Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Forward (+)

8268487 .. 8269637

Gene Structure 1151 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1103200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTGCCCCGTACAAGGCTGCGCCGGCTTGCTAGACCCCGACTACTGCCGTCCAATCCTCCCAGATGACATCTTTGATGGGTGGGGCAATGCTTTGTGTGAATCTGCACTCGTGGATGAGAGTGATGATATCTGTTCAACTTTTGTATGTGACTTCTGTGTTGAGCGAGTTGATCTAAAAGACTCGTTTAACATTAAGGGTTGCTCCCATTTTTACCGTCAATACTGCATTGTCAAATTCGTAGCATCCAAGCTTGATGACAATGTATCTTCCATTATATGCCCTGCACAAGGCTGCACCGGCTCATTAGACCTTGACTACTGTCGTCCTATCCTCCCAACCGATGTCTTTGATAGGTGGGGCAAGGCGATATATGAATCTGTGGTTATCGGGCCTCAGAAGAAGAATCACTTATACTGTCCCTTTGCCACGTGCTCCGCGCTGTTGATCCACGAAGGGCCAGAGGATACCAATCAGGCTCGGTGTCCTCATTGCAAGAGAGAGTTTTGTGCGAAGTGTGAGGCTCCTTGGCATACCGAATTCAATTGCGCCATGTTTCAGAAACTGAGAGATAAGGGTGAAGACAAGATGCTGAAAGAACTTGCCAAGAATAAGAACTGGAGGAGGTGCCCACGTTGCAATTACTATGTTGAAAGAATAGATGGGTGCAGCTACATGAAATGCAGGTGCGGATTTGCTTTCTGTTACAGTTGTGGAATTCAAGCTGTCGAACATACCCGTTATTGTCAAAGCTGTAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

255

Amino Acids

28.97

Weight (kDa)

