Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Reverse (-)

8242429 .. 8244333

Gene Structure 1905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016613

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGATGAAGAGAGAACAGTGTCGATCTCCTATAGAAACCATCCTCAACCCTAATTTGATCAAACCCAAACAGGAGGACACTATTCCCGCCCATGTTCCCTATATTGACACCCCACAAGAAGCTGTGATAATAGGCGACGACCCTCGCTGGCGACGAAATCTCTGTGCTTGTGAAGCAAACCAAGTTGGGGATGGAGAAATTAGGGTTTCTAGGGCACCCAAAAGGCTCAAAACTTTGGATGAAATTAGGGTTTGTATATCCAAACCCTCCAGCAGTAATAATGCTACTGCTGAAGTTGGTTCTTTTGTTTGCGAAATCTGCGTCGAGCCCAAGTCTGTTCTTGATTCATTTGGGATCAAAAACTGTAGCCATGCTTACTGTTCCGACTGTGTGGTCAGTTACGTGTCCTCCAAGCTTCAGGACAATGTCACCACCATTGGGTGCCCTGTTCCTGACTGCAGGGGATCCCTAGAGCCAGAGCACTGTCTTTCGATTCTCCCGCCGGAGTTGTTTCTCCGCTGGGGGAAGGCCTTGTGTGAGGCTCTGTTTGCGGATTCGGATGAATATTGCAGGATCTTCTACTGTCCATTTAAGGATTGCTCGGCAATGTTGATTGAGGATGGGGTTGAAGAGGTTGATCTTGTGAGGGAATCGGAGTGCCCACACTGCTGGAGGTTGTTCTGTGCTCGGTGTAGGATTCCGTGGCACGCGGATATCGATTGTGAGGAGTTTCAGGAGCTGAATAAGGATGAGAGGAGGAAAGAAGACTTCATGTTGATACAGCTTGCCAAGGATAAAAAGTGGAGAAGATGCCCCAAGTGTAGGTTCTATGTCGAACGATCGGAGGGTTGCAAGTTCATGAAGTGTAGGTGCAGAACAGCATTCTGCTACAGATGTGGGAGAATTTTAAGCAAGAATCATGGCCACTTTTGTCCCACCTGTGAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

317

Amino Acids

36.29

Weight (kDa)

