Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Forward (+)

8255648 .. 8258760

Gene Structure 3113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016617

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1746 bp

ATGATGAAGAACTATCACCAGATGAAAAAGGGTGCAGAACGACTCAAGGAAATCGGTGCCAAACTGCGTAGCCTCAATTCCATCTTACGTAAACTCTCACTAAGCCGGAAAATAACCAAGTCTCCGTCGCCGTCTCAGCCTCTGATGTTGGAGAACCAACCCCATCATCATCACACCGTTGATCATGATCACGATCACATGAACCCCCTAATCTTCTCCAATGGACAATCTTCCGCTAGTACTAATTTTGATATTCCTAGTAGTACTTTCATATGTGGTTTGTGTCTTAAGCCTATTCAACTCGAAGACTCATTCGACTTCAAGGGCTGTCCCCATTTTTATTGTACTCCATGCATTGTGAACTTTGTAGTCTCCAAGCTCCAAGACAATGCCGATTGGGCTCTGCAATGCCCTGTGCCAACCTGCACCGGAACACTAGACCCTGACTACTGCCGGCCAATCCTTCCGAGGCAGGTTTTTGATTCGTGGATGAATGCATTGTGTGATCAGATTGAGCAATCTTCTTATGGTGCCGAAAGCAGTAATAGTGGTACTACTTTTACATGTGCTTTTTGTGTTGAGGAAAAGCATCTGAGTGACTCGTTTAGTGTCAAAGATTGCAGCCATTTTTACTGCCACCAATGCATCGTCAATTTTGTGGTGTCAAAGCTGGAGGACAATGTGACCTCCATTGCGTGTCCCGAGCCGGGCTGCAGAGGAGTGCTAGACCTGCAGTACTGTCAGCCAATTCTCCCGAAAAATGTTCTTGATTGGTGGGGGAAGGCCTTGTGTGAAAATGTGATTTTGAGGTCGGAGAACAATGACAAGTATTTCTACTGTCCCTTCAAGGATTGCTCGGCACTGCTGGTTGTTGACGATCCGGAGGATGAGCATGATATATTCAAGTCTCGGTGTCCTCATTGCAAGAGAGAGGTCTGCTTGAATTGCAAGGTTCCTTGGCATACGGAGTTCAACTGCGACAAGTTTCAGAAATTGAGAGACAAGGGTGAAGATGAGATGGTGAAGGAGCTTGCCAAGAAAAAGAAGTGGAGAAAGTGCCCAAAATGCAACTACTATGTTGAGAAAAAATATGGGTGCACTTACATTAAATGCAGGTGTAGGCATGCTTTCTGTTACAACTGTGGAATAGCAGCTGCCGTTGATGTTCATCTGGAGGACTCATTGGACGTCAAGGGTTGCAATCATTTTTACTGTCGACAATGCATTGTTAATTTCGAATCGTCCAAGCTCGATGACAACGTCACGTCCATTATGTGCCCTGAAGCAGGCTGCAGTGGAGTGCTAGACCCTGATACTAGCAATGGCACTAGTACTTTCATATGTGATCTCTGCGTTAAGTCATTTCCGCTTGAAGAGTCATTCAACATCAAGGGTTGCAGCCACTTTTACTGTCAGCAGTGCATAGTTAATTTCGTATCATCGAAGCTCCAAGACAATGTCACCTCCATTGAGTGCCCCGATCCAGGCTGCTGGGGACTGTCATCCAATCCTCCAAACGACATCTACGACCGGTGGGGAAAAGCCCTATGTGAAAATGTGATCATGGGATCCGAAAGCACTATGAACTACTTCTACTGTCCCTTTGCAGATTGCTCGGCGCTGTTGATTTGTGACGAACAGAATCAGAATGAGTCTCACTGTCCTCACTGCGAGAGAGCGGTCTGCGCCAAGTGTAAGGTTCCTTGGCATAACGAATTTAATTGTGACGAGTTTCAAAGGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

582

Amino Acids

66.13

Weight (kDa)

5.88

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	272 - 326	1.9e-09	IBR domain, a half RING-finger domain
IBR	PF01485	340 - 383	1.3e-06	IBR domain, a half RING-finger domain
IBR	PF01485	525 - 575	1.4e-08	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1104
