Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Reverse (-)

18300409 .. 18302190

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G191400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGCAACATAATTTGCAGAGGAAAAAACCTGGACAAGCAAGTTCTGGGAGGCAAACAATTGGGCAACAAAATCGGTACCCTCATGACCAAACATAGTAAACATATGAAAGAAAAGAAGCAAGTTGGTGATATTGATCCAAATTTTGTATGTCGCTTCTGCCATGAGCAAGTTCATCAAGAACACTCATTCAACATCAAGGGTTGCGCCCATTTTTACTGTCAAGAGTGCATTGTTAAATTCATAGTGTCCAATCTCCAAAACAATGTGACATGCATTATGTGCCCCACACCAGGCTGCAGTGGCCTGCTAGACCCTGAGTACTGTCGTCCAATCCTCCCGAACGACGTCTTTGATCTGTGGGGGACTGCCTTGTGTGAATCTCTTTTGGAAACAGAGCACGCTGTTGATTCAACTTTCACATGTGATTTCTGTGTTGAGCAAATTGAGCTAAAAGACTCATTTAACATCAAGGGTTGCGCCCATTTTTACTGTCAAGAGTGCATTGTTAGATTCATAGTGTCCAAGCTCCAAGACAATGTCACATCTGTTACGTGCCCGAATCAAGGATGCCCTGGGGTGTTAGACCTTGAGTACTGCCGTCGAATTCTCCCATACGACGTCTTTCACCGCTGGGGCAAGGCCTTGTGTGAATCTGTGGTTATGGAGCCTCAGAAAAAGTACTTATTCTGTCCCTTCAACGCATGCTCCACGCTGTTGATTGATGAGGAACCAGATGATACCAAACAAGCTCAGTGTCCTCATTGCAAGAGAGTGTTTTGTGTCAAGTGTAAGGTTCCTTGGCATACCGAATTCGATTGTGACATGTTCCAGAAACTGAGAGATAGGGGTGAAGATCAGCAGCTGGAAGAGCTTGCCAAGAATAAGAACTGGAGGAGGTGTCCAAGTTGCAAGTACTATGTTGAAAGACGCGATGGGTGCAGCTACATAAAATGCAGGTGTGGAAATGCTTTCTGTTACAATTGTGGAGTTCAAGCTTCCTTAACTTCACATACCAGACATTGTCCAAGCTGTCACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

348

Amino Acids

39.86

Weight (kDa)

7.61

Isoelectric Point (pI)

