Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Forward (+)

5392692 .. 5394403

Gene Structure 1712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGGAGTATTAGCCCCTGGGTACTGTCGTTCAATCCTCCCTAATGACATATTTGCTAGGTGGATTCACACCTTATTTGATCAAAATGGGAAATATTATAATCTTAAAATACTTTTATATGTGATGTGTATTACGCCAAGTCATCTGGAAGACTCCTTTGATGTCAAGGGTAGCAACCATTTTTATTGTCGGCACTGCATTGTGAATTTTGTAGTGTCCAAGCTCCAAGACAATGTTACATCCATTGTGTGCCCAGAAAGAGGCCGTATAGGAGTCTTAAACCCCGAGTGCTGTCGCACTATCCTCCCAGATAGCATCTTTGATAGCTGGGTATTCTTCTTTGATGAAAATGTGACTGCAATAATACTATTACTTTTACATAGCTGCAATCATTTTTACCGTCGCCAATGCATTGTTGGTTTCATATCATCCAAGCTCCAGGAGAATGTGACCTCCATTAAGTATCCTGAACCAGGCTGTAGGGGAGTGTTGGATCTTGTGTACTGTCGTCCAATTCTTCCAAACAAAGTCTTTGATTTGTGGGTTCATGCCTTATGGAATCAAAACGAGCAATCTGCTAATTTTGAAATTAATAATGCTAGTACTTTCATATGTGAATTCTGTGTTGTGCCAGTTGGCCTCGAAGACTCATTTAATGTCAAGGGTTGCAGCCATTTCTACTGTCAGCAATGCATTGTTAATTTTGTAGTGTCCAAGCTCCAAGAGAATGTGACATCCATTGAGTGCCCTGAACCAGGCTGCCAGGAAGTGTTGGACCCCGAGTGCCATCGTCCAATCCTCCCTAATGATGCCCTTCTACTGTCCTTTCAAGGATTGCATGGCAATGTTGAATTGTTGATTGATGATAATAAGGTTGTACAGAAATCACAACGTTCATATTGTAAGAAAGTGTTCTTTGCACAGTGTAAGGTTCCTTGGCATGCGAAGATCGACTGTGTGGAGTTTCAGAAGTTGAATGAAGATGAGAGGGGAAGGGAAGATATCACTGAGGAACCTCGCAGAAGGAAAAATGGAGGAGGTGTCCAAGTTGCCAATATTATGTTGCAAAGAAAAGTGGCTGCTCATACATCAAATGCAGGGTCAACAGTGTCGATTTGCTTTCTGCTACCATTGTGGAATAGCAGCTCCCTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

386

Amino Acids

43.87

Weight (kDa)

6.31

Isoelectric Point (pI)

