Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Reverse (-)

8380234 .. 8383964

Gene Structure 3731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016629

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGTTGGAGAATCAACCCCATCATCATCACACCATTGATCACGATCACGATCACGATCACGATCACATGAACCCTCCAATCATCTCCAATGGACAATCTTCCACTAGTACTAGTTTTGATACTCCTAGGAGAACTTTCATATGTGTCTCCAAGCTCCAAGACAATGTCGATTGGTCTCTGCAATGCCCTGTGCCAACCTGCACCGGAACACTAGACCCTGACTACTGCCGGCCAATCCTTCCGAGTCAGATCGAGCAATCTTCTTATGGTGCCGAAAGCAGTAATAGTGGTACTACTATTACATGTGATTTTTGTGTTGAGGAAAAGCATCTGAGTGACTCGTTTAGTGTCAAAGATTGCAGCCATTTTTACTGCCACCAATGCCTCGTCAATTTTGTCGTGTCAAAGCTGGAGGACAATGTGACCTCCATTACCTGCAGTCCGTACTGTCAGTCATTTCTCCCGAAAGATGTTCTTGATTGGTGGGGGAAGGCCTTGTGTGAAAATGTGATTTTGGGGTCGGAGAACAATGACAACACTGCTGATATATACAAGTCTCAGTGTCCTCATTGCAAGAGAGTGGTTTGCTTGAATTGCAAGGTTCCTTGGCATACGGAGTTCAACTGCGACAAGTTTCAGAAATTGAGAGACAAGGGTGAAGGTGAGATGGTGAAGGAGCTAGCCAAGAAAAAGAAGTGGAGGAAGTGCCCAAAATGCAACTACTATGTTGAGAAAAAAGATGAGTGCACTTACATTAAATGCAGGTGTAGGCATGCTTTCTGTTACAACTGTGGAATAGCAGCTGCCGTTGATGTTCATCTGCAGGACTCATTAGACGTCAATGGTTGCAATCATTTTTACTGTCGACAATGCATTGTTAATTACGTATCGTCCAAGCTCGAAGACAACGTCACGTCCATTATGTGCCCTGAAGCAGGCTGCAGTGGAGTGCTAGACCCTGAGTACTGTCGTCCAATCCTTCCGAACGAGGTCTTTGATTGGTGCATGGAGACTGCCTTACAAAGTCAAAATGAGCAATCTTCGAATCCTGAAATCAATGATCATAGTACTAGCAATGGCAGTAGAACTTTCATATGTGATCTCTGCTCATTTCCGCTTGAAGAGTCATTCAACATCAAGGGTTGCAGCCACTTTTCCTATCAGCAGTGCATAGTTAATTTTGTATCATCGAAGCTCCAAGACAATGGAGTGCTAGACCCCGAGTACTGTCATCCAATCCTCCCAAACGACATCTATGACCGGTGGGGAAAAGCCCTATGTGAAAATGTGATCATGGGATCCAAAAGCACTATGAACTACTTCTACTGTCCCTTTGCAGATTGCTCGGCGCTGTTGATTTGTGACGAACAGAATCAGAATGAGTCTCAGTGTCCTCACTACGAGAGAGCGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

472

Amino Acids

53.66

Weight (kDa)

5.28

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	226 - 266	6.9e-07	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	753
AatII	GACGTC	1 cut(s)	840
Acc36I	ACCTGC	3 cut(s)	206, 443, 753
AccB1I	GGYRCC	1 cut(s)	269
AccBSI	CCGCTC	1 cut(s)	1409
AccI	GTMKAC	1 cut(s)	865
AciI	CCGC	2 cut(s)	1115, 1409
AclWI	GGATC	2 cut(s)	1293, 1306
AcoI	YGGCCR	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	951