6.41

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	191 - 241	1.8e-07	IBR domain, a half RING-finger domain
IBR	PF01485	255 - 303	5.5e-06	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	392
AccB1I	GGYRCC	2 cut(s)	214, 441
AccII	CGCG	1 cut(s)	710
AciI	CCGC	5 cut(s)	87, 500, 517, 551, 710
AclWI	GGATC	4 cut(s)	362, 459, 472, 581
AcoI	YGGCCR	1 cut(s)	922
AcsI	RAATTY	1 cut(s)	903
AcuI	CTGAAG	2 cut(s)	312, 401
AfiI	CCNNNNNNNGG	3 cut(s)	187, 438, 822
AflIII	ACRYGT	1 cut(s)	402
AgsI	TTSAA	1 cut(s)	629
AjuI	GAANNNNNNNTTGG	2 cut(s)	809, 841
AluBI	AGCT	4 cut(s)	122, 415, 739, 784
AluI	AGCT	4 cut(s)	122, 415, 739, 784
Alw21I	GWGCWC	2 cut(s)	483, 688
AlwI	GGATC	4 cut(s)	362, 459, 472, 581
AlwNI	CAGNNNCTG	1 cut(s)	739
AoxI	GGCC	3 cut(s)	528, 922, 945
ApoI	RAATTY	1 cut(s)	903
ArsI	GACNNNNNNTTYG	2 cut(s)	306, 338
AsuHPI	GGTGA	1 cut(s)	421
BaeGI	GKGCMC	3 cut(s)	217, 446, 662
BalI	TGGCCA	1 cut(s)	924
BamHI	GGATCC	1 cut(s)	464
BanI	GGYRCC	2 cut(s)	214, 441
BanII	GRGCYC	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	771
Bbv12I	GWGCWC	2 cut(s)	483, 688
BccI	CCATC	3 cut(s)	47, 185, 614
BclI	TGATCA	1 cut(s)	57
BfaI	CTAG	2 cut(s)	210, 470
BfmI	CTRYAG	4 cut(s)	30, 364, 457, 889
BmiI	GGNNCC	3 cut(s)	216, 443, 466
BmsI	GCATC	1 cut(s)	800
BpiI	GAAGAC	1 cut(s)	771
BpmI	CTGGAG	2 cut(s)	253, 691
Bsa29I	ATCGAT	1 cut(s)	717
BsaAI	YACGTR	1 cut(s)	403
BsaJI	CCNNGG	2 cut(s)	701, 789
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 438, 822
Bse3DI	GCAATG	1 cut(s)	612
BseCI	ATCGAT	1 cut(s)	717
BseDI	CCNNGG	2 cut(s)	701, 789
BseGI	GGATG	6 cut(s)	39, 196, 244, 565, 625, 754
BseLI	CCNNNNNNNGG	3 cut(s)	187, 438, 822
BseMI	GCAATG	1 cut(s)	612
BseRI	GAGGAG	2 cut(s)	740, 769
BseSI	GKGCMC	3 cut(s)	217, 446, 662
BseYI	CCCAGC	1 cut(s)	519
BsgI	GTGCAG	1 cut(s)	892
Bsh1236I	CGCG	1 cut(s)	710
Bsh1285I	CGRYCG	1 cut(s)	842
BshFI	GGCC	3 cut(s)	530, 924, 947
BshNI	GGYRCC	2 cut(s)	214, 441
BshVI	ATCGAT	1 cut(s)	717
BsiEI	CGRYCG	1 cut(s)	842
BsiHKAI	GWGCWC	2 cut(s)	483, 688
BsiSI	CCGG	1 cut(s)	503
BslFI	GGGAC	1 cut(s)	918
BslI	CCNNNNNNNGG	3 cut(s)	187, 438, 822
BsmFI	GGGAC	1 cut(s)	918
BsmI	GAATGC	1 cut(s)	881
BsnI	GGCC	3 cut(s)	530, 924, 947
Bsp1286I	GDGCHC	6 cut(s)	217, 330, 446, 483, 662, 688
Bsp143I	GATC	7 cut(s)	23, 57, 354, 464, 573, 637, 839
BspACI	CCGC	5 cut(s)	87, 500, 517, 551, 710
BspANI	GGCC	3 cut(s)	530, 924, 947
BspDI	ATCGAT	1 cut(s)	717
BspFNI	CGCG	1 cut(s)	710
BspHI	TCATGA	1 cut(s)	858
BspLI	GGNNCC	3 cut(s)	216, 443, 466
BspMAI	CTGCAG	1 cut(s)	461
BspPI	GGATC	4 cut(s)	362, 459, 472, 581
BspT107I	GGYRCC	2 cut(s)	214, 441
BsrDI	GCAATG	1 cut(s)	612
BssECI	CCNNGG	2 cut(s)	701, 789
BssMI	GATC	7 cut(s)	23, 57, 354, 464, 573, 637, 839