AatII	GACGTC	1 cut(s)	1191
Acc36I	ACCTGC	4 cut(s)	431, 463, 738, 1104
AccB1I	GGYRCC	2 cut(s)	56, 530
AccBSI	CCGCTC	1 cut(s)	1679
AccI	GTMKAC	1 cut(s)	1216
AccIII	TCCGGA	1 cut(s)	880
AciI	CCGC	3 cut(s)	234, 1367, 1679
AclWI	GGATC	4 cut(s)	872, 1475, 1563, 1576
AcoI	YGGCCR	1 cut(s)	455
AcsI	RAATTY	1 cut(s)	1715
AcuI	CTGAAG	1 cut(s)	1302
AcyI	GRCGYC	1 cut(s)	1188
AfaI	GTAC	6 cut(s)	241, 265, 346, 553, 737, 1333
AfiI	CCNNNNNNNGG	3 cut(s)	707, 1286, 1484
AflII	CTTAAG	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	563
AgeI	ACCGGT	1 cut(s)	1530
AgsI	TTSAA	9 cut(s)	299, 322, 847, 904, 943, 973, 1373, 1384, 1736
AhlI	ACTAGT	1 cut(s)	1328
AjiI	CACGTC	1 cut(s)	1266
AjnI	CCWGG	1 cut(s)	1483
AluBI	AGCT	6 cut(s)	379, 670, 1030, 1154, 1249, 1447
AluI	AGCT	6 cut(s)	379, 670, 1030, 1154, 1249, 1447
Alw21I	GWGCWC	1 cut(s)	1100
Alw26I	GTCTC	6 cut(s)	126, 138, 376, 912, 993, 1659
Alw44I	GTGCAC	1 cut(s)	1096
AlwI	GGATC	4 cut(s)	872, 1475, 1563, 1576
AlwNI	CAGNNNCTG	1 cut(s)	142
Ama87I	CYCGRG	1 cut(s)	701
Aor13HI	TCCGGA	1 cut(s)	880
AoxI	GGCC	2 cut(s)	455, 783
ApaLI	GTGCAC	1 cut(s)	1096
ApeKI	GCWGC	7 cut(s)	621, 711, 1151, 1154, 1290, 1398, 1488
ApoI	RAATTY	1 cut(s)	1715
AsiGI	ACCGGT	1 cut(s)	1530
Asp700I	GAANNNNTTC	1 cut(s)	1589
AspLEI	GCGC	2 cut(s)	1621, 1688
AsuC2I	CCSGG	1 cut(s)	708
AsuHPI	GGTGA	4 cut(s)	8, 1019, 1033, 1453
AsuII	TTCGAA	1 cut(s)	1236
AvaI	CYCGRG	1 cut(s)	701
BaeGI	GKGCMC	4 cut(s)	1061, 1100, 1280, 1478
BamHI	GGATCC	1 cut(s)	1568
BanI	GGYRCC	2 cut(s)	56, 530
BanII	GRGCYC	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	1100
BbvI	GCAGC	7 cut(s)	633, 698, 1141, 1163, 1277, 1410, 1475
BccI	CCATC	3 cut(s)	89, 171, 1012
BceAI	ACGGC	2 cut(s)	115, 1142
BcgI	CGANNNNNNTGC	2 cut(s)	1596, 1630
BciT130I	CCWGG	1 cut(s)	1485
BclI	TGATCA	4 cut(s)	181, 187, 505, 1560
BcnI	CCSGG	1 cut(s)	708
BcoDI	GTCTC	6 cut(s)	126, 138, 376, 912, 993, 1659
BcuI	ACTAGT	1 cut(s)	1328
BfaI	CTAG	7 cut(s)	237, 258, 437, 725, 1304, 1317, 1329
BfmI	CTRYAG	3 cut(s)	712, 731, 1291
BfoI	RGCGCY	1 cut(s)	1622
BfrI	CTTAAG	1 cut(s)	287
BfuAI	ACCTGC	4 cut(s)	431, 463, 738, 1104
BglI	GCCNNNNNGGC	1 cut(s)	398
BisI	GCNGC	7 cut(s)	622, 712, 1152, 1155, 1291, 1399, 1489
BlsI	GCNGC	7 cut(s)	623, 713, 1153, 1156, 1292, 1400, 1490
BmcAI	AGTACT	4 cut(s)	241, 265, 737, 1333
Bme1390I	CCNGG	2 cut(s)	708, 1485