AcyI	GRCGYC	1 cut(s)	837
AfaI	GTAC	6 cut(s)	109, 292, 446, 965, 1069, 1226
AfiI	CCNNNNNNNGG	1 cut(s)	935
AflIII	ACRYGT	1 cut(s)	302
AgeI	ACCGGT	1 cut(s)	1260
AgsI	TTSAA	4 cut(s)	592, 622, 1121, 1132
AhlI	ACTAGT	2 cut(s)	104, 110
AjiI	CACGTC	1 cut(s)	915
AluBI	AGCT	6 cut(s)	154, 409, 679, 803, 898, 1195
AluI	AGCT	6 cut(s)	154, 409, 679, 803, 898, 1195
Alw21I	GWGCWC	1 cut(s)	749
Alw26I	GTCTC	6 cut(s)	151, 180, 561, 642, 1004, 1389
Alw44I	GTGCAC	1 cut(s)	745
AlwI	GGATC	2 cut(s)	1293, 1306
Ama87I	CYCGRG	1 cut(s)	1220
AoxI	GGCC	2 cut(s)	230, 492
ApaLI	GTGCAC	1 cut(s)	745
ApeKI	GCWGC	5 cut(s)	360, 800, 803, 939, 1146
ArsI	GACNNNNNNTTYG	2 cut(s)	894, 926
AsiGI	ACCGGT	1 cut(s)	1260
Asp700I	GAANNNNTTC	1 cut(s)	1319
AspA2I	CCTAGG	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	1351
AsuHPI	GGTGA	3 cut(s)	668, 674, 682
AsuII	TTCGAA	1 cut(s)	1043
AsuNHI	GCTAGC	1 cut(s)	679
AvaI	CYCGRG	1 cut(s)	1220
AvrII	CCTAGG	1 cut(s)	125
BaeGI	GKGCMC	3 cut(s)	710, 749, 929
BamHI	GGATCC	1 cut(s)	1298
BanI	GGYRCC	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	909
Bbv12I	GWGCWC	1 cut(s)	749
BbvI	GCAGC	5 cut(s)	372, 790, 812, 926, 1158
BccI	CCATC	2 cut(s)	27, 661
BceAI	ACGGC	1 cut(s)	791
BcgI	CGANNNNNNTGC	2 cut(s)	1326, 1360
BclI	TGATCA	3 cut(s)	37, 1060, 1290
BcoDI	GTCTC	6 cut(s)	151, 180, 561, 642, 1004, 1389
BcuI	ACTAGT	2 cut(s)	104, 110
BfaI	CTAG	8 cut(s)	105, 111, 126, 212, 680, 953, 1071, 1214
BfmI	CTRYAG	3 cut(s)	436, 821, 940
BfoI	RGCGCY	1 cut(s)	1352
BfuAI	ACCTGC	3 cut(s)	206, 443, 753
BisI	GCNGC	5 cut(s)	361, 801, 804, 940, 1147
BlnI	CCTAGG	1 cut(s)	125
BlsI	GCNGC	5 cut(s)	362, 802, 805, 941, 1148
BmcAI	AGTACT	4 cut(s)	109, 965, 1069, 1226
BmeT110I	CYCGRG	1 cut(s)	1220
BmgBI	CACGTC	1 cut(s)	915
BmiI	GGNNCC	3 cut(s)	271, 603, 1300
BmsI	GCATC	1 cut(s)	337
BmtI	GCTAGC	1 cut(s)	683
BpiI	GAAGAC	1 cut(s)	909
BpmI	CTGGAG	1 cut(s)	431
Bpu14I	TTCGAA	1 cut(s)	1043
BsaAI	YACGTR	1 cut(s)	886
BsaBI	GATNNNNATC	5 cut(s)	42, 48, 54, 60, 816
BsaHI	GRCGYC	1 cut(s)	837
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	125, 605
BsaWI	WCCGGW	2 cut(s)	203, 1260
