Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Reverse (-)

83723810 .. 83725249

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGATAATGTTGCTAGCCCGAATGCACCAGTTTTGTGTAAGAACCAGAATGCAGTCTTCTAATCATGAGAGCAGTAGTACATGTACTAATTCACTGATGAACAGTACTAGTGCTGGTACTAGCCATTCAAGAAGTACTTTTGTATGTGGTATCTGTCTTGCAATACTTTCCCGGGAAGACTCATTCTACGTTCATGCCTTATTTGATCACAATGGAGAATCTTCAAATCCTGAAAGTAATAGTACTGGTACTGATTCATTCAAGAGTATTACTAGAACTAGTACTGGTTCATTCAAGAGTATTACTAGTACTGATGAGCAAAGTAGTACTTTCATATGTGGTATGTGTATTATGCCAAGTCATCTGGAAGACTCTTTCAACGTCAAGGGTTGCAACCATTTTTATTGTCAGCACAGCATTGTGAATTTCGTAGTGTCCAAGCTCCAAGACAATGTTACATCTATTGTGTGCCCAGAAAGAGGCTGCAGAGGAGTGTTAAAACCTGAGTGCTGTCGCTCAATACTCCCAAATGAAATCTTTGATAGCTGGATCAATGCCTTATGGGATCAAAATGGGGAATCTTCAAATATGGACAGCAATAATGCTAATACTTTTGTATGTGATTTATGTGTTGAAGAAATTCACCTGGAAGGTTCATTTGACATCAAGGGTTGCAATCATTTTTACTGTCGCCAATGCATTGTTAATTTTGTATCGTCCAAGCTCCAAGAAAATGTTGCATCCATTGCGTGCCCTGAACCAGGCTGCAGGGGAGTGTTAGATCCTGAGTACTGTCGTCCAATCCTTCCAAACAAGGTCTTTGATTTGTGGGTTCATGCATTATGGAATCAAGAAGAGCAATCTTCTAATTTTGAAATCAATAATGCTAGTACTTTCATATGTGATTTCTGTGTTGAGCCAATTAGTCTGGAAGACTCATTTAACGTCAAGGGCTGCACCCGTTTTTACTGTCAGCAATGCCTTGTCAATTTTGTAGTGTCGAAGCTCCAAGACAATCTGACCTCCATTGAGTGCCCTGAACCAGGCTGCTGGGGAGTGTTAGAACCTGAGTACTGTCGTCCAATCCTCCCAAACGATGTGTTTGATCGGTGGGGAAAAGCTGTTGTTGAAAATCTGATCACTGGATCTGAGACTTTGAAGGCCTTCTACTGTCCCTTCAAGGATTGCTCAGCTATGTTGATTGATGATGGTAATAAGATTATACAGAAATCAGAATGTCCATACTGTAAGAAAGTGTTCTGCGCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

423

Amino Acids

47.42

Weight (kDa)

5.07

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1264
AclWI	GGATC	4 cut(s)	557, 573, 776, 1153
AcsI	RAATTY	2 cut(s)	424, 639
AfiI	CCNNNNNNNGG	3 cut(s)	479, 761, 1043
AflIII	ACRYGT	1 cut(s)	80
AhlI	ACTAGT	3 cut(s)	107, 278, 305
AjnI	CCWGG	3 cut(s)	645, 760, 1042
AluBI	AGCT	6 cut(s)	442, 546, 724, 1006, 1121, 1193
AluI	AGCT	6 cut(s)	442, 546, 724, 1006, 1121, 1193
Alw26I	GTCTC	1 cut(s)	1145
AlwI	GGATC	4 cut(s)	557, 573, 776, 1153
Ama87I	CYCGRG	1 cut(s)	171
AoxI	GGCC	1 cut(s)	1161
ApeKI	GCWGC	4 cut(s)	483, 765, 954, 1047
ApoI	RAATTY	2 cut(s)	424, 639