BssT1I	CCWWGG	1 cut(s)	789
Bst4CI	ACNGT	6 cut(s)	18, 365, 380, 389, 485, 584
Bst6I	CTCTTC	2 cut(s)	2, 624
BstBAI	YACGTR	1 cut(s)	403
BstC8I	GCNNGC	3 cut(s)	149, 708, 786
BstDSI	CCRYGG	1 cut(s)	701
BstF5I	GGATG	6 cut(s)	39, 196, 244, 565, 625, 754
BstFNI	CGCG	1 cut(s)	710
BstKTI	GATC	7 cut(s)	26, 60, 357, 467, 576, 640, 842
BstMBI	GATC	7 cut(s)	23, 57, 354, 464, 573, 637, 839
BstMCI	CGRYCG	1 cut(s)	842
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 318, 548, 666
BstSFI	CTRYAG	4 cut(s)	30, 364, 457, 889
BstSLI	GKGCMC	3 cut(s)	217, 446, 662
BstUI	CGCG	1 cut(s)	710
BstV2I	GAAGAC	1 cut(s)	771
BstX2I	RGATCY	2 cut(s)	464, 573
BstXI	CCANNNNNNTGG	1 cut(s)	669
BstYI	RGATCY	2 cut(s)	464, 573
Bsu15I	ATCGAT	1 cut(s)	717
BsuRI	GGCC	3 cut(s)	530, 924, 947
BsuTUI	ATCGAT	1 cut(s)	717
BtgI	CCRYGG	1 cut(s)	701
BtsCI	GGATG	6 cut(s)	39, 196, 244, 565, 625, 754
BtsI	GCAGTG	1 cut(s)	664
BtsIMutI	CAGTG	3 cut(s)	23, 481, 664
Cac8I	GCNNGC	3 cut(s)	149, 708, 786
CaiI	CAGNNNCTG	1 cut(s)	739
CciI	TCATGA	1 cut(s)	858
ClaI	ATCGAT	1 cut(s)	717
CseI	GACGC	1 cut(s)	310
CviAII	CATG	5 cut(s)	92, 371, 772, 859, 920
DpnI	GATC	7 cut(s)	25, 59, 356, 466, 575, 639, 841
DpnII	GATC	7 cut(s)	23, 57, 354, 464, 573, 637, 839
DrdI	GACNNNNNNGTC	1 cut(s)	392
DseDI	GACNNNNNNGTC	1 cut(s)	392
EaeI	YGGCCR	1 cut(s)	922
Eam1104I	CTCTTC	2 cut(s)	2, 624
EarI	CTCTTC	2 cut(s)	2, 624
Eco130I	CCWWGG	1 cut(s)	789
Eco147I	AGGCCT	2 cut(s)	530, 947
Eco24I	GRGCYC	1 cut(s)	330
Eco32I	GATATC	1 cut(s)	715
Eco57I	CTGAAG	2 cut(s)	312, 401
EcoRV	GATATC	1 cut(s)	715
EcoT14I	CCWWGG	1 cut(s)	789
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	789
FaeI	CATG	5 cut(s)	95, 374, 775, 862, 923
FaiI	YATR	9 cut(s)	32, 93, 102, 257, 372, 773, 831, 860, 921
FaqI	GGGAC	1 cut(s)	918
FatI	CATG	5 cut(s)	91, 370, 771, 858, 919
FauI	CCCGC	2 cut(s)	94, 507
FbaI	TGATCA	1 cut(s)	57
FokI	GGATG	6 cut(s)	26, 203, 251, 572, 632, 761
FriOI	GRGCYC	1 cut(s)	330
FspBI	CTAG	2 cut(s)	210, 470
GsaI	CCCAGC	1 cut(s)	523
GsuI	CTGGAG	2 cut(s)	253, 691
HaeIII	GGCC	3 cut(s)	530, 924, 947
HapII	CCGG	1 cut(s)	503
HgaI	GACGC	1 cut(s)	310
Hin1II	CATG	5 cut(s)	95, 374, 775, 862, 923
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	6 cut(s)	344, 493, 554, 650, 697, 916
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	1 cut(s)	421
Hpy188I	TCNGA	4 cut(s)	385, 559, 655, 844
Hpy188III	TCNNGA	5 cut(s)	341, 419, 452, 734, 859
Hpy99I	CGWCG	3 cut(s)	140, 156, 326
HpyAV	CCTTC	1 cut(s)	520
HpyCH4III	ACNGT	6 cut(s)	18, 365, 380, 389, 485, 584
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	4 cut(s)	459, 570, 852, 873
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 318, 548, 666