50.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	948
AatII	GACGTC	2 cut(s)	351, 624
Acc36I	ACCTGC	1 cut(s)	948
Acc65I	GGTACC	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	77
AccII	CGCG	1 cut(s)	933
AciI	CCGC	1 cut(s)	631
AclWI	GGATC	1 cut(s)	131
AcsI	RAATTY	4 cut(s)	142, 239, 606, 812
AcyI	GRCGYC	2 cut(s)	348, 621
AfaI	GTAC	5 cut(s)	79, 323, 596, 683, 917
AfiI	CCNNNNNNNGG	2 cut(s)	293, 566
AflIII	ACRYGT	2 cut(s)	422, 825
AgsI	TTSAA	5 cut(s)	193, 414, 700, 926, 995
AjnI	CCWGG	3 cut(s)	30, 292, 574
AluBI	AGCT	8 cut(s)	451, 529, 752, 865, 874, 945, 998, 1032
AluI	AGCT	8 cut(s)	451, 529, 752, 865, 874, 945, 998, 1032
Alw21I	GWGCWC	1 cut(s)	402
AlwI	GGATC	1 cut(s)	131
AlwNI	CAGNNNCTG	2 cut(s)	838, 865
AoxI	GGCC	2 cut(s)	304, 642
ApeKI	GCWGC	3 cut(s)	297, 862, 942
ApoI	RAATTY	4 cut(s)	142, 239, 606, 812
Asp718I	GGTACC	1 cut(s)	77
AspLEI	GCGC	2 cut(s)	209, 482
AsuHPI	GGTGA	3 cut(s)	140, 620, 863
BaeGI	GKGCMC	2 cut(s)	287, 560
BanI	GGYRCC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	3 cut(s)	284, 874, 954
BccI	CCATC	1 cut(s)	929
BceAI	ACGGC	1 cut(s)	585
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BciT130I	CCWGG	3 cut(s)	32, 294, 576
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	298
BfuAI	ACCTGC	1 cut(s)	948
BisI	GCNGC	3 cut(s)	298, 863, 943
BlsI	GCNGC	3 cut(s)	299, 864, 944
BmcAI	AGTACT	4 cut(s)	323, 596, 683, 917
Bme1390I	CCNGG	3 cut(s)	32, 294, 576
BmiI	GGNNCC	4 cut(s)	79, 669, 732, 798
BmrFI	CCNGG	3 cut(s)	32, 294, 576
BmsI	GCATC	1 cut(s)	560
BpmI	CTGGAG	1 cut(s)	913
BpuEI	CTTGAG	1 cut(s)	611
BsaAI	YACGTR	1 cut(s)	555
BsaBI	GATNNNNATC	1 cut(s)	135
BsaHI	GRCGYC	2 cut(s)	348, 621
BsaJI	CCNNGG	3 cut(s)	574, 575, 800
BsaXI	ACNNNNNCTCC	4 cut(s)	692, 722, 886, 916
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 566
Bse1I	ACTGG	1 cut(s)	896
Bse3DI	GCAATG	1 cut(s)	763
Bse8I	GATNNNNATC	1 cut(s)	135
BseBI	CCWGG	3 cut(s)	32, 294, 576
BseDI	CCNNGG	3 cut(s)	574, 575, 800
BseGI	GGATG	1 cut(s)	575
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	2 cut(s)	293, 566
BseMI	GCAATG	1 cut(s)	763
BseMII	CTCAG	4 cut(s)	309, 686, 767, 830
BseNI	ACTGG	1 cut(s)	896
BseRI	GAGGAG	1 cut(s)	910
BseSI	GKGCMC	2 cut(s)	287, 560
BseXI	GCAGC	3 cut(s)	284, 874, 954
BseYI	CCCAGC	1 cut(s)	633
BsgI	GTGCAG	1 cut(s)	961
Bsh1236I	CGCG	1 cut(s)	933
BshFI	GGCC	2 cut(s)	306, 644
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	402
BslFI	GGGAC	2 cut(s)	379, 678
BslI	CCNNNNNNNGG	2 cut(s)	293, 566
BsmFI	GGGAC	2 cut(s)	379, 678
BsnI	GGCC	2 cut(s)	306, 644
Bsp1286I	GDGCHC	3 cut(s)	287, 402, 560
Bsp143I	GATC	3 cut(s)	136, 355, 856
BspACI	CCGC	1 cut(s)	631
BspANI	GGCC	2 cut(s)	306, 644
BspCNI	CTCAG	4 cut(s)	310, 685, 766, 831
BspFNI	CGCG	1 cut(s)	933
BspHI	TCATGA	1 cut(s)	84
BspLI	GGNNCC	4 cut(s)	79, 669, 732, 798
BspMAI	CTGCAG	1 cut(s)	302
BspMI	ACCTGC	1 cut(s)	948
BspPI	GGATC	1 cut(s)	131
BspQI	GCTCTTC	1 cut(s)	864
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	763
BsrI	ACTGG	1 cut(s)	896
BssECI	CCNNGG	3 cut(s)	574, 575, 800
BssMI	GATC	3 cut(s)	136, 355, 856
BssNI	GRCGYC	2 cut(s)	348, 621
BssT1I	CCWWGG	1 cut(s)	800