Bsc4I	CCNNNNNNNGG	1 cut(s)	935
Bse118I	RCCGGY	2 cut(s)	228, 1260
Bse3DI	GCAATG	3 cut(s)	188, 568, 1081
Bse8I	GATNNNNATC	5 cut(s)	42, 48, 54, 60, 816
BseDI	CCNNGG	2 cut(s)	125, 605
BseGI	GGATG	1 cut(s)	1231
BseJI	GATNNNNATC	5 cut(s)	42, 48, 54, 60, 816
BseLI	CCNNNNNNNGG	1 cut(s)	935
BseMI	GCAATG	3 cut(s)	188, 568, 1081
BseMII	CTCAG	4 cut(s)	323, 572, 951, 1400
BseSI	GKGCMC	3 cut(s)	710, 749, 929
BseXI	GCAGC	5 cut(s)	372, 790, 812, 926, 1158
BsgI	GTGCAG	1 cut(s)	184
BshFI	GGCC	2 cut(s)	232, 494
BshNI	GGYRCC	1 cut(s)	269
BshTI	ACCGGT	1 cut(s)	1260
BsiHKAI	GWGCWC	1 cut(s)	749
BsiHKCI	CYCGRG	1 cut(s)	1220
BsiSI	CCGG	3 cut(s)	204, 229, 1261
BslFI	GGGAC	1 cut(s)	1314
BslI	CCNNNNNNNGG	1 cut(s)	935
BsmAI	GTCTC	6 cut(s)	151, 180, 561, 642, 1004, 1389
BsmFI	GGGAC	1 cut(s)	1314
BsnI	GGCC	2 cut(s)	232, 494
Bso31I	GGTCTC	1 cut(s)	180
BsoBI	CYCGRG	1 cut(s)	1220
Bsp119I	TTCGAA	1 cut(s)	1043
Bsp1286I	GDGCHC	3 cut(s)	710, 749, 929
BspACI	CCGC	2 cut(s)	1115, 1409
BspANI	GGCC	2 cut(s)	232, 494
BspCNI	CTCAG	4 cut(s)	324, 571, 952, 1399
BspLI	GGNNCC	3 cut(s)	271, 603, 1300
BspMAI	CTGCAG	3 cut(s)	440, 825, 944
BspMI	ACCTGC	3 cut(s)	206, 443, 753
BspOI	GCTAGC	1 cut(s)	683
BspPI	GGATC	2 cut(s)	1293, 1306
BspT104I	TTCGAA	1 cut(s)	1043
BspT107I	GGYRCC	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	180
BsrBI	CCGCTC	1 cut(s)	1409
BsrDI	GCAATG	3 cut(s)	188, 568, 1081
BsrFI	RCCGGY	2 cut(s)	228, 1260
BssAI	RCCGGY	2 cut(s)	228, 1260
BssECI	CCNNGG	2 cut(s)	125, 605
BssNI	GRCGYC	1 cut(s)	837
BssT1I	CCWWGG	2 cut(s)	125, 605
Bst4CI	ACNGT	6 cut(s)	449, 791, 863, 968, 1229, 1328
Bst6I	CTCTTC	1 cut(s)	1116
BstACI	GRCGYC	1 cut(s)	837
BstBAI	YACGTR	1 cut(s)	886
BstBI	TTCGAA	1 cut(s)	1043
BstC8I	GCNNGC	4 cut(s)	230, 681, 774, 937
BstDEI	CTNAG	4 cut(s)	332, 558, 960, 1386
BstENI	CCTNNNNNAGG	1 cut(s)	933
BstF5I	GGATG	1 cut(s)	1231
BstH2I	RGCGCY	1 cut(s)	1352
BstHHI	GCGC	1 cut(s)	1351
BstMAI	GTCTC	6 cut(s)	151, 180, 561, 642, 1004, 1389
BstMWI	GCNNNNNNNGC	3 cut(s)	381, 594, 714
BstNSI	RCATGY	2 cut(s)	306, 776
BstSFI	CTRYAG	3 cut(s)	436, 821, 940
BstSLI	GKGCMC	3 cut(s)	710, 749, 929
BstSNI	TACGTA	1 cut(s)	886