BmeT110I	CYCGRG	1 cut(s)	701
BmgBI	CACGTC	1 cut(s)	1266
BmiI	GGNNCC	5 cut(s)	58, 532, 954, 1570, 1701
BmrFI	CCNGG	2 cut(s)	708, 1485
BmsI	GCATC	2 cut(s)	598, 654
BpiI	GAAGAC	1 cut(s)	312
BpmI	CTGGAG	2 cut(s)	692, 1193
Bpu14I	TTCGAA	1 cut(s)	1236
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	708
BsaAI	YACGTR	1 cut(s)	89
BsaBI	GATNNNNATC	3 cut(s)	186, 192, 1167
BsaHI	GRCGYC	1 cut(s)	1188
BsaJI	CCNNGG	3 cut(s)	467, 956, 1703
BsaWI	WCCGGW	3 cut(s)	428, 880, 1530
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	3 cut(s)	707, 1286, 1484
Bse118I	RCCGGY	2 cut(s)	453, 1530
Bse3DI	GCAATG	4 cut(s)	413, 690, 919, 1327
Bse8I	GATNNNNATC	3 cut(s)	186, 192, 1167
BseAI	TCCGGA	1 cut(s)	880
BseBI	CCWGG	1 cut(s)	1485
BseDI	CCNNGG	3 cut(s)	467, 956, 1703
BseGI	GGATG	3 cut(s)	495, 892, 1502
BseJI	GATNNNNATC	3 cut(s)	186, 192, 1167
BseLI	CCNNNNNNNGG	3 cut(s)	707, 1286, 1484
BseMI	GCAATG	4 cut(s)	413, 690, 919, 1327
BseMII	CTCAG	2 cut(s)	149, 584
BseRI	GAGGAG	1 cut(s)	732
BseSI	GKGCMC	4 cut(s)	1061, 1100, 1280, 1478
BseXI	GCAGC	7 cut(s)	633, 698, 1141, 1163, 1277, 1410, 1475
BseYI	CCCAGC	1 cut(s)	1491
BsgI	GTGCAG	2 cut(s)	54, 409
Bsh1285I	CGRYCG	1 cut(s)	1531
BshFI	GGCC	2 cut(s)	457, 785
BshNI	GGYRCC	2 cut(s)	56, 530
BshTI	ACCGGT	1 cut(s)	1530
BsiEI	CGRYCG	1 cut(s)	1531
BsiHKAI	GWGCWC	1 cut(s)	1100
BsiHKCI	CYCGRG	1 cut(s)	701
BsiSI	CCGG	6 cut(s)	106, 429, 454, 707, 881, 1531
BslFI	GGGAC	5 cut(s)	315, 684, 825, 1509, 1584
BslI	CCNNNNNNNGG	3 cut(s)	707, 1286, 1484
BsmAI	GTCTC	6 cut(s)	126, 138, 376, 912, 993, 1659
BsmBI	CGTCTC	1 cut(s)	138
BsmFI	GGGAC	5 cut(s)	315, 684, 825, 1509, 1584
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	2 cut(s)	457, 785
BsoBI	CYCGRG	1 cut(s)	701
Bsp119I	TTCGAA	1 cut(s)	1236
Bsp1286I	GDGCHC	5 cut(s)	403, 1061, 1100, 1280, 1478
Bsp13I	TCCGGA	1 cut(s)	880
Bsp143I	GATC	9 cut(s)	181, 187, 193, 505, 877, 1345, 1480, 1560, 1568
BspACI	CCGC	3 cut(s)	234, 1367, 1679
BspANI	GGCC	2 cut(s)	457, 785
BspCNI	CTCAG	2 cut(s)	148, 585
BspEI	TCCGGA	1 cut(s)	880
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	5 cut(s)	58, 532, 954, 1570, 1701
BspMAI	CTGCAG	3 cut(s)	716, 735, 1295
BspMI	ACCTGC	4 cut(s)	431, 463, 738, 1104
BspPI	GGATC	4 cut(s)	872, 1475, 1563, 1576
BspT104I	TTCGAA	1 cut(s)	1236
BspT107I	GGYRCC	2 cut(s)	56, 530
BspTI	CTTAAG	1 cut(s)	287
BsrBI	CCGCTC	1 cut(s)	1679