Asp700I	GAANNNNTTC	3 cut(s)	639, 1163, 1256
AspLEI	GCGC	1 cut(s)	1265
AsuC2I	CCSGG	2 cut(s)	172, 173
AsuHPI	GGTGA	1 cut(s)	635
AsuNHI	GCTAGC	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	171
BaeGI	GKGCMC	3 cut(s)	473, 755, 1037
BarI	GAAGNNNNNNTAC	2 cut(s)	1151, 1183
BbsI	GAAGAC	4 cut(s)	48, 183, 375, 939
BbvI	GCAGC	4 cut(s)	470, 752, 941, 1034
BccI	CCATC	1 cut(s)	1202
BciT130I	CCWGG	3 cut(s)	647, 762, 1044
BclI	TGATCA	2 cut(s)	205, 1137
BcnI	CCSGG	2 cut(s)	172, 173
BcoDI	GTCTC	1 cut(s)	1145
BcuI	ACTAGT	3 cut(s)	107, 278, 305
BfaI	CTAG	7 cut(s)	14, 108, 120, 273, 279, 306, 888
BfmI	CTRYAG	2 cut(s)	484, 766
BisI	GCNGC	4 cut(s)	484, 766, 955, 1048
BlpI	GCTNAGC	1 cut(s)	1189
BlsI	GCNGC	4 cut(s)	485, 767, 956, 1049
BmcAI	AGTACT	9 cut(s)	106, 136, 244, 283, 310, 328, 791, 892, 1073
Bme1390I	CCNGG	5 cut(s)	172, 173, 647, 762, 1044
BmeT110I	CYCGRG	1 cut(s)	171
BmrFI	CCNGG	5 cut(s)	172, 173, 647, 762, 1044
BmsI	GCATC	1 cut(s)	749
BmtI	GCTAGC	1 cut(s)	17
BpiI	GAAGAC	4 cut(s)	48, 183, 375, 939
Bpu1102I	GCTNAGC	1 cut(s)	1189
BpuMI	CCSGG	2 cut(s)	172, 173
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	3 cut(s)	479, 761, 1043
Bse1I	ACTGG	4 cut(s)	28, 250, 289, 1147
Bse3DI	GCAATG	2 cut(s)	744, 983
BseBI	CCWGG	3 cut(s)	647, 762, 1044
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	740
BseLI	CCNNNNNNNGG	3 cut(s)	479, 761, 1043
BseMI	GCAATG	2 cut(s)	744, 983
BseMII	CTCAG	5 cut(s)	495, 777, 1059, 1140, 1203
BseNI	ACTGG	4 cut(s)	28, 250, 289, 1147
BseRI	GAGGAG	1 cut(s)	504
BseSI	GKGCMC	3 cut(s)	473, 755, 1037
BseXI	GCAGC	4 cut(s)	470, 752, 941, 1034
BseYI	CCCAGC	1 cut(s)	1050
BsgI	GTGCAG	1 cut(s)	940
BshFI	GGCC	1 cut(s)	1163
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	1158
BslI	CCNNNNNNNGG	3 cut(s)	479, 761, 1043
BsmAI	GTCTC	1 cut(s)	1145
BsmFI	GGGAC	1 cut(s)	1158
BsmI	GAATGC	2 cut(s)	27, 54
BsnI	GGCC	1 cut(s)	1163
BsoBI	CYCGRG	1 cut(s)	171
Bsp1286I	GDGCHC	3 cut(s)	473, 755, 1037
Bsp143I	GATC	7 cut(s)	205, 549, 565, 781, 1105, 1137, 1145
Bsp1720I	GCTNAGC	1 cut(s)	1189
BspANI	GGCC	1 cut(s)	1163
BspCNI	CTCAG	5 cut(s)	496, 778, 1060, 1141, 1202