6.3

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	133 - 183	3.4e-11	IBR domain, a half RING-finger domain
IBR	PF01485	194 - 245	2.5e-07	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	675
Acc36I	ACCTGC	1 cut(s)	675
AccB1I	GGYRCC	1 cut(s)	627
AccII	CGCG	1 cut(s)	440
AciI	CCGC	2 cut(s)	438, 690
AclWI	GGATC	1 cut(s)	442
AcsI	RAATTY	3 cut(s)	236, 539, 717
AcvI	CACGTG	1 cut(s)	432
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	2 cut(s)	14, 290
AgsI	TTSAA	4 cut(s)	138, 544, 653, 722
AluBI	AGCT	4 cut(s)	253, 672, 725, 753
AluI	AGCT	4 cut(s)	253, 672, 725, 753
Alw21I	GWGCWC	1 cut(s)	437
AlwI	GGATC	1 cut(s)	442
AlwNI	CAGNNNCTG	1 cut(s)	565
AoxI	GGCC	2 cut(s)	392, 458
ApeKI	GCWGC	3 cut(s)	18, 294, 669
ApoI	RAATTY	3 cut(s)	236, 539, 717
AspLEI	GCGC	3 cut(s)	23, 442, 551
AspS9I	GGNCC	2 cut(s)	392, 458
AsuHPI	GGTGA	1 cut(s)	590
BaeGI	GKGCMC	2 cut(s)	8, 632
BanI	GGYRCC	1 cut(s)	627
BauI	CACGAG	1 cut(s)	110
BbrPI	CACGTG	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	437
BbvI	GCAGC	3 cut(s)	5, 281, 681
BccI	CCATC	2 cut(s)	71, 656
BceAI	ACGGC	1 cut(s)	33
BciVI	GTATCC	1 cut(s)	460
BfaI	CTAG	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	675
BfuI	GTATCC	1 cut(s)	460
BisI	GCNGC	3 cut(s)	19, 295, 670
BlsI	GCNGC	3 cut(s)	20, 296, 671
BmgT120I	GGNCC	2 cut(s)	392, 458
BmiI	GGNNCC	2 cut(s)	525, 629
BmsI	GCATC	2 cut(s)	254, 579
BoxI	GACNNNNGTC	1 cut(s)	321
BpiI	GAAGAC	1 cut(s)	588
BpmI	CTGGAG	1 cut(s)	640
BsaAI	YACGTR	1 cut(s)	432
BsaBI	GATNNNNATC	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	527
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 290
Bse118I	RCCGGY	2 cut(s)	23, 299
Bse1I	ACTGG	1 cut(s)	623
Bse3DI	GCAATG	2 cut(s)	94, 490
Bse8I	GATNNNNATC	1 cut(s)	471
BseDI	CCNNGG	1 cut(s)	527
BseGI	GGATG	2 cut(s)	121, 245
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	2 cut(s)	14, 290
BseMI	GCAATG	2 cut(s)	94, 490
BseMII	CTCAG	2 cut(s)	410, 557
BseNI	ACTGG	1 cut(s)	623
BseRI	GAGGAG	1 cut(s)	637
BseSI	GKGCMC	2 cut(s)	8, 632
BseXI	GCAGC	3 cut(s)	5, 281, 681
BsgI	GTGCAG	4 cut(s)	90, 270, 280, 688
Bsh1236I	CGCG	1 cut(s)	440
BshFI	GGCC	2 cut(s)	394, 460
BshNI	GGYRCC	1 cut(s)	627
BsiHKAI	GWGCWC	1 cut(s)	437
BsiSI	CCGG	2 cut(s)	24, 300
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	2 cut(s)	14, 290
BsmFI	GGGAC	1 cut(s)	405
BsnI	GGCC	2 cut(s)	394, 460
Bsp1286I	GDGCHC	3 cut(s)	8, 437, 632
Bsp143I	GATC	2 cut(s)	172, 447
BspACI	CCGC	2 cut(s)	438, 690
BspANI	GGCC	2 cut(s)	394, 460
BspCNI	CTCAG	2 cut(s)	409, 558
BspFNI	CGCG	1 cut(s)	440
BspLI	GGNNCC	2 cut(s)	525, 629
BspMI	ACCTGC	1 cut(s)	675
BspPI	GGATC	1 cut(s)	442
BspT107I	GGYRCC	1 cut(s)	627
BsrDI	GCAATG	2 cut(s)	94, 490
BsrFI	RCCGGY	2 cut(s)	23, 299
BsrI	ACTGG	1 cut(s)	623
BssAI	RCCGGY	2 cut(s)	23, 299
BssECI	CCNNGG	1 cut(s)	527
BssMI	GATC	2 cut(s)	172, 447
BssSI	CACGAG	1 cut(s)	110
BssT1I	CCWWGG	1 cut(s)	527
Bst2BI	CACGAG	1 cut(s)	110
Bst4CI	ACNGT	4 cut(s)	218, 323, 419, 710
BstBAI	YACGTR	1 cut(s)	432
BstC8I	GCNNGC	2 cut(s)	25, 29
BstDEI	CTNAG	2 cut(s)	396, 566
BstENI	CCTNNNNNAGG	1 cut(s)	288
BstF5I	GGATG	2 cut(s)	121, 245
BstFNI	CGCG	1 cut(s)	440
BstHHI	GCGC	3 cut(s)	23, 442, 551
BstKTI	GATC	2 cut(s)	175, 450
BstMBI	GATC	2 cut(s)	172, 447
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 300, 636
BstPAI	GACNNNNGTC	1 cut(s)	321
BstSLI	GKGCMC	2 cut(s)	8, 632
BstUI	CGCG	1 cut(s)	440
BstV1I	GCAGC	3 cut(s)	5, 281, 681
BstV2I	GAAGAC	1 cut(s)	588
BsuI	GTATCC	1 cut(s)	460
BsuRI	GGCC	2 cut(s)	394, 460
BtsCI	GGATG	2 cut(s)	121, 245
BveI	ACCTGC	1 cut(s)	675
Cac8I	GCNNGC	2 cut(s)	25, 29
CaiI	CAGNNNCTG	1 cut(s)	565
CfoI	GCGC	3 cut(s)	23, 442, 551
Cfr10I	RCCGGY	2 cut(s)	23, 299
Cfr13I	GGNCC	2 cut(s)	392, 458