BstV1I	GCAGC	5 cut(s)	372, 790, 812, 926, 1158
BstV2I	GAAGAC	1 cut(s)	909
BstX2I	RGATCY	1 cut(s)	1298
BstXI	CCANNNNNNTGG	1 cut(s)	1205
BstYI	RGATCY	1 cut(s)	1298
BsuRI	GGCC	2 cut(s)	232, 494
BtrI	CACGTC	1 cut(s)	915
BtsCI	GGATG	1 cut(s)	1231
BtsI	GCAGTG	3 cut(s)	537, 949, 1172
BtsIMutI	CAGTG	5 cut(s)	537, 566, 949, 1172, 1394
BveI	ACCTGC	3 cut(s)	206, 443, 753
Cac8I	GCNNGC	4 cut(s)	230, 681, 774, 937
CfoI	GCGC	1 cut(s)	1351
Cfr10I	RCCGGY	2 cut(s)	228, 1260
Csp6I	GTAC	6 cut(s)	108, 291, 445, 964, 1068, 1225
CspAI	ACCGGT	1 cut(s)	1260
CviAII	CATG	5 cut(s)	67, 303, 773, 1006, 1294
CviQI	GTAC	6 cut(s)	108, 291, 445, 964, 1068, 1225
DdeI	CTNAG	4 cut(s)	332, 558, 960, 1386
EaeI	YGGCCR	1 cut(s)	230
Eam1104I	CTCTTC	1 cut(s)	1116
EarI	CTCTTC	1 cut(s)	1116
Eco105I	TACGTA	1 cut(s)	886
Eco130I	CCWWGG	2 cut(s)	125, 605
Eco147I	AGGCCT	1 cut(s)	494
Eco31I	GGTCTC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	951
Eco88I	CYCGRG	1 cut(s)	1220
EcoNI	CCTNNNNNAGG	1 cut(s)	933
EcoT14I	CCWWGG	2 cut(s)	125, 605
EcoT22I	ATGCAT	1 cut(s)	875
ErhI	CCWWGG	2 cut(s)	125, 605
FaeI	CATG	5 cut(s)	70, 306, 776, 1009, 1297
FalI	AAGNNNNNCTT	2 cut(s)	459, 491
FaqI	GGGAC	1 cut(s)	1314
FatI	CATG	5 cut(s)	66, 302, 772, 1005, 1293
FauNDI	CATATG	2 cut(s)	140, 1094
FbaI	TGATCA	3 cut(s)	37, 1060, 1290
FblI	GTMKAC	1 cut(s)	865
Fnu4HI	GCNGC	5 cut(s)	361, 801, 804, 940, 1147
FokI	GGATG	1 cut(s)	1218
Fsp4HI	GCNGC	5 cut(s)	361, 801, 804, 940, 1147
FspBI	CTAG	8 cut(s)	105, 111, 126, 212, 680, 953, 1071, 1214
GlaI	GCGC	1 cut(s)	1350
GluI	GCNGC	5 cut(s)	361, 801, 804, 940, 1147
GsuI	CTGGAG	1 cut(s)	431
HaeII	RGCGCY	1 cut(s)	1352
HaeIII	GGCC	2 cut(s)	232, 494
HapII	CCGG	3 cut(s)	204, 229, 1261
HhaI	GCGC	1 cut(s)	1351
Hin1I	GRCGYC	1 cut(s)	837
Hin1II	CATG	5 cut(s)	70, 306, 776, 1009, 1297
Hin6I	GCGC	1 cut(s)	1349
HinP1I	GCGC	1 cut(s)	1349
HincII	GTYRAC	1 cut(s)	866
HindII	GTYRAC	1 cut(s)	866
HinfI	GANTC	8 cut(s)	10, 244, 338, 827, 1045, 1124, 1372, 1382
HpaII	CCGG	3 cut(s)	204, 229, 1261
HphI	GGTGA	3 cut(s)	668, 674, 682
Hpy166II	GTNNAC	2 cut(s)	747, 866
Hpy188I	TCNGA	8 cut(s)	243, 249, 333, 523, 639, 984, 1377, 1415