BsrDI	GCAATG	4 cut(s)	413, 690, 919, 1327
BsrFI	RCCGGY	2 cut(s)	453, 1530
BssAI	RCCGGY	2 cut(s)	453, 1530
BssECI	CCNNGG	3 cut(s)	467, 956, 1703
BssMI	GATC	9 cut(s)	181, 187, 193, 505, 877, 1345, 1480, 1560, 1568
BssNI	GRCGYC	1 cut(s)	1188
BssT1I	CCWWGG	2 cut(s)	956, 1703
Bst2UI	CCWGG	1 cut(s)	1485
Bst4CI	ACNGT	9 cut(s)	178, 740, 839, 1142, 1214, 1412, 1500, 1598, 1661
Bst6I	CTCTTC	1 cut(s)	1368
BstACI	GRCGYC	1 cut(s)	1188
BstAFI	CTTAAG	1 cut(s)	287
BstBAI	YACGTR	1 cut(s)	89
BstBI	TTCGAA	1 cut(s)	1236
BstC8I	GCNNGC	4 cut(s)	455, 1032, 1125, 1288
BstDEI	CTNAG	3 cut(s)	101, 135, 593
BstENI	CCTNNNNNAGG	1 cut(s)	1284
BstF5I	GGATG	3 cut(s)	495, 892, 1502
BstH2I	RGCGCY	1 cut(s)	1622
BstHHI	GCGC	2 cut(s)	1621, 1688
BstKTI	GATC	9 cut(s)	184, 190, 196, 508, 880, 1348, 1483, 1563, 1571
BstMAI	GTCTC	6 cut(s)	126, 138, 376, 912, 993, 1659
BstMBI	GATC	9 cut(s)	181, 187, 193, 505, 877, 1345, 1480, 1560, 1568
BstMCI	CGRYCG	1 cut(s)	1531
BstMWI	GCNNNNNNNGC	7 cut(s)	136, 398, 642, 730, 945, 1065, 1685
BstNI	CCWGG	1 cut(s)	1485
BstNSI	RCATGY	2 cut(s)	567, 1127
BstSCI	CCNGG	2 cut(s)	706, 1483
BstSFI	CTRYAG	3 cut(s)	712, 731, 1291
BstSLI	GKGCMC	4 cut(s)	1061, 1100, 1280, 1478
BstSNI	TACGTA	1 cut(s)	89
BstV1I	GCAGC	7 cut(s)	633, 698, 1141, 1163, 1277, 1410, 1475
BstV2I	GAAGAC	1 cut(s)	312
BstX2I	RGATCY	1 cut(s)	1568
BstXI	CCANNNNNNTGG	1 cut(s)	1491
BstYI	RGATCY	1 cut(s)	1568
BsuRI	GGCC	2 cut(s)	457, 785
BtrI	CACGTC	1 cut(s)	1266
BtsCI	GGATG	3 cut(s)	495, 892, 1502
BtsI	GCAGTG	4 cut(s)	860, 1300, 1424, 1666
BtsIMutI	CAGTG	5 cut(s)	860, 1300, 1424, 1657, 1666
BveI	ACCTGC	4 cut(s)	431, 463, 738, 1104
Cac8I	GCNNGC	4 cut(s)	455, 1032, 1125, 1288
CaiI	CAGNNNCTG	1 cut(s)	142
CciI	TCATGA	1 cut(s)	184
CfoI	GCGC	2 cut(s)	1621, 1688
Cfr10I	RCCGGY	2 cut(s)	453, 1530
Csp6I	GTAC	6 cut(s)	240, 264, 345, 552, 736, 1332
CspAI	ACCGGT	1 cut(s)	1530
CviAII	CATG	7 cut(s)	185, 199, 351, 564, 893, 1124, 1564
CviQI	GTAC	6 cut(s)	240, 264, 345, 552, 736, 1332
DdeI	CTNAG	3 cut(s)	101, 135, 593
DpnI	GATC	9 cut(s)	183, 189, 195, 507, 879, 1347, 1482, 1562, 1570
DpnII	GATC	9 cut(s)	181, 187, 193, 505, 877, 1345, 1480, 1560, 1568
EaeI	YGGCCR	1 cut(s)	455
Eam1104I	CTCTTC	1 cut(s)	1368
EarI	CTCTTC	1 cut(s)	1368
Eco105I	TACGTA	1 cut(s)	89
Eco130I	CCWWGG	2 cut(s)	956, 1703
Eco147I	AGGCCT	1 cut(s)	785
Eco24I	GRGCYC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	1302