BspHI	TCATGA	1 cut(s)	64
BspMAI	CTGCAG	2 cut(s)	488, 770
BspOI	GCTAGC	1 cut(s)	17
BspPI	GGATC	4 cut(s)	557, 573, 776, 1153
BspQI	GCTCTTC	1 cut(s)	849
BsrDI	GCAATG	2 cut(s)	744, 983
BsrI	ACTGG	4 cut(s)	28, 250, 289, 1147
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	7 cut(s)	205, 549, 565, 781, 1105, 1137, 1145
Bst2UI	CCWGG	3 cut(s)	647, 762, 1044
Bst4CI	ACNGT	8 cut(s)	104, 689, 794, 971, 1076, 1172, 1247, 1269
Bst6I	CTCTTC	1 cut(s)	849
BstAPI	GCANNNNNTGC	1 cut(s)	746
BstC8I	GCNNGC	2 cut(s)	15, 751
BstDEI	CTNAG	5 cut(s)	504, 786, 1068, 1149, 1189
BstENI	CCTNNNNNAGG	2 cut(s)	759, 1041
BstF5I	GGATG	1 cut(s)	740
BstHHI	GCGC	1 cut(s)	1265
BstKTI	GATC	7 cut(s)	208, 552, 568, 784, 1108, 1140, 1148
BstMAI	GTCTC	1 cut(s)	1145
BstMBI	GATC	7 cut(s)	205, 549, 565, 781, 1105, 1137, 1145
BstMWI	GCNNNNNNNGC	1 cut(s)	746
BstNI	CCWGG	3 cut(s)	647, 762, 1044
BstNSI	RCATGY	1 cut(s)	84
BstSCI	CCNGG	5 cut(s)	170, 171, 645, 760, 1042
BstSFI	CTRYAG	2 cut(s)	484, 766
BstSLI	GKGCMC	3 cut(s)	473, 755, 1037
BstV1I	GCAGC	4 cut(s)	470, 752, 941, 1034
BstV2I	GAAGAC	4 cut(s)	48, 183, 375, 939
BstX2I	RGATCY	2 cut(s)	781, 1145
BstXI	CCANNNNNNTGG	1 cut(s)	1050
BstYI	RGATCY	2 cut(s)	781, 1145
BsuRI	GGCC	1 cut(s)	1163
BtsCI	GGATG	1 cut(s)	740
BtsIMutI	CAGTG	2 cut(s)	92, 1140
Cac8I	GCNNGC	2 cut(s)	15, 751
CciI	TCATGA	1 cut(s)	64
CfoI	GCGC	1 cut(s)	1265
Cfr9I	CCCGGG	1 cut(s)	171
CviAII	CATG	4 cut(s)	65, 81, 194, 836
DdeI	CTNAG	5 cut(s)	504, 786, 1068, 1149, 1189
DpnI	GATC	7 cut(s)	207, 551, 567, 783, 1107, 1139, 1147
DpnII	GATC	7 cut(s)	205, 549, 565, 781, 1105, 1137, 1145
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Eco147I	AGGCCT	1 cut(s)	1163
Eco88I	CYCGRG	1 cut(s)	171
EcoNI	CCTNNNNNAGG	2 cut(s)	759, 1041
EcoRII	CCWGG	3 cut(s)	645, 760, 1042
EcoT22I	ATGCAT	2 cut(s)	701, 841
FaeI	CATG	4 cut(s)	68, 84, 197, 839
FalI	AAGNNNNNCTT	4 cut(s)	121, 153, 313, 345
FaqI	GGGAC	1 cut(s)	1158
FatI	CATG	4 cut(s)	64, 80, 193, 835
FauNDI	CATATG	2 cut(s)	335, 899
FbaI	TGATCA	2 cut(s)	205, 1137
Fnu4HI	GCNGC	4 cut(s)	484, 766, 955, 1048
FokI	GGATG	1 cut(s)	727
Fsp4HI	GCNGC	4 cut(s)	484, 766, 955, 1048