Hpy188III	TCNNGA	7 cut(s)	41, 47, 53, 59, 463, 476, 1049
Hpy8I	GTNNAC	2 cut(s)	747, 866
HpyAV	CCTTC	5 cut(s)	248, 484, 653, 667, 989
HpyCH4III	ACNGT	6 cut(s)	449, 791, 863, 968, 1229, 1328
HpyCH4IV	ACGT	4 cut(s)	837, 885, 909, 914
HpyF10VI	GCNNNNNNNGC	3 cut(s)	381, 594, 714
HpyF3I	CTNAG	4 cut(s)	332, 558, 960, 1386
HpySE526I	ACGT	4 cut(s)	837, 885, 909, 914
Hsp92I	GRCGYC	1 cut(s)	837
Hsp92II	CATG	5 cut(s)	70, 306, 776, 1009, 1297
HspAI	GCGC	1 cut(s)	1349
KroI	GCCGGC	1 cut(s)	228
KroNI	GCCGGC	1 cut(s)	230
Ksp22I	TGATCA	3 cut(s)	37, 1060, 1290
LmnI	GCTCC	3 cut(s)	159, 676, 1200
Lsp1109I	GCAGC	5 cut(s)	372, 790, 812, 926, 1158
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	8 cut(s)	105, 111, 126, 212, 680, 953, 1071, 1214
MaeII	ACGT	4 cut(s)	837, 885, 909, 914
MaeIII	GTNAC	5 cut(s)	335, 421, 782, 910, 1361
MbiI	CCGCTC	1 cut(s)	1409
MboII	GAAGA	5 cut(s)	90, 252, 914, 1032, 1133
MflI	RGATCY	1 cut(s)	1298
MhlI	GDGCHC	3 cut(s)	710, 749, 929
MluCI	AATT	5 cut(s)	391, 592, 641, 880, 1177
MlyI	GAGTC	5 cut(s)	253, 332, 821, 1133, 1391
MmeI	TCCRAC	1 cut(s)	501
Mph1103I	ATGCAT	1 cut(s)	875
MroNI	GCCGGC	1 cut(s)	228
MroXI	GAANNNNTTC	1 cut(s)	1319
MseI	TTAA	3 cut(s)	756, 879, 1176
MslI	CAYNNNNRTG	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	803
MspI	CCGG	3 cut(s)	204, 229, 1261
MwoI	GCNNNNNNNGC	3 cut(s)	381, 594, 714
NaeI	GCCGGC	1 cut(s)	230
NdeI	CATATG	2 cut(s)	140, 1094
NgoMIV	GCCGGC	1 cut(s)	228
NheI	GCTAGC	1 cut(s)	679
NlaIII	CATG	5 cut(s)	70, 306, 776, 1009, 1297
NlaIV	GGNNCC	3 cut(s)	271, 603, 1300
NmeAIII	GCCGAG	1 cut(s)	1325
NmuCI	GTSAC	4 cut(s)	335, 421, 910, 1361
NsiI	ATGCAT	1 cut(s)	875
NspI	RCATGY	2 cut(s)	306, 776
NspV	TTCGAA	1 cut(s)	1043
PaeI	GCATGC	1 cut(s)	776
PaqCI	CACCTGC	1 cut(s)	753
PceI	AGGCCT	1 cut(s)	494
PciI	ACATGT	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	1 cut(s)	906
PdiI	GCCGGC	1 cut(s)	230
PdmI	GAANNNNTTC	1 cut(s)	1319
PfeI	GAWTC	3 cut(s)	10, 1045, 1372
PflFI	GACNNNGTC	2 cut(s)	164, 908
PinAI	ACCGGT	1 cut(s)	1260
PkrI	GCNGC	5 cut(s)	362, 802, 805, 941, 1148
PleI	GAGTC	5 cut(s)	252, 332, 821, 1132, 1390
PpsI	GAGTC	5 cut(s)	252, 332, 821, 1132, 1390