Eco88I	CYCGRG	1 cut(s)	701
EcoNI	CCTNNNNNAGG	1 cut(s)	1284
EcoRII	CCWGG	1 cut(s)	1483
EcoT14I	CCWWGG	2 cut(s)	956, 1703
EcoT22I	ATGCAT	4 cut(s)	356, 499, 647, 1226
EcoT38I	GRGCYC	1 cut(s)	403
ErhI	CCWWGG	2 cut(s)	956, 1703
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	7 cut(s)	188, 202, 354, 567, 896, 1127, 1567
FaqI	GGGAC	5 cut(s)	315, 684, 825, 1509, 1584
FatI	CATG	7 cut(s)	184, 198, 350, 563, 892, 1123, 1563
FauNDI	CATATG	2 cut(s)	272, 1340
FbaI	TGATCA	4 cut(s)	181, 187, 505, 1560
FblI	GTMKAC	1 cut(s)	1216
Fnu4HI	GCNGC	7 cut(s)	622, 712, 1152, 1155, 1291, 1399, 1489
FokI	GGATG	3 cut(s)	502, 899, 1489
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	7 cut(s)	622, 712, 1152, 1155, 1291, 1399, 1489
FspBI	CTAG	7 cut(s)	237, 258, 437, 725, 1304, 1317, 1329
GlaI	GCGC	2 cut(s)	1620, 1687
GluI	GCNGC	7 cut(s)	622, 712, 1152, 1155, 1291, 1399, 1489
GsaI	CCCAGC	1 cut(s)	1495
GsuI	CTGGAG	2 cut(s)	692, 1193
HaeII	RGCGCY	1 cut(s)	1622
HaeIII	GGCC	2 cut(s)	457, 785
HapII	CCGG	6 cut(s)	106, 429, 454, 707, 881, 1531
HhaI	GCGC	2 cut(s)	1621, 1688
Hin1I	GRCGYC	1 cut(s)	1188
Hin1II	CATG	7 cut(s)	188, 202, 354, 567, 896, 1127, 1567
Hin6I	GCGC	2 cut(s)	1619, 1686
HinP1I	GCGC	2 cut(s)	1619, 1686
HincII	GTYRAC	2 cut(s)	874, 1217
HindII	GTYRAC	2 cut(s)	874, 1217
HinfI	GANTC	9 cut(s)	42, 308, 482, 599, 1178, 1238, 1376, 1642, 1652
HpaII	CCGG	6 cut(s)	106, 429, 454, 707, 881, 1531
HphI	GGTGA	4 cut(s)	8, 1019, 1033, 1453
Hpy166II	GTNNAC	5 cut(s)	92, 361, 874, 1098, 1217
Hpy188I	TCNGA	8 cut(s)	144, 468, 510, 594, 814, 990, 1573, 1647
Hpy188III	TCNNGA	7 cut(s)	185, 191, 701, 754, 767, 881, 1172
Hpy8I	GTNNAC	5 cut(s)	92, 361, 874, 1098, 1217
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	4 cut(s)	473, 775, 853, 1018
HpyCH4III	ACNGT	9 cut(s)	178, 740, 839, 1142, 1214, 1412, 1500, 1598, 1661
HpyCH4IV	ACGT	4 cut(s)	88, 1188, 1260, 1265
HpyF10VI	GCNNNNNNNGC	7 cut(s)	136, 398, 642, 730, 945, 1065, 1685
HpyF3I	CTNAG	3 cut(s)	101, 135, 593
HpySE526I	ACGT	4 cut(s)	88, 1188, 1260, 1265
Hsp92I	GRCGYC	1 cut(s)	1188
Hsp92II	CATG	7 cut(s)	188, 202, 354, 567, 896, 1127, 1567
HspAI	GCGC	2 cut(s)	1619, 1686
Kpn2I	TCCGGA	1 cut(s)	880
KroI	GCCGGC	1 cut(s)	453
KroNI	GCCGGC	1 cut(s)	455
Ksp22I	TGATCA	4 cut(s)	181, 187, 505, 1560
Kzo9I	GATC	9 cut(s)	181, 187, 193, 505, 877, 1345, 1480, 1560, 1568
