)	12, 202, 344, 422, 605, 911
HpyCH4IV	ACGT	2 cut(s)	109, 172
HpyCH4V	TGCA	4 cut(s)	107, 414, 837, 882
HpyF10VI	GCNNNNNNNGC	1 cut(s)	800
HpyF3I	CTNAG	3 cut(s)	637, 714, 858
HpySE526I	ACGT	2 cut(s)	109, 172
Hsp92II	CATG	1 cut(s)	877
Kpn2I	TCCGGA	1 cut(s)	724
KspAI	GTTAAC	1 cut(s)	19
Kzo9I	GATC	8 cut(s)	27, 34, 151, 157, 232, 238, 511, 547
LpnPI	CCDG	9 cut(s)	55, 163, 471, 480, 492, 522, 738, 845, 868
Lsp1109I	GCAGC	1 cut(s)	452
LweI	GCATC	5 cut(s)	118, 386, 550, 573, 730
MaeI	CTAG	1 cut(s)	755
MaeII	ACGT	2 cut(s)	109, 172
MalI	GATC	8 cut(s)	29, 36, 153, 159, 234, 240, 513, 549
MboI	GATC	8 cut(s)	27, 34, 151, 157, 232, 238, 511, 547
MboII	GAAGA	8 cut(s)	29, 76, 266, 306, 309, 604, 653, 786
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	8 cut(s)	67, 145, 222, 372, 446, 596, 839, 949
MlyI	GAGTC	2 cut(s)	386, 706
MroI	TCCGGA	1 cut(s)	724
MroXI	GAANNNNTTC	1 cut(s)	596
MseI	TTAA	1 cut(s)	18
MspI	CCGG	2 cut(s)	42, 725
MspR9I	CCNGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	800
NciI	CCSGG	1 cut(s)	42
NdeII	GATC	8 cut(s)	27, 34, 151, 157, 232, 238, 511, 547
NheI	GCTAGC	1 cut(s)	754
NlaIII	CATG	1 cut(s)	877
NlaIV	GGNNCC	2 cut(s)	115, 929
NspV	TTCGAA	2 cut(s)	428, 590
PaeR7I	CTCGAG	1 cut(s)	503
PaqCI	CACCTGC	1 cut(s)	873
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 60
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	4 cut(s)	215, 270, 359, 665
PflFI	GACNNNGTC	1 cut(s)	10
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	442, 760
Ple19I	CGATCG	1 cut(s)	154
PleI	GAGTC	2 cut(s)	385, 706
PmaCI	CACGTG	1 cut(s)	110
PmlI	CACGTG	1 cut(s)	110
PpsI	GAGTC	2 cut(s)	385, 706
Ppu21I	YACGTR	1 cut(s)	110
PsiI	TTATAA	1 cut(s)	948
PspCI	CACGTG	1 cut(s)	110
PspN4I	GGNNCC	2 cut(s)	115, 929
PspPI	GGNCC	1 cut(s)	928
PspXI	VCTCGAGB	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	232
PsyI	GACNNNGTC	1 cut(s)	10
PvuI	CGATCG	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	2 cut(s)	441, 759
Sau3AI	GATC	8 cut(s)	27, 34, 151, 157, 232, 238, 511, 547
Sau96I	GGNCC	1 cut(s)	928
SchI	GAGTC	2 cut(s)	386, 706
ScrFI	CCNGG	1 cut(s)	42
SetI	ASST	6 cut(s)	112, 175, 445, 543, 756, 887
SfaNI	GCATC	5 cut(s)	118, 386, 550, 573, 730
Sfr274I	CTCGAG	1 cut(s)	503
SfuI	TTCGAA	2 cut(s)	428, 590
SinI	GGWCC	1 cut(s)	928
SlaI	CTCGAG	1 cut(s)	503
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	8 cut(s)	67, 145, 222, 372, 446, 596, 839, 949
SsiI	CCGC	1 cut(s)	758
SspMI	CTAG	1 cut(s)	755
StyD4I	CCNGG	1 cut(s)	40
TaaI	ACNGT	6 cut(s)	12, 202, 344, 422, 605, 911
TaiI	ACGT	2 cut(s)	112, 175
TaqI	TCGA	6 cut(s)	339, 428, 471, 504, 590, 923
TasI	AATT	8 cut(s)	67, 145, 222, 372, 446, 596, 839, 949
TauI	GCSGC	1 cut(s)	761
TfiI	GAWTC	4 cut(s)	215, 270, 359, 665
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	3 cut(s)	30, 521, 722
TseI	GCWGC	1 cut(s)	440
TspDTI	ATGAA	4 cut(s)	70, 267, 674, 890
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	3 cut(s)	30, 521, 722
Tth111I	GACNNNGTC	1 cut(s)	10
VpaK11BI	GGWCC	1 cut(s)	928
XapI	RAATTY	2 cut(s)	596, 839
XhoI	CTCGAG	1 cut(s)	503
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	596
XspI	CTAG	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.