FspBI	CTAG	7 cut(s)	14, 108, 120, 273, 279, 306, 888
FspI	TGCGCA	1 cut(s)	1264
GlaI	GCGC	1 cut(s)	1264
GluI	GCNGC	4 cut(s)	484, 766, 955, 1048
GsaI	CCCAGC	1 cut(s)	1054
HaeIII	GGCC	1 cut(s)	1163
HapII	CCGG	1 cut(s)	172
HhaI	GCGC	1 cut(s)	1265
Hin1II	CATG	4 cut(s)	68, 84, 197, 839
Hin6I	GCGC	1 cut(s)	1263
HinP1I	GCGC	1 cut(s)	1263
HinfI	GANTC	7 cut(s)	179, 218, 254, 371, 578, 847, 935
HpaII	CCGG	1 cut(s)	172
HphI	GGTGA	1 cut(s)	635
Hpy188I	TCNGA	4 cut(s)	1020, 1137, 1150, 1234
Hpy188III	TCNNGA	9 cut(s)	65, 129, 230, 262, 295, 365, 785, 851, 929
HpyAV	CCTTC	5 cut(s)	644, 815, 1153, 1174, 1186
HpyCH4III	ACNGT	8 cut(s)	104, 689, 794, 971, 1076, 1172, 1247, 1269
HpyCH4IV	ACGT	3 cut(s)	189, 381, 945
HpyF10VI	GCNNNNNNNGC	1 cut(s)	746
HpyF3I	CTNAG	5 cut(s)	504, 786, 1068, 1149, 1189
HpySE526I	ACGT	3 cut(s)	189, 381, 945
Hsp92II	CATG	4 cut(s)	68, 84, 197, 839
HspAI	GCGC	1 cut(s)	1263
Ksp22I	TGATCA	2 cut(s)	205, 1137
Kzo9I	GATC	7 cut(s)	205, 549, 565, 781, 1105, 1137, 1145
LguI	GCTCTTC	1 cut(s)	849
LmnI	GCTCC	3 cut(s)	447, 729, 1011
Lsp1109I	GCAGC	4 cut(s)	470, 752, 941, 1034
LweI	GCATC	1 cut(s)	749
MaeI	CTAG	7 cut(s)	14, 108, 120, 273, 279, 306, 888
MaeII	ACGT	3 cut(s)	189, 381, 945
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	7 cut(s)	207, 551, 567, 783, 1107, 1139, 1147
MboI	GATC	7 cut(s)	205, 549, 565, 781, 1105, 1137, 1145
MboII	GAAGA	9 cut(s)	48, 188, 213, 380, 573, 647, 855, 866, 944
MflI	RGATCY	2 cut(s)	781, 1145
MhlI	GDGCHC	3 cut(s)	473, 755, 1037
MluCI	AATT	7 cut(s)	88, 424, 639, 706, 868, 921, 988
MlyI	GAGTC	3 cut(s)	173, 365, 929
MnlI	CCTC	4 cut(s)	473, 482, 1033, 1097
Mph1103I	ATGCAT	2 cut(s)	701, 841
MroXI	GAANNNNTTC	3 cut(s)	639, 1163, 1256
MseI	TTAA	3 cut(s)	497, 705, 942
MspI	CCGG	1 cut(s)	172
MspR9I	CCNGG	5 cut(s)	172, 173, 647, 762, 1044
Mva1269I	GAATGC	2 cut(s)	27, 54
MvaI	CCWGG	3 cut(s)	647, 762, 1044
MwoI	GCNNNNNNNGC	1 cut(s)	746
NciI	CCSGG	2 cut(s)	172, 173
NdeI	CATATG	2 cut(s)	335, 899
NdeII	GATC	7 cut(s)	205, 549, 565, 781, 1105, 1137, 1145
NheI	GCTAGC	1 cut(s)	13
NlaIII	CATG	4 cut(s)	68, 84, 197, 839