Bst2UI	CCWGG	3 cut(s)	32, 294, 576
Bst4CI	ACNGT	3 cut(s)	221, 326, 494
Bst6I	CTCTTC	1 cut(s)	864
BstACI	GRCGYC	2 cut(s)	348, 621
BstAPI	GCANNNNNTGC	1 cut(s)	282
BstBAI	YACGTR	1 cut(s)	555
BstC8I	GCNNGC	4 cut(s)	308, 402, 706, 876
BstDEI	CTNAG	4 cut(s)	318, 672, 753, 839
BstF5I	GGATG	1 cut(s)	575
BstFNI	CGCG	1 cut(s)	933
BstHHI	GCGC	2 cut(s)	209, 482
BstKTI	GATC	3 cut(s)	139, 358, 859
BstMBI	GATC	3 cut(s)	136, 355, 856
BstMWI	GCNNNNNNNGC	5 cut(s)	282, 303, 448, 871, 939
BstNI	CCWGG	3 cut(s)	32, 294, 576
BstNSI	RCATGY	4 cut(s)	276, 426, 708, 829
BstSCI	CCNGG	3 cut(s)	30, 292, 574
BstSFI	CTRYAG	1 cut(s)	298
BstSLI	GKGCMC	2 cut(s)	287, 560
BstUI	CGCG	1 cut(s)	933
BstV1I	GCAGC	3 cut(s)	284, 874, 954
BsuRI	GGCC	2 cut(s)	306, 644
BtgZI	GCGATG	1 cut(s)	948
BtsCI	GGATG	1 cut(s)	575
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	307, 761
BveI	ACCTGC	1 cut(s)	948
Cac8I	GCNNGC	4 cut(s)	308, 402, 706, 876
CaiI	CAGNNNCTG	2 cut(s)	838, 865
CciI	TCATGA	1 cut(s)	84
CfoI	GCGC	2 cut(s)	209, 482
CseI	GACGC	1 cut(s)	939
Csp6I	GTAC	5 cut(s)	78, 322, 595, 682, 916
CviAII	CATG	6 cut(s)	85, 164, 273, 423, 705, 826
CviQI	GTAC	5 cut(s)	78, 322, 595, 682, 916
DdeI	CTNAG	4 cut(s)	318, 672, 753, 839
DpnI	GATC	3 cut(s)	138, 357, 858
DpnII	GATC	3 cut(s)	136, 355, 856
Eam1104I	CTCTTC	1 cut(s)	864
EarI	CTCTTC	1 cut(s)	864
Eco130I	CCWWGG	1 cut(s)	800
Eco147I	AGGCCT	1 cut(s)	644
EcoRI	GAATTC	2 cut(s)	606, 812
EcoRII	CCWGG	3 cut(s)	30, 292, 574
EcoT14I	CCWWGG	1 cut(s)	800
EcoT22I	ATGCAT	1 cut(s)	278
ErhI	CCWWGG	1 cut(s)	800
FaeI	CATG	6 cut(s)	88, 167, 276, 426, 708, 829
FaqI	GGGAC	2 cut(s)	379, 678
FatI	CATG	6 cut(s)	84, 163, 272, 422, 704, 825
FauNDI	CATATG	1 cut(s)	105
Fnu4HI	GCNGC	3 cut(s)	298, 863, 943
FokI	GGATG	1 cut(s)	582
Fsp4HI	GCNGC	3 cut(s)	298, 863, 943
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	2 cut(s)	208, 481
GluI	GCNGC	3 cut(s)	298, 863, 943
GsaI	CCCAGC	1 cut(s)	637
GsuI	CTGGAG	1 cut(s)	913
HaeIII	GGCC	2 cut(s)	306, 644
HgaI	GACGC	1 cut(s)	939
HhaI	GCGC	2 cut(s)	209, 482
Hin1I	GRCGYC	2 cut(s)	348, 621
Hin1II	CATG	6 cut(s)	88, 167, 276, 426, 708, 829
Hin6I	GCGC	2 cut(s)	207, 480
HinP1I	GCGC	2 cut(s)	207, 480
HindIII	AAGCTT	1 cut(s)	996
HinfI	GANTC	6 cut(s)	380, 410, 458, 513, 562, 653
HphI	GGTGA	3 cut(s)	140, 620, 863
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	675
Hpy188III	TCNNGA	6 cut(s)	85, 179, 224, 340, 497, 832
Hpy8I	GTNNAC	1 cut(s)	101
Hpy99I	CGWCG	3 cut(s)	350, 606, 623
HpyAV	CCTTC	1 cut(s)	706
HpyCH4III	ACNGT	3 cut(s)	221, 326, 494
HpyCH4IV	ACGT	3 cut(s)	348, 554, 621
HpyCH4V	TGCA	9 cut(s)	18, 231, 276, 300, 504, 768, 912, 942, 957
HpyF10VI	GCNNNNNNNGC	5 cut(s)	282, 303, 448, 871, 939
HpyF3I	CTNAG	4 cut(s)	318, 672, 753, 839
HpySE526I	ACGT	3 cut(s)	348, 554, 621
Hsp92I	GRCGYC	2 cut(s)	348, 621
Hsp92II	CATG	6 cut(s)	88, 167, 276, 426, 708, 829
HspAI	GCGC	2 cut(s)	207, 480
KpnI	GGTACC	1 cut(s)	81
Kzo9I	GATC	3 cut(s)	136, 355, 856
LguI	GCTCTTC	1 cut(s)	864
LmnI	GCTCC	3 cut(s)	534, 667, 713
Lsp1109I	GCAGC	3 cut(s)	284, 874, 954
LweI	GCATC	1 cut(s)	560
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	3 cut(s)	348, 554, 621