52.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	99
AclI	AACGTT	1 cut(s)	892
AclWI	GGATC	1 cut(s)	501
AcsI	RAATTY	2 cut(s)	205, 617
AfaI	GTAC	4 cut(s)	23, 503, 604, 879
AfiI	CCNNNNNNNGG	3 cut(s)	260, 473, 755
AgsI	TTSAA	5 cut(s)	33, 587, 830, 851, 976
AjnI	CCWGG	5 cut(s)	16, 438, 472, 754, 762
AluBI	AGCT	6 cut(s)	223, 327, 384, 436, 718, 1146
AluI	AGCT	6 cut(s)	223, 327, 384, 436, 718, 1146
AlwI	GGATC	1 cut(s)	501
Ama87I	CYCGRG	2 cut(s)	284, 779
AoxI	GGCC	2 cut(s)	262, 637
ApeKI	GCWGC	5 cut(s)	384, 669, 759, 1079, 1143
ApoI	RAATTY	2 cut(s)	205, 617
ArsI	GACNNNNNNTTYG	2 cut(s)	1085, 1117
AseI	ATTAAT	1 cut(s)	591
Asp700I	GAANNNNTTC	1 cut(s)	911
AspS9I	GGNCC	1 cut(s)	775
AvaI	CYCGRG	2 cut(s)	284, 779
AvaII	GGWCC	1 cut(s)	775
BaeGI	GKGCMC	2 cut(s)	254, 749
BaeI	ACNNNNGTAYC	2 cut(s)	13, 46
BbsI	GAAGAC	2 cut(s)	156, 651
BbvI	GCAGC	4 cut(s)	371, 681, 746, 1066
BccI	CCATC	1 cut(s)	795
BceAI	ACGGC	1 cut(s)	249
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BciT130I	CCWGG	5 cut(s)	18, 440, 474, 756, 764
BciVI	GTATCC	1 cut(s)	474
BclI	TGATCA	1 cut(s)	79
BfaI	CTAG	2 cut(s)	57, 600
BfmI	CTRYAG	1 cut(s)	478
BfuI	GTATCC	1 cut(s)	474
BisI	GCNGC	5 cut(s)	385, 670, 760, 1080, 1144
BlsI	GCNGC	5 cut(s)	386, 671, 761, 1081, 1145
BmcAI	AGTACT	1 cut(s)	604
Bme1390I	CCNGG	5 cut(s)	18, 440, 474, 756, 764
Bme18I	GGWCC	1 cut(s)	775
BmeT110I	CYCGRG	2 cut(s)	284, 779
BmgT120I	GGNCC	1 cut(s)	775
BmiI	GGNNCC	3 cut(s)	777, 933, 1014
BmrFI	CCNGG	5 cut(s)	18, 440, 474, 756, 764
BmsI	GCATC	2 cut(s)	324, 799
BpiI	GAAGAC	2 cut(s)	156, 651
BpmI	CTGGAG	1 cut(s)	422
BsaJI	CCNNGG	3 cut(s)	16, 17, 935
BsaXI	ACNNNNNCTCC	2 cut(s)	1026, 1056
Bsc4I	CCNNNNNNNGG	3 cut(s)	260, 473, 755
Bse1I	ACTGG	1 cut(s)	632
Bse3DI	GCAATG	2 cut(s)	695, 850
BseBI	CCWGG	5 cut(s)	18, 440, 474, 756, 764
BseDI	CCNNGG	3 cut(s)	16, 17, 935
BseGI	GGATG	3 cut(s)	239, 428, 734
BseLI	CCNNNNNNNGG	3 cut(s)	260, 473, 755
BseMI	GCAATG	2 cut(s)	695, 850
BseMII	CTCAG	1 cut(s)	999
BseNI	ACTGG	1 cut(s)	632
BseRI	GAGGAG	1 cut(s)	1050
BseSI	GKGCMC	2 cut(s)	254, 749
BseXI	GCAGC	4 cut(s)	371, 681, 746, 1066
BseYI	CCCAGC	1 cut(s)	327
BshFI	GGCC	2 cut(s)	264, 639
BsiHKCI	CYCGRG	2 cut(s)	284, 779
BslI	CCNNNNNNNGG	3 cut(s)	260, 473, 755
BsnI	GGCC	2 cut(s)	264, 639
BsoBI	CYCGRG	2 cut(s)	284, 779
Bsp1286I	GDGCHC	2 cut(s)	254, 749
Bsp1407I	TGTACA	1 cut(s)	877
Bsp143I	GATC	3 cut(s)	79, 493, 948
BspANI	GGCC	2 cut(s)	264, 639
BspCNI	CTCAG	1 cut(s)	1000
BspLI	GGNNCC	3 cut(s)	777, 933, 1014
BspPI	GGATC	1 cut(s)	501
BsrDI	GCAATG	2 cut(s)	695, 850
BsrGI	TGTACA	1 cut(s)	877
BsrI	ACTGG	1 cut(s)	632
BssECI	CCNNGG	3 cut(s)	16, 17, 935
BssMI	GATC	3 cut(s)	79, 493, 948
BssT1I	CCWWGG	1 cut(s)	935
Bst2UI	CCWGG	5 cut(s)	18, 440, 474, 756, 764
Bst4CI	ACNGT	8 cut(s)	26, 401, 506, 683, 822, 924, 956, 1108