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	5 cut(s)	95, 374, 775, 862, 923
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	7 cut(s)	23, 57, 354, 464, 573, 637, 839
LmnI	GCTCC	1 cut(s)	736
LweI	GCATC	1 cut(s)	800
MaeI	CTAG	2 cut(s)	210, 470
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	2 cut(s)	398, 427
MalI	GATC	7 cut(s)	25, 59, 356, 466, 575, 639, 841
MboI	GATC	7 cut(s)	23, 57, 354, 464, 573, 637, 839
MboII	GAAGA	5 cut(s)	19, 568, 641, 776, 819
MflI	RGATCY	2 cut(s)	464, 573
MhlI	GDGCHC	6 cut(s)	217, 330, 446, 483, 662, 688
MlsI	TGGCCA	1 cut(s)	924
MluCI	AATT	4 cut(s)	52, 198, 243, 903
MluNI	TGGCCA	1 cut(s)	924
MmeI	TCCRAC	1 cut(s)	408
Mox20I	TGGCCA	1 cut(s)	924
MscI	TGGCCA	1 cut(s)	924
MseI	TTAA	2 cut(s)	591, 908
Msp20I	TGGCCA	1 cut(s)	924
MspA1I	CMGCKG	1 cut(s)	519
MspI	CCGG	1 cut(s)	503
Mva1269I	GAATGC	1 cut(s)	881
MvnI	CGCG	1 cut(s)	710
MwoI	GCNNNNNNNGC	4 cut(s)	173, 318, 548, 666
NdeII	GATC	7 cut(s)	23, 57, 354, 464, 573, 637, 839
NlaIII	CATG	5 cut(s)	95, 374, 775, 862, 923
NlaIV	GGNNCC	3 cut(s)	216, 443, 466
NmeAIII	GCCGAG	1 cut(s)	581
NmuCI	GTSAC	1 cut(s)	427
PagI	TCATGA	1 cut(s)	858
PceI	AGGCCT	2 cut(s)	530, 947
PcsI	WCGNNNNNNNCGW	2 cut(s)	151, 714
PctI	GAATGC	1 cut(s)	881
PfeI	GAWTC	6 cut(s)	344, 493, 554, 650, 697, 916
PflFI	GACNNNGTC	1 cut(s)	425
Ple19I	CGATCG	1 cut(s)	842
Ppu21I	YACGTR	1 cut(s)	403
PspFI	CCCAGC	1 cut(s)	519
PspN4I	GGNNCC	3 cut(s)	216, 443, 466
PstI	CTGCAG	1 cut(s)	461
PstNI	CAGNNNCTG	1 cut(s)	739
PsuI	RGATCY	2 cut(s)	464, 573
PsyI	GACNNNGTC	1 cut(s)	425
PvuI	CGATCG	1 cut(s)	842
SaqAI	TTAA	2 cut(s)	591, 908
Sau3AI	GATC	7 cut(s)	23, 57, 354, 464, 573, 637, 839
SduI	GDGCHC	6 cut(s)	217, 330, 446, 483, 662, 688
SfaNI	GCATC	1 cut(s)	800
SfcI	CTRYAG	4 cut(s)	30, 364, 457, 889
Sse9I	AATT	4 cut(s)	52, 198, 243, 903
SseBI	AGGCCT	2 cut(s)	530, 947
SsiI	CCGC	5 cut(s)	87, 500, 517, 551, 710
SspI	AATATT	1 cut(s)	566
SspMI	CTAG	2 cut(s)	210, 470
StuI	AGGCCT	2 cut(s)	530, 947
StyI	CCWWGG	1 cut(s)	789
TaaI	ACNGT	6 cut(s)	18, 365, 380, 389, 485, 584
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	5 cut(s)	22, 324, 491, 717, 834
TasI	AATT	4 cut(s)	52, 198, 243, 903
TfiI	GAWTC	6 cut(s)	344, 493, 554, 650, 697, 916
Tru1I	TTAA	2 cut(s)	591, 908
Tru9I	TTAA	2 cut(s)	591, 908
TscAI	CASTG	3 cut(s)	23, 488, 671
TseFI	GTSAC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	7 cut(s)	20, 255, 336, 576, 760, 847, 875
TspGWI	ACGGA	1 cut(s)	690
TspRI	CASTG	3 cut(s)	23, 488, 671
Tth111I	GACNNNGTC	1 cut(s)	425
XapI	RAATTY	1 cut(s)	903
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XspI	CTAG	2 cut(s)	210, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.