Ppu21I	YACGTR	1 cut(s)	886
PscI	ACATGT	1 cut(s)	302
PspN4I	GGNNCC	3 cut(s)	271, 603, 1300
PsrI	GAACNNNNNNTAC	2 cut(s)	1307, 1339
PstI	CTGCAG	3 cut(s)	440, 825, 944
PsuI	RGATCY	1 cut(s)	1298
PsyI	GACNNNGTC	2 cut(s)	164, 908
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	6 cut(s)	109, 292, 446, 965, 1069, 1226
RsaNI	GTAC	6 cut(s)	108, 291, 445, 964, 1068, 1225
RseI	CAYNNNNRTG	1 cut(s)	333
SalI	GTCGAC	1 cut(s)	864
SaqAI	TTAA	3 cut(s)	756, 879, 1176
SatI	GCNGC	5 cut(s)	361, 801, 804, 940, 1147
ScaI	AGTACT	4 cut(s)	109, 965, 1069, 1226
SchI	GAGTC	5 cut(s)	253, 332, 821, 1133, 1391
SduI	GDGCHC	3 cut(s)	710, 749, 929
SfaNI	GCATC	1 cut(s)	337
SfcI	CTRYAG	3 cut(s)	436, 821, 940
SfuI	TTCGAA	1 cut(s)	1043
SmiMI	CAYNNNNRTG	1 cut(s)	333
SnaBI	TACGTA	1 cut(s)	886
SpeI	ACTAGT	2 cut(s)	104, 110
SphI	GCATGC	1 cut(s)	776
Sse9I	AATT	5 cut(s)	391, 592, 641, 880, 1177
SseBI	AGGCCT	1 cut(s)	494
SsiI	CCGC	2 cut(s)	1115, 1409
SspMI	CTAG	8 cut(s)	105, 111, 126, 212, 680, 953, 1071, 1214
StuI	AGGCCT	1 cut(s)	494
StyI	CCWWGG	2 cut(s)	125, 605
TaaI	ACNGT	6 cut(s)	449, 791, 863, 968, 1229, 1328
TaiI	ACGT	4 cut(s)	840, 888, 912, 917
TaqI	TCGA	6 cut(s)	168, 252, 865, 900, 1043, 1190
TasI	AATT	5 cut(s)	391, 592, 641, 880, 1177
TatI	WGTACW	4 cut(s)	107, 963, 1067, 1224
TfiI	GAWTC	3 cut(s)	10, 1045, 1372
Tru1I	TTAA	3 cut(s)	756, 879, 1176
Tru9I	TTAA	3 cut(s)	756, 879, 1176
TscAI	CASTG	5 cut(s)	544, 566, 949, 1172, 1394
TseFI	GTSAC	4 cut(s)	335, 421, 910, 1361
TseI	GCWGC	5 cut(s)	360, 800, 803, 939, 1146
Tsp45I	GTSAC	4 cut(s)	335, 421, 910, 1361
TspDTI	ATGAA	5 cut(s)	83, 127, 806, 1081, 1328
TspGWI	ACGGA	2 cut(s)	432, 629
TspRI	CASTG	5 cut(s)	544, 566, 949, 1172, 1394
Tth111I	GACNNNGTC	2 cut(s)	164, 908
VneI	GTGCAC	1 cut(s)	745
XagI	CCTNNNNNAGG	1 cut(s)	933
XceI	RCATGY	2 cut(s)	306, 776
XmaJI	CCTAGG	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	865
XmnI	GAANNNNTTC	1 cut(s)	1319
XspI	CTAG	8 cut(s)	105, 111, 126, 212, 680, 953, 1071, 1214
ZraI	GACGTC	1 cut(s)	838
ZrmI	AGTACT	4 cut(s)	109, 965, 1069, 1226
Zsp2I	ATGCAT	1 cut(s)	875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.