MaeIII	GTNAC	6 cut(s)	268, 541, 550, 821, 977, 1034
MalI	GATC	3 cut(s)	138, 357, 858
MboI	GATC	3 cut(s)	136, 355, 856
MboII	GAAGA	2 cut(s)	866, 881
MfeI	CAATTG	2 cut(s)	59, 982
MhlI	GDGCHC	3 cut(s)	287, 402, 560
MluCI	AATT	8 cut(s)	12, 59, 142, 239, 444, 606, 812, 982
MlyI	GAGTC	1 cut(s)	452
MnlI	CCTC	9 cut(s)	14, 44, 92, 347, 681, 721, 771, 888, 891
Mph1103I	ATGCAT	1 cut(s)	278
MseI	TTAA	3 cut(s)	237, 465, 1004
MspA1I	CMGCKG	2 cut(s)	633, 865
MspR9I	CCNGG	3 cut(s)	32, 294, 576
MunI	CAATTG	2 cut(s)	59, 982
MvaI	CCWGG	3 cut(s)	32, 294, 576
MvnI	CGCG	1 cut(s)	933
MwoI	GCNNNNNNNGC	5 cut(s)	282, 303, 448, 871, 939
NdeI	CATATG	1 cut(s)	105
NdeII	GATC	3 cut(s)	136, 355, 856
NlaIII	CATG	6 cut(s)	88, 167, 276, 426, 708, 829
NlaIV	GGNNCC	4 cut(s)	79, 669, 732, 798
NmuCI	GTSAC	4 cut(s)	268, 541, 821, 1034
NsiI	ATGCAT	1 cut(s)	278
NspI	RCATGY	4 cut(s)	276, 426, 708, 829
PaeI	GCATGC	1 cut(s)	708
PagI	TCATGA	1 cut(s)	84
PaqCI	CACCTGC	1 cut(s)	948
PasI	CCCWGGG	1 cut(s)	575
PceI	AGGCCT	1 cut(s)	644
PciI	ACATGT	2 cut(s)	422, 825
PciSI	GCTCTTC	1 cut(s)	864
PfeI	GAWTC	5 cut(s)	380, 410, 513, 562, 653
PflFI	GACNNNGTC	2 cut(s)	539, 1023
PkrI	GCNGC	3 cut(s)	299, 864, 944
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
Ppu21I	YACGTR	1 cut(s)	555
PscI	ACATGT	2 cut(s)	422, 825
Psp6I	CCWGG	3 cut(s)	30, 292, 574
PspFI	CCCAGC	1 cut(s)	633
PspGI	CCWGG	3 cut(s)	30, 292, 574
PspN4I	GGNNCC	4 cut(s)	79, 669, 732, 798
PstI	CTGCAG	1 cut(s)	302
PstNI	CAGNNNCTG	2 cut(s)	838, 865
PsyI	GACNNNGTC	2 cut(s)	539, 1023
PvuII	CAGCTG	1 cut(s)	865
RsaI	GTAC	5 cut(s)	79, 323, 596, 683, 917
RsaNI	GTAC	5 cut(s)	78, 322, 595, 682, 916
SapI	GCTCTTC	1 cut(s)	864
SaqAI	TTAA	3 cut(s)	237, 465, 1004
SatI	GCNGC	3 cut(s)	298, 863, 943
Sau3AI	GATC	3 cut(s)	136, 355, 856
ScaI	AGTACT	4 cut(s)	323, 596, 683, 917
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	3 cut(s)	32, 294, 576
SduI	GDGCHC	3 cut(s)	287, 402, 560
SfaNI	GCATC	1 cut(s)	560
SfcI	CTRYAG	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
SphI	GCATGC	1 cut(s)	708
Sse9I	AATT	8 cut(s)	12, 59, 142, 239, 444, 606, 812, 982
SseBI	AGGCCT	1 cut(s)	644
SsiI	CCGC	1 cut(s)	631
SspMI	CTAG	1 cut(s)	311
StuI	AGGCCT	1 cut(s)	644
StyD4I	CCNGG	3 cut(s)	30, 292, 574
StyI	CCWWGG	1 cut(s)	800
TaaI	ACNGT	3 cut(s)	221, 326, 494
TaiI	ACGT	3 cut(s)	351, 557, 624
TaqI	TCGA	2 cut(s)	604, 816
TasI	AATT	8 cut(s)	12, 59, 142, 239, 444, 606, 812, 982
TatI	WGTACW	4 cut(s)	321, 594, 681, 915
TfiI	GAWTC	5 cut(s)	380, 410, 513, 562, 653
Tru1I	TTAA	3 cut(s)	237, 465, 1004
Tru9I	TTAA	3 cut(s)	237, 465, 1004
TscAI	CASTG	2 cut(s)	307, 761
TseFI	GTSAC	4 cut(s)	268, 541, 821, 1034
TseI	GCWGC	3 cut(s)	297, 862, 942
Tsp45I	GTSAC	4 cut(s)	268, 541, 821, 1034
TspDTI	ATGAA	4 cut(s)	122, 164, 232, 505
TspRI	CASTG	2 cut(s)	307, 761
Tth111I	GACNNNGTC	2 cut(s)	539, 1023
XapI	RAATTY	4 cut(s)	142, 239, 606, 812
XceI	RCATGY	4 cut(s)	276, 426, 708, 829
XspI	CTAG	1 cut(s)	311
ZraI	GACGTC	2 cut(s)	349, 622
ZrmI	AGTACT	4 cut(s)	323, 596, 683, 917
Zsp2I	ATGCAT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.