BstAUI	TGTACA	1 cut(s)	877
BstC8I	GCNNGC	1 cut(s)	942
BstDEI	CTNAG	1 cut(s)	1008
BstENI	CCTNNNNNAGG	2 cut(s)	471, 753
BstF5I	GGATG	3 cut(s)	239, 428, 734
BstKTI	GATC	3 cut(s)	82, 496, 951
BstMBI	GATC	3 cut(s)	79, 493, 948
BstNI	CCWGG	5 cut(s)	18, 440, 474, 756, 764
BstNSI	RCATGY	1 cut(s)	944
BstSCI	CCNGG	5 cut(s)	16, 438, 472, 754, 762
BstSFI	CTRYAG	1 cut(s)	478
BstSLI	GKGCMC	2 cut(s)	254, 749
BstV1I	GCAGC	4 cut(s)	371, 681, 746, 1066
BstV2I	GAAGAC	2 cut(s)	156, 651
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
BsuI	GTATCC	1 cut(s)	474
BsuRI	GGCC	2 cut(s)	264, 639
BtsCI	GGATG	3 cut(s)	239, 428, 734
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	4 cut(s)	193, 929, 1005, 1113
Cac8I	GCNNGC	1 cut(s)	942
Cfr13I	GGNCC	1 cut(s)	775
Csp6I	GTAC	4 cut(s)	22, 502, 603, 878
CviAII	CATG	3 cut(s)	548, 839, 941
CviQI	GTAC	4 cut(s)	22, 502, 603, 878
DdeI	CTNAG	1 cut(s)	1008
DpnI	GATC	3 cut(s)	81, 495, 950
DpnII	GATC	3 cut(s)	79, 493, 948
Eco130I	CCWWGG	1 cut(s)	935
Eco32I	GATATC	1 cut(s)	1003
Eco47I	GGWCC	1 cut(s)	775
Eco88I	CYCGRG	2 cut(s)	284, 779
EcoNI	CCTNNNNNAGG	2 cut(s)	471, 753
EcoRI	GAATTC	1 cut(s)	617
EcoRII	CCWGG	5 cut(s)	16, 438, 472, 754, 762
EcoRV	GATATC	1 cut(s)	1003
EcoT14I	CCWWGG	1 cut(s)	935
EcoT22I	ATGCAT	2 cut(s)	413, 695
ErhI	CCWWGG	1 cut(s)	935
FaeI	CATG	3 cut(s)	551, 842, 944
FatI	CATG	3 cut(s)	547, 838, 940
FauNDI	CATATG	1 cut(s)	611
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	5 cut(s)	385, 670, 760, 1080, 1144
FokI	GGATG	3 cut(s)	226, 415, 721
Fsp4HI	GCNGC	5 cut(s)	385, 670, 760, 1080, 1144
FspBI	CTAG	2 cut(s)	57, 600
GluI	GCNGC	5 cut(s)	385, 670, 760, 1080, 1144
GsaI	CCCAGC	1 cut(s)	331
GsuI	CTGGAG	1 cut(s)	422
HaeIII	GGCC	2 cut(s)	264, 639
Hin1II	CATG	3 cut(s)	551, 842, 944
HincII	GTYRAC	1 cut(s)	1104
HindII	GTYRAC	1 cut(s)	1104
HinfI	GANTC	5 cut(s)	64, 152, 273, 559, 647
Hpy166II	GTNNAC	2 cut(s)	502, 1104
Hpy188I	TCNGA	1 cut(s)	969
Hpy188III	TCNNGA	2 cut(s)	146, 467
Hpy8I	GTNNAC	2 cut(s)	502, 1104
Hpy99I	CGWCG	1 cut(s)	405
HpyAV	CCTTC	3 cut(s)	824, 987, 1017
HpyCH4III	ACNGT	8 cut(s)	26, 401, 506, 683, 822, 924, 956, 1108
HpyCH4IV	ACGT	1 cut(s)	892
HpyF3I	CTNAG	1 cut(s)	1008
HpySE526I	ACGT	1 cut(s)	892
Hsp92II	CATG	3 cut(s)	551, 842, 944
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	79, 493, 948
LmnI	GCTCC	4 cut(s)	228, 441, 723, 1151
Lsp1109I	GCAGC	4 cut(s)	371, 681, 746, 1066
LweI	GCATC	2 cut(s)	324, 799
MaeI	CTAG	2 cut(s)	57, 600
MaeII	ACGT	1 cut(s)	892
MaeIII	GTNAC	4 cut(s)	235, 352, 448, 730
MalI	GATC	3 cut(s)	81, 495, 950
MboI	GATC	3 cut(s)	79, 493, 948
MboII	GAAGA	7 cut(s)	161, 328, 509, 656, 958, 992, 1010
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	2 cut(s)	254, 749
MluCI	AATT	7 cut(s)	205, 513, 580, 588, 617, 700, 851