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	2 cut(s)	553, 676
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	2 cut(s)	396, 566
DpnI	GATC	2 cut(s)	174, 449
DpnII	GATC	2 cut(s)	172, 447
Eco130I	CCWWGG	1 cut(s)	527
Eco32I	GATATC	1 cut(s)	130
Eco72I	CACGTG	1 cut(s)	432
EcoNI	CCTNNNNNAGG	1 cut(s)	288
EcoRI	GAATTC	2 cut(s)	539, 717
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	527
ErhI	CCWWGG	1 cut(s)	527
FaeI	CATG	2 cut(s)	556, 679
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	2 cut(s)	552, 675
Fnu4HI	GCNGC	3 cut(s)	19, 295, 670
FokI	GGATG	2 cut(s)	128, 232
Fsp4HI	GCNGC	3 cut(s)	19, 295, 670
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	3 cut(s)	22, 441, 550
GluI	GCNGC	3 cut(s)	19, 295, 670
GsuI	CTGGAG	1 cut(s)	640
HaeIII	GGCC	2 cut(s)	394, 460
HapII	CCGG	2 cut(s)	24, 300
HhaI	GCGC	3 cut(s)	23, 442, 551
Hin1II	CATG	2 cut(s)	556, 679
Hin6I	GCGC	3 cut(s)	21, 440, 549
HinP1I	GCGC	3 cut(s)	21, 440, 549
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	4 cut(s)	101, 182, 377, 406
HpaII	CCGG	2 cut(s)	24, 300
HphI	GGTGA	1 cut(s)	590
Hpy188I	TCNGA	2 cut(s)	399, 561
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	4 cut(s)	218, 323, 419, 710
HpyCH4IV	ACGT	2 cut(s)	431, 634
HpyCH4V	TGCA	8 cut(s)	107, 228, 287, 297, 495, 639, 669, 684
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 300, 636
HpyF3I	CTNAG	2 cut(s)	396, 566
HpySE526I	ACGT	2 cut(s)	431, 634
Hsp92II	CATG	2 cut(s)	556, 679
HspAI	GCGC	3 cut(s)	21, 440, 549
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	172, 447
LmnI	GCTCC	3 cut(s)	209, 440, 529
LpnPI	CCDG	8 cut(s)	37, 75, 297, 313, 461, 474, 604, 670
Lsp1109I	GCAGC	3 cut(s)	5, 281, 681
LweI	GCATC	2 cut(s)	254, 579
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	2 cut(s)	431, 634
MaeIII	GTNAC	2 cut(s)	149, 704
MalI	GATC	2 cut(s)	174, 449
MboI	GATC	2 cut(s)	172, 447
MboII	GAAGA	4 cut(s)	261, 412, 415, 593
MfeI	CAATTG	1 cut(s)	544
MhlI	GDGCHC	3 cut(s)	8, 437, 632
MluCI	AATT	5 cut(s)	236, 539, 544, 640, 717
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	8 cut(s)	68, 344, 405, 457, 498, 514, 615, 618
MroNI	GCCGGC	1 cut(s)	23
MseI	TTAA	2 cut(s)	189, 195
MspI	CCGG	2 cut(s)	24, 300
MunI	CAATTG	1 cut(s)	544
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	3 cut(s)	24, 300, 636
NaeI	GCCGGC	1 cut(s)	25
NdeII	GATC	2 cut(s)	172, 447
NgoMIV	GCCGGC	1 cut(s)	23
NlaIII	CATG	2 cut(s)	556, 679
NlaIV	GGNNCC	2 cut(s)	525, 629
NmuCI	GTSAC	1 cut(s)	149
PaqCI	CACCTGC	1 cut(s)	675
PdiI	GCCGGC	1 cut(s)	25
PfeI	GAWTC	3 cut(s)	101, 377, 406
PkrI	GCNGC	3 cut(s)	20, 296, 671
PleI	GAGTC	1 cut(s)	176
PmaCI	CACGTG	1 cut(s)	432
PmlI	CACGTG	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	176
Ppu21I	YACGTR	1 cut(s)	432
PshAI	GACNNNNGTC	1 cut(s)	321
PspCI	CACGTG	1 cut(s)	432
PspN4I	GGNNCC	2 cut(s)	525, 629
PspPI	GGNCC	2 cut(s)	392, 458
PstNI	CAGNNNCTG	1 cut(s)	565
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	189, 195
SatI	GCNGC	3 cut(s)	19, 295, 670
Sau3AI	GATC	2 cut(s)	172, 447
Sau96I	GGNCC	2 cut(s)	392, 458
SchI	GAGTC	1 cut(s)	176
SduI	GDGCHC	3 cut(s)	8, 437, 632
SfaNI	GCATC	2 cut(s)	254, 579
Sse9I	AATT	5 cut(s)	236, 539, 544, 640, 717
SsiI	CCGC	2 cut(s)	438, 690
SspMI	CTAG	1 cut(s)	32
StyI	CCWWGG	1 cut(s)	527
TaaI	ACNGT	4 cut(s)	218, 323, 419, 710
TaiI	ACGT	2 cut(s)	434, 637
TaqI	TCGA	1 cut(s)	729
TasI	AATT	5 cut(s)	236, 539, 544, 640, 717
TfiI	GAWTC	3 cut(s)	101, 377, 406
Tru1I	TTAA	2 cut(s)	189, 195
Tru9I	TTAA	2 cut(s)	189, 195
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	3 cut(s)	18, 294, 669
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	390, 692
XagI	CCTNNNNNAGG	1 cut(s)	288
XapI	RAATTY	3 cut(s)	236, 539, 717
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.