NsbI	TGCGCA	1 cut(s)	1264
NsiI	ATGCAT	2 cut(s)	701, 841
NspI	RCATGY	1 cut(s)	84
PagI	TCATGA	1 cut(s)	64
PceI	AGGCCT	1 cut(s)	1163
PciI	ACATGT	1 cut(s)	80
PciSI	GCTCTTC	1 cut(s)	849
PctI	GAATGC	2 cut(s)	27, 54
PdmI	GAANNNNTTC	3 cut(s)	639, 1163, 1256
PfeI	GAWTC	4 cut(s)	218, 254, 578, 847
PkrI	GCNGC	4 cut(s)	485, 767, 956, 1049
PleI	GAGTC	3 cut(s)	173, 365, 929
PpsI	GAGTC	3 cut(s)	173, 365, 929
PscI	ACATGT	1 cut(s)	80
Psp6I	CCWGG	3 cut(s)	645, 760, 1042
PspFI	CCCAGC	1 cut(s)	1050
PspGI	CCWGG	3 cut(s)	645, 760, 1042
PstI	CTGCAG	2 cut(s)	488, 770
PsuI	RGATCY	2 cut(s)	781, 1145
SapI	GCTCTTC	1 cut(s)	849
SaqAI	TTAA	3 cut(s)	497, 705, 942
SatI	GCNGC	4 cut(s)	484, 766, 955, 1048
Sau3AI	GATC	7 cut(s)	205, 549, 565, 781, 1105, 1137, 1145
ScaI	AGTACT	9 cut(s)	106, 136, 244, 283, 310, 328, 791, 892, 1073
SchI	GAGTC	3 cut(s)	173, 365, 929
ScrFI	CCNGG	5 cut(s)	172, 173, 647, 762, 1044
SduI	GDGCHC	3 cut(s)	473, 755, 1037
SfaNI	GCATC	1 cut(s)	749
SfcI	CTRYAG	2 cut(s)	484, 766
SmaI	CCCGGG	1 cut(s)	173
SpeI	ACTAGT	3 cut(s)	107, 278, 305
Sse9I	AATT	7 cut(s)	88, 424, 639, 706, 868, 921, 988
SseBI	AGGCCT	1 cut(s)	1163
SspMI	CTAG	7 cut(s)	14, 108, 120, 273, 279, 306, 888
StuI	AGGCCT	1 cut(s)	1163
StyD4I	CCNGG	5 cut(s)	170, 171, 645, 760, 1042
TaaI	ACNGT	8 cut(s)	104, 689, 794, 971, 1076, 1172, 1247, 1269
TaiI	ACGT	3 cut(s)	192, 384, 948
TaqI	TCGA	1 cut(s)	1001
TasI	AATT	7 cut(s)	88, 424, 639, 706, 868, 921, 988
TfiI	GAWTC	4 cut(s)	218, 254, 578, 847
Tru1I	TTAA	3 cut(s)	497, 705, 942
Tru9I	TTAA	3 cut(s)	497, 705, 942
TscAI	CASTG	2 cut(s)	99, 1147
TseI	GCWGC	4 cut(s)	483, 765, 954, 1047
TspDTI	ATGAA	9 cut(s)	113, 182, 246, 279, 322, 546, 645, 824, 886
TspMI	CCCGGG	1 cut(s)	171
TspRI	CASTG	2 cut(s)	99, 1147
XagI	CCTNNNNNAGG	2 cut(s)	759, 1041
XapI	RAATTY	2 cut(s)	424, 639
XceI	RCATGY	1 cut(s)	84
XmaI	CCCGGG	1 cut(s)	171
XmnI	GAANNNNTTC	3 cut(s)	639, 1163, 1256
XspI	CTAG	7 cut(s)	14, 108, 120, 273, 279, 306, 888
ZrmI	AGTACT	9 cut(s)	106, 136, 244, 283, 310, 328, 791, 892, 1073
Zsp2I	ATGCAT	2 cut(s)	701, 841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.