MlyI	GAGTC	3 cut(s)	146, 282, 641
MmeI	TCCRAC	2 cut(s)	471, 753
Mph1103I	ATGCAT	2 cut(s)	413, 695
MroXI	GAANNNNTTC	1 cut(s)	911
MseI	TTAA	7 cut(s)	105, 278, 459, 591, 654, 699, 1152
MslI	CAYNNNNRTG	1 cut(s)	843
MspR9I	CCNGG	5 cut(s)	18, 440, 474, 756, 764
MvaI	CCWGG	5 cut(s)	18, 440, 474, 756, 764
NdeI	CATATG	1 cut(s)	611
NdeII	GATC	3 cut(s)	79, 493, 948
NlaIII	CATG	3 cut(s)	551, 842, 944
NlaIV	GGNNCC	3 cut(s)	777, 933, 1014
NmuCI	GTSAC	3 cut(s)	352, 448, 730
NsiI	ATGCAT	2 cut(s)	413, 695
NspI	RCATGY	1 cut(s)	944
PaeI	GCATGC	1 cut(s)	944
PasI	CCCWGGG	1 cut(s)	17
PdmI	GAANNNNTTC	1 cut(s)	911
PfeI	GAWTC	2 cut(s)	64, 559
PfoI	TCCNGGA	1 cut(s)	438
PkrI	GCNGC	5 cut(s)	386, 671, 761, 1081, 1145
PleI	GAGTC	3 cut(s)	146, 281, 641
PpsI	GAGTC	3 cut(s)	146, 281, 641
PshBI	ATTAAT	1 cut(s)	591
PsiI	TTATAA	1 cut(s)	99
Psp1406I	AACGTT	1 cut(s)	892
Psp6I	CCWGG	5 cut(s)	16, 438, 472, 754, 762
PspFI	CCCAGC	1 cut(s)	327
PspGI	CCWGG	5 cut(s)	16, 438, 472, 754, 762
PspN4I	GGNNCC	3 cut(s)	777, 933, 1014
PspPI	GGNCC	1 cut(s)	775
PsuI	RGATCY	1 cut(s)	493
RsaI	GTAC	4 cut(s)	23, 503, 604, 879
RsaNI	GTAC	4 cut(s)	22, 502, 603, 878
RseI	CAYNNNNRTG	1 cut(s)	843
SaqAI	TTAA	7 cut(s)	105, 278, 459, 591, 654, 699, 1152
SatI	GCNGC	5 cut(s)	385, 670, 760, 1080, 1144
Sau3AI	GATC	3 cut(s)	79, 493, 948
Sau96I	GGNCC	1 cut(s)	775
ScaI	AGTACT	1 cut(s)	604
SchI	GAGTC	3 cut(s)	146, 282, 641
ScrFI	CCNGG	5 cut(s)	18, 440, 474, 756, 764
SduI	GDGCHC	2 cut(s)	254, 749
SfaNI	GCATC	2 cut(s)	324, 799
SfcI	CTRYAG	1 cut(s)	478
SinI	GGWCC	1 cut(s)	775
SmiMI	CAYNNNNRTG	1 cut(s)	843
SphI	GCATGC	1 cut(s)	944
Sse9I	AATT	7 cut(s)	205, 513, 580, 588, 617, 700, 851
SspI	AATATT	2 cut(s)	95, 1057
SspMI	CTAG	2 cut(s)	57, 600
StyD4I	CCNGG	5 cut(s)	16, 438, 472, 754, 762
StyI	CCWWGG	1 cut(s)	935
TaaI	ACNGT	8 cut(s)	26, 401, 506, 683, 822, 924, 956, 1108
TaiI	ACGT	1 cut(s)	895
TaqI	TCGA	3 cut(s)	642, 951, 1112
TasI	AATT	7 cut(s)	205, 513, 580, 588, 617, 700, 851
TatI	WGTACW	3 cut(s)	501, 602, 877
TfiI	GAWTC	2 cut(s)	64, 559
Tru1I	TTAA	7 cut(s)	105, 278, 459, 591, 654, 699, 1152
Tru9I	TTAA	7 cut(s)	105, 278, 459, 591, 654, 699, 1152
TscAI	CASTG	4 cut(s)	200, 929, 1012, 1113
TseFI	GTSAC	3 cut(s)	352, 448, 730
TseI	GCWGC	5 cut(s)	384, 669, 759, 1079, 1143
Tsp45I	GTSAC	3 cut(s)	352, 448, 730
TspDTI	ATGAA	6 cut(s)	360, 412, 536, 598, 885, 993
TspRI	CASTG	4 cut(s)	200, 929, 1012, 1113
VpaK11BI	GGWCC	1 cut(s)	775
VspI	ATTAAT	1 cut(s)	591
XagI	CCTNNNNNAGG	2 cut(s)	471, 753
XapI	RAATTY	2 cut(s)	205, 617
XceI	RCATGY	1 cut(s)	944
XcmI	CCANNNNNNNNNTGG	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	911
XspI	CTAG	2 cut(s)	57, 600
ZrmI	AGTACT	1 cut(s)	604
Zsp2I	ATGCAT	2 cut(s)	413, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.