LmnI	GCTCC	3 cut(s)	384, 1027, 1452
Lsp1109I	GCAGC	7 cut(s)	633, 698, 1141, 1163, 1277, 1410, 1475
LweI	GCATC	2 cut(s)	598, 654
MaeI	CTAG	7 cut(s)	237, 258, 437, 725, 1304, 1317, 1329
MaeII	ACGT	4 cut(s)	88, 1188, 1260, 1265
MaeIII	GTNAC	7 cut(s)	596, 682, 1133, 1261, 1459, 1631, 1724
MalI	GATC	9 cut(s)	183, 189, 195, 507, 879, 1347, 1482, 1562, 1570
MbiI	CCGCTC	1 cut(s)	1679
MboI	GATC	9 cut(s)	181, 187, 193, 505, 877, 1345, 1480, 1560, 1568
MboII	GAAGA	7 cut(s)	19, 205, 222, 317, 513, 1022, 1385
MflI	RGATCY	1 cut(s)	1568
MhlI	GDGCHC	5 cut(s)	403, 1061, 1100, 1280, 1478
MlyI	GAGTC	6 cut(s)	36, 302, 593, 1172, 1385, 1661
MmeI	TCCRAC	2 cut(s)	129, 792
Mph1103I	ATGCAT	4 cut(s)	356, 499, 647, 1226
MroI	TCCGGA	1 cut(s)	880
MroNI	GCCGGC	1 cut(s)	453
MroXI	GAANNNNTTC	1 cut(s)	1589
MseI	TTAA	6 cut(s)	288, 1107, 1230, 1356, 1428, 1719
MslI	CAYNNNNRTG	1 cut(s)	594
MspA1I	CMGCKG	1 cut(s)	1154
MspCI	CTTAAG	1 cut(s)	287
MspI	CCGG	6 cut(s)	106, 429, 454, 707, 881, 1531
MspR9I	CCNGG	2 cut(s)	708, 1485
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	1 cut(s)	1485
MwoI	GCNNNNNNNGC	7 cut(s)	136, 398, 642, 730, 945, 1065, 1685
NaeI	GCCGGC	1 cut(s)	455
NciI	CCSGG	1 cut(s)	708
NdeI	CATATG	2 cut(s)	272, 1340
NdeII	GATC	9 cut(s)	181, 187, 193, 505, 877, 1345, 1480, 1560, 1568
NgoMIV	GCCGGC	1 cut(s)	453
NlaIII	CATG	7 cut(s)	188, 202, 354, 567, 896, 1127, 1567
NlaIV	GGNNCC	5 cut(s)	58, 532, 954, 1570, 1701
NmeAIII	GCCGAG	2 cut(s)	836, 1595
NmuCI	GTSAC	6 cut(s)	596, 682, 1261, 1459, 1631, 1724
NsiI	ATGCAT	4 cut(s)	356, 499, 647, 1226
NspI	RCATGY	2 cut(s)	567, 1127
NspV	TTCGAA	1 cut(s)	1236
PaeI	GCATGC	1 cut(s)	1127
PagI	TCATGA	1 cut(s)	184
PaqCI	CACCTGC	1 cut(s)	1104
PceI	AGGCCT	1 cut(s)	785
PciI	ACATGT	1 cut(s)	563
PcsI	WCGNNNNNNNCGW	2 cut(s)	1257, 1524
PctI	GAATGC	1 cut(s)	499
PdiI	GCCGGC	1 cut(s)	455
PdmI	GAANNNNTTC	1 cut(s)	1589
PfeI	GAWTC	3 cut(s)	482, 1238, 1642
PflFI	GACNNNGTC	2 cut(s)	1259, 1457
PinAI	ACCGGT	1 cut(s)	1530
PkrI	GCNGC	7 cut(s)	623, 713, 1153, 1156, 1292, 1400, 1490
PleI	GAGTC	6 cut(s)	36, 302, 593, 1172, 1384, 1660
PpsI	GAGTC	6 cut(s)	36, 302, 593, 1172, 1384, 1660
Ppu21I	YACGTR	1 cut(s)	89
PscI	ACATGT	1 cut(s)	563
Psp6I	CCWGG	1 cut(s)	1483
PspFI	CCCAGC	1 cut(s)	1491
PspGI	CCWGG	1 cut(s)	1483
PspN4I	GGNNCC	5 cut(s)	58, 532, 954, 1570, 1701
PsrI	GAACNNNNNNTAC	2 cut(s)	1577, 1609
PstI	CTGCAG	3 cut(s)	716, 735, 1295
PstNI	CAGNNNCTG	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	1568
PsyI	GACNNNGTC	2 cut(s)	1259, 1457
PvuII	CAGCTG	1 cut(s)	1154
RsaI	GTAC	6 cut(s)	241, 265, 346, 553, 737, 1333
RsaNI	GTAC	6 cut(s)	240, 264, 345, 552, 736, 1332
RseI	CAYNNNNRTG	1 cut(s)	594
SalI	GTCGAC	1 cut(s)	1215
SaqAI	TTAA	6 cut(s)	288, 1107, 1230, 1356, 1428, 1719
SatI	GCNGC	7 cut(s)	622, 712, 1152, 1155, 1291, 1399, 1489
Sau3AI	GATC	9 cut(s)	181, 187, 193, 505, 877, 1345, 1480, 1560, 1568
ScaI	AGTACT	4 cut(s)	241, 265, 737, 1333
SchI	GAGTC	6 cut(s)	36, 302, 593, 1172, 1385, 1661
ScrFI	CCNGG	2 cut(s)	708, 1485
SduI	GDGCHC	5 cut(s)	403, 1061, 1100, 1280, 1478
SfaNI	GCATC	2 cut(s)	598, 654
SfcI	CTRYAG	3 cut(s)	712, 731, 1291
SfuI	TTCGAA	1 cut(s)	1236
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	2 cut(s)	44, 287
SmoI	CTYRAG	2 cut(s)	44, 287
SnaBI	TACGTA	1 cut(s)	89
SpeI	ACTAGT	1 cut(s)	1328
SphI	GCATGC	1 cut(s)	1127
SseBI	AGGCCT	1 cut(s)	785
SsiI	CCGC	3 cut(s)	234, 1367, 1679
SspMI	CTAG	7 cut(s)	237, 258, 437, 725, 1304, 1317, 1329
StuI	AGGCCT	1 cut(s)	785
StyD4I	CCNGG	2 cut(s)	706, 1483
StyI	CCWWGG	2 cut(s)	956, 1703
TaaI	ACNGT	9 cut(s)	178, 740, 839, 1142, 1214, 1412, 1500, 1598, 1661
TaiI	ACGT	4 cut(s)	91, 1191, 1263, 1268
TaqI	TCGA	6 cut(s)	303, 315, 1216, 1236, 1251, 1442
TatI	WGTACW	5 cut(s)	239, 263, 344, 735, 1331
TfiI	GAWTC	3 cut(s)	482, 1238, 1642
Tru1I	TTAA	6 cut(s)	288, 1107, 1230, 1356, 1428, 1719
Tru9I	TTAA	6 cut(s)	288, 1107, 1230, 1356, 1428, 1719
TscAI	CASTG	5 cut(s)	867, 1300, 1424, 1664, 1673
TseFI	GTSAC	6 cut(s)	596, 682, 1261, 1459, 1631, 1724
TseI	GCWGC	7 cut(s)	621, 711, 1151, 1154, 1290, 1398, 1488
Tsp45I	GTSAC	6 cut(s)	596, 682, 1261, 1459, 1631, 1724
TspDTI	ATGAA	8 cut(s)	20, 38, 215, 259, 506, 1157, 1327, 1598
TspGWI	ACGGA	2 cut(s)	114, 980
TspRI	CASTG	5 cut(s)	867, 1300, 1424, 1664, 1673
Tth111I	GACNNNGTC	2 cut(s)	1259, 1457
Vha464I	CTTAAG	1 cut(s)	287
VneI	GTGCAC	1 cut(s)	1096
XagI	CCTNNNNNAGG	1 cut(s)	1284
XapI	RAATTY	1 cut(s)	1715
XceI	RCATGY	2 cut(s)	567, 1127
XmiI	GTMKAC	1 cut(s)	1216
XmnI	GAANNNNTTC	1 cut(s)	1589
XspI	CTAG	7 cut(s)	237, 258, 437, 725, 1304, 1317, 1329
ZraI	GACGTC	1 cut(s)	1189
ZrmI	AGTACT	4 cut(s)	241, 265, 737, 1333
Zsp2I	ATGCAT	4 cut(s)	356, 499, 